메뉴 건너뛰기




Volumn 44, Issue 43, 2005, Pages 14289-14297

Differential effects of temperature and hydrostatic pressure on the formation of quinonoid intermediates from L-Trp and L-Met by H463F mutant Escherichia coli tryptophan indole-lyase

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIUM COMPOUNDS; CATALYSIS; DIMERS; ENZYMES; HYDROSTATIC PRESSURE; QUANTUM THEORY; RATE CONSTANTS;

EID: 27444442894     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi051062a     Document Type: Article
Times cited : (5)

References (42)
  • 1
    • 0019878613 scopus 로고
    • Equilibrium and kinetic study of interaction of amino acid inhibitors with tryptophanase: Mechanism of quinonoid intermediate formation
    • June, D. S., Suelter, C. H., and Dye, J. L. (1981) Equilibrium and Kinetic Study of Interaction of Amino Acid Inhibitors with Tryptophanase: Mechanism of Quinonoid Intermediate Formation, Biochemistry 20, 2714-2719.
    • (1981) Biochemistry , vol.20 , pp. 2714-2719
    • June, D.S.1    Suelter, C.H.2    Dye, J.L.3
  • 2
    • 0025834941 scopus 로고
    • Equilibria and absorption spectra of tryptophanase
    • Metzler, C. M., Viswanath, R., and Metzler, D. E. (1991) Equilibria and Absorption Spectra of Tryptophanase, J. Biol. Chem. 266, 9374-9381.
    • (1991) J. Biol. Chem. , vol.266 , pp. 9374-9381
    • Metzler, C.M.1    Viswanath, R.2    Metzler, D.E.3
  • 3
    • 0014216798 scopus 로고
    • The relation of spectral changes and tritium exchange reactions to the mechanism of tryptophanase-catalyzed reactions
    • Morino, Y., and Snell, E. E. (1967) The Relation of Spectral Changes and Tritium Exchange Reactions to the Mechanism of Tryptophanase-catalyzed Reactions, J. Biol. Chem. 242, 2800-2809.
    • (1967) J. Biol. Chem. , vol.242 , pp. 2800-2809
    • Morino, Y.1    Snell, E.E.2
  • 4
    • 0026733332 scopus 로고
    • Characterization of the tryptophanase operon of Proteus vulgaris. Cloning, nucleotide sequence, amino acid homology, and in vitro synthesis of the leader peptide and regulatory analysis
    • Kamath, A. V., and Yanofsky, C. (1992) Characterization of the Tryptophanase Operon of Proteus vulgaris. Cloning, Nucleotide Sequence, Amino Acid Homology, and in vitro Synthesis of the Leader Peptide and Regulatory Analysis, J. Biol. Chem. 267, 19978-19985.
    • (1992) J. Biol. Chem. , vol.267 , pp. 19978-19985
    • Kamath, A.V.1    Yanofsky, C.2
  • 5
    • 0031974011 scopus 로고    scopus 로고
    • The tryptophanase gene cluster of Haemophilus influenzae type b: Evidence for horizontal gene transfer
    • Martin, K., Morlin, G., Smith, A., Nordyke, A., Eisenstark, A., and Golomb, M. (1998) The Tryptophanase Gene Cluster of Haemophilus influenzae Type b: Evidence for Horizontal Gene Transfer, J. Bacteriol. 180, 107-118.
    • (1998) J. Bacteriol. , vol.180 , pp. 107-118
    • Martin, K.1    Morlin, G.2    Smith, A.3    Nordyke, A.4    Eisenstark, A.5    Golomb, M.6
  • 7
    • 0036009525 scopus 로고    scopus 로고
    • Isolation of an Escherichia coli strain mutant unable to form biofilm on polystyrene and to adhere to human pneumocyte cells: Involvement of tryptophanase
    • Di Martino, P., Merieau, A., Phillips, R., Orange, N., and Hulen, C. (2002) Isolation of an Escherichia coli Strain Mutant Unable to form Biofilm on Polystyrene and to Adhere to Human Pneumocyte Cells: Involvement of Tryptophanase, Can. J. Microbiol. 48, 132-137.
    • (2002) Can. J. Microbiol. , vol.48 , pp. 132-137
    • Di Martino, P.1    Merieau, A.2    Phillips, R.3    Orange, N.4    Hulen, C.5
  • 8
    • 0242552360 scopus 로고    scopus 로고
    • Indole can act as an extracellular signal to regulate biofilm formation in Escherichia coli and in other indole-producing bacteria
    • Di Martino, P., Fursy, R., Bret, L., Sundararaju, B., and Phillips, R. S. (2003) Indole can act as an Extracellular Signal to Regulate Biofilm Formation in Escherichia coli and in Other Indole-producing Bacteria, Can. J. Microbiol. 49, 443-449.
    • (2003) Can. J. Microbiol. , vol.49 , pp. 443-449
    • Di Martino, P.1    Fursy, R.2    Bret, L.3    Sundararaju, B.4    Phillips, R.S.5
  • 9
    • 0017196118 scopus 로고
    • Direct spectrophotometric assay of tryptophanase
    • Suelter, C. H., Wang, J., and Snell, E. E. (1976) Direct Spectrophotometric Assay of Tryptophanase, FEBS Lett. 66, 230-232.
    • (1976) FEBS Lett. , vol.66 , pp. 230-232
    • Suelter, C.H.1    Wang, J.2    Snell, E.E.3
  • 10
    • 0017379577 scopus 로고
    • The interaction of Escherichia coli tryptophanase with various amino acids and their analogs. Active site mapping
    • Watanabe, T., and Snell, E. E. (1977) The Interaction of Escherichia coli Tryptophanase with Various Amino Acids and Their Analogs. Active Site Mapping, J. Biochem. 82, 733-745.
    • (1977) J. Biochem. , vol.82 , pp. 733-745
    • Watanabe, T.1    Snell, E.E.2
  • 11
    • 0023376311 scopus 로고
    • Reactions of O-acyl-L-serines with tryptophanase, tyrosine phenol-lyase and tryptophan synthase
    • Phillips, R. S. (1987) Reactions of O-Acyl-L-serines with Tryptophanase, Tyrosine Phenol-lyase and Tryptophan Synthase, Arch. Biochem. Biophys. 256, 302-310.
    • (1987) Arch. Biochem. Biophys. , vol.256 , pp. 302-310
    • Phillips, R.S.1
  • 12
    • 0030456052 scopus 로고    scopus 로고
    • Effects of α-deuteration and of Aza and Thia analogs of L-tryptophan on formation of intermediates in the reaction of Escherichia coli tryptophan indole-lyase
    • Sloan, M. S., and Phillips, R. S. (1996) Effects of α-Deuteration and of Aza and Thia Analogs of L-Tryptophan on Formation of Intermediates in the Reaction of Escherichia coli Tryptophan Indole-lyase, Biochemistry 35, 16165-16173.
    • (1996) Biochemistry , vol.35 , pp. 16165-16173
    • Sloan, M.S.1    Phillips, R.S.2
  • 13
    • 0034673323 scopus 로고    scopus 로고
    • Proton transfer and carbon-carbon bond cleavage in the elimination of indole catalyzed by Escherichia coli tryptophan indole-lyase
    • Phillips, R. S., Sundararju, B., and Faleev, N. G. (2000) Proton Transfer and Carbon-Carbon Bond Cleavage in the Elimination of Indole Catalyzed by Escherichia coli Tryptophan Indole-lyase, J. Am. Chem. Soc. 122, 1008-1114.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 1008-1114
    • Phillips, R.S.1    Sundararju, B.2    Faleev, N.G.3
  • 14
    • 0025866674 scopus 로고
    • The reaction of indole and benzimidazole with amino acid complexes of E. coli tryptophan indole-lyase: Detection of a new reaction intermediate
    • Phillips, R. S. (1991) The Reaction of Indole and Benzimidazole with Amino Acid Complexes of E. coli Tryptophan Indole-lyase: Detection of a New Reaction Intermediate, Biochemistry 30, 5927-5934.
    • (1991) Biochemistry , vol.30 , pp. 5927-5934
    • Phillips, R.S.1
  • 15
    • 33845184370 scopus 로고
    • The mechanism of tryptophan indole-lyase: Insights from pre-steady-state kinetics and substrate and solvent isotope effects
    • Phillips, R. S. (1989) The Mechanism of Tryptophan Indole-lyase: Insights from Pre-steady-state Kinetics and Substrate and Solvent Isotope Effects, J. Am. Chem. Soc. 111, 727-730.
    • (1989) J. Am. Chem. Soc. , vol.111 , pp. 727-730
    • Phillips, R.S.1
  • 16
    • 0028942895 scopus 로고
    • The mechanism of Escherichia coli tryptophan indole-lyase: Substituent effects on steady-state and pre-steady-state kinetic parameters for Aryl-substituted tryptophan derivatives
    • Lee, M., and Phillips, R. S (1995) The Mechanism of Escherichia coli Tryptophan Indole-lyase: Substituent Effects on Steady-state and Pre-steady-state Kinetic Parameters for Aryl-substituted Tryptophan Derivatives, Biol. Med. Chem. 3, 195-205.
    • (1995) Biol. Med. Chem. , vol.3 , pp. 195-205
    • Lee, M.1    Phillips, R.S.2
  • 17
    • 0025151144 scopus 로고
    • The mechanism of binding of substrate analogues to tryptophan indole-lyase: Studies using rapid-scanning and single wave-length stopped-flow spectrophotometry
    • Phillips, R. S., Bender, S. L., Brzovic, P., and Dunn, M. F. (1990) The Mechanism of Binding of Substrate Analogues to Tryptophan Indole-lyase: Studies Using Rapid-Scanning and Single Wave-length Stopped-Flow Spectrophotometry, Biochemistry 29, 8608-8614.
    • (1990) Biochemistry , vol.29 , pp. 8608-8614
    • Phillips, R.S.1    Bender, S.L.2    Brzovic, P.3    Dunn, M.F.4
  • 18
    • 0037177226 scopus 로고    scopus 로고
    • Formation in vitro of hybrid dimers of H463F and Y74F mutant Escherichia coli tryptophan indole-lyase rescues activity with L-tryptophan
    • Phillips, R. S., Johnson, N., and Kamath, A. V. (2002) Formation in vitro of Hybrid Dimers of H463F and Y74F Mutant Escherichia coli Tryptophan Indole-lyase Rescues Activity with L-Tryptophan, Biochemistry 41, 4012-4019.
    • (2002) Biochemistry , vol.41 , pp. 4012-4019
    • Phillips, R.S.1    Johnson, N.2    Kamath, A.V.3
  • 20
    • 0027420131 scopus 로고
    • S-Aryl-L-cysteine S,S-dioxides: Design and evaluation of a new class of mechanism based inhibitors of kynureninase
    • Dua, R. K., Taylor, E. W., and Phillips, R. S. (1993) S-Aryl-L-cysteine S,S-Dioxides: Design and Evaluation of a New Class of Mechanism Based Inhibitors of Kynureninase, J. Am. Chem. Soc. 115, 1264-1270.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 1264-1270
    • Dua, R.K.1    Taylor, E.W.2    Phillips, R.S.3
  • 21
    • 0024335081 scopus 로고
    • Evidence that cysteine-298 is in the active site of tryptophan indole-lyase
    • Phillips, R. S., and Gollnick, P. D. (1989) Evidence that Cysteine-298 is in the Active Site of Tryptophan Indole-lyase, J. Biol. Chem. 254, 10627-10632.
    • (1989) J. Biol. Chem. , vol.254 , pp. 10627-10632
    • Phillips, R.S.1    Gollnick, P.D.2
  • 22
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. (1976) A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-dye Binding, Anal. Biochem. 72, 248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 23
    • 0000818472 scopus 로고
    • Reaction of protonic ionization for buffering agents
    • Kitamura, Y., and Itoh, T. (1987) Reaction of Protonic Ionization for Buffering Agents, J. Solution Chem. 16, 715-725.
    • (1987) J. Solution Chem. , vol.16 , pp. 715-725
    • Kitamura, Y.1    Itoh, T.2
  • 24
    • 0035951080 scopus 로고    scopus 로고
    • Role of the chain termini for the folding transition state of the cold shock protein
    • Perl, D., Holtermann, G., and Schmid, F. X. (2001) Role of the Chain Termini for the Folding Transition State of the Cold Shock Protein, Biochemistry 40, 15501-15511.
    • (2001) Biochemistry , vol.40 , pp. 15501-15511
    • Perl, D.1    Holtermann, G.2    Schmid, F.X.3
  • 26
    • 0002306568 scopus 로고
    • A critical comparison of least absolute deviation fitting (robust) and least-squares fitting: The importance of error distributions
    • Matheson, I. B. C. (1990) A critical comparison of least absolute deviation fitting (robust) and least-squares fitting: The importance of error distributions, Comput. Chem. 14, 49-57.
    • (1990) Comput. Chem. , vol.14 , pp. 49-57
    • Matheson, I.B.C.1
  • 27
    • 0016749447 scopus 로고
    • Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data
    • Strickland, S., Palmer, G., and Massey, V. (1975) Determination of Dissociation Constants and Specific Rate Constants of Enzyme-substrate (or Protein-ligand) Interactions from Rapid Reaction Kinetic Data, J. Biol. Chem. 250, 4048-4052.
    • (1975) J. Biol. Chem. , vol.250 , pp. 4048-4052
    • Strickland, S.1    Palmer, G.2    Massey, V.3
  • 28
    • 0024293225 scopus 로고
    • Mechanistic deductions from multiple kinetic and solvent isotope effects and pH studies of pyridoxal phosphate-dependent carbon-carbon lyases: Escherichia coli tryptophan indole-lyase
    • Kiick, D. M., and Phillips, R. S. (1988) Mechanistic Deductions from Multiple Kinetic and Solvent Isotope Effects and pH Studies of Pyridoxal Phosphate-Dependent Carbon-Carbon Lyases: Escherichia coli Tryptophan Indole-lyase, Biochemistry 27, 7333-7338.
    • (1988) Biochemistry , vol.27 , pp. 7333-7338
    • Kiick, D.M.1    Phillips, R.S.2
  • 29
    • 0034713844 scopus 로고    scopus 로고
    • The role of glutamic acid-69 in the activation of Citrobacter freundii tyrosine phenol-lyase by monovalent cations
    • Sundararaju, B., Chen, H., Shillcutt, S., and Phillips, R. S. (2000) The Role of Glutamic Acid-69 in the Activation of Citrobacter freundii Tyrosine Phenol-lyase by Monovalent Cations, Biochemistry 39, 8546-8555.
    • (2000) Biochemistry , vol.39 , pp. 8546-8555
    • Sundararaju, B.1    Chen, H.2    Shillcutt, S.3    Phillips, R.S.4
  • 30
    • 0016693908 scopus 로고
    • Kinetic and equilibrium studies on the activation of Escherichia coli K12 tryptophanase by pyridoxal 5′-phosphate and monovalent cations
    • Hogberg-Raibaud, A., Raibaud, O., and Goldberg, M. E. (1975) Kinetic and equilibrium studies on the activation of Escherichia coli K12 tryptophanase by pyridoxal 5′-phosphate and monovalent cations, J. Biol. Chem. 250, 3352-3358.
    • (1975) J. Biol. Chem. , vol.250 , pp. 3352-3358
    • Hogberg-Raibaud, A.1    Raibaud, O.2    Goldberg, M.E.3
  • 31
    • 0017342650 scopus 로고
    • Monovalent cation activation of tryptophanase
    • Suelter, C. H., and Snell, E. E. (1977) Monovalent cation activation of tryptophanase, J. Biol. Chem. 252, 1852-1857.
    • (1977) J. Biol. Chem. , vol.252 , pp. 1852-1857
    • Suelter, C.H.1    Snell, E.E.2
  • 32
    • 0002845355 scopus 로고
    • The effects of pressure on kinetic isotope effects
    • (Buncel, E., and Lee, C. C., Eds.), Elsevier, Amsterdam
    • Isaacs, N. S. (1984) The Effects of Pressure on Kinetic Isotope Effects, in Isotopes in Organic Chemistry (Buncel, E., and Lee, C. C., Eds.) Vol. 6, pp 67-105, Elsevier, Amsterdam.
    • (1984) Isotopes in Organic Chemistry , vol.6 , pp. 67-105
    • Isaacs, N.S.1
  • 33
    • 0024379962 scopus 로고
    • Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase
    • Grant, K. L., and Klinman, J. P. (1989) Evidence that both Protium and Deuterium undergo Significant Tunneling in the Reaction Catalyzed by Bovine Serum Amine Oxidase, Biochemistry 28, 6597-6605.
    • (1989) Biochemistry , vol.28 , pp. 6597-6605
    • Grant, K.L.1    Klinman, J.P.2
  • 34
    • 0027196492 scopus 로고
    • Unmasking of hydrogen tunneling in the horse liver alcohol dehydrogenase reaction by site-directed mutagenesis
    • Bahnson, B. J., Park, D. H., Kim, K., Plapp, B. V., and Klinman, J. P. (1993) Unmasking of Hydrogen Tunneling in the Horse Liver Alcohol Dehydrogenase Reaction by Site-directed Mutagenesis, Biochemistry 32, 5503-5507.
    • (1993) Biochemistry , vol.32 , pp. 5503-5507
    • Bahnson, B.J.1    Park, D.H.2    Kim, K.3    Plapp, B.V.4    Klinman, J.P.5
  • 36
    • 0033592315 scopus 로고    scopus 로고
    • Nature of hydrogen transfer in soybean lipoxygenase 1: Separation of primary and secondary isotope effects
    • Rickert, K. W., and Klinman, J. P. (1999) Nature of Hydrogen Transfer in Soybean Lipoxygenase 1: Separation of Primary and Secondary Isotope Effects, Biochemistry 38, 12218-12228.
    • (1999) Biochemistry , vol.38 , pp. 12218-12228
    • Rickert, K.W.1    Klinman, J.P.2
  • 37
    • 0029995666 scopus 로고    scopus 로고
    • Substitution of pyridoxal 5′-phosphate in the O-acetylserine sulfhydrylase from Salmonella typhimurium by cofactor analogs provides a test of the mechanism proposed for formation of the α-aminoacrylate intermediate
    • Cook, P. F., Tai, C. H., Hwang, C. C., Woehl, E. U., Dunn, M. F., and Schnackerz, K. D. (1996) Substitution of pyridoxal 5′-phosphate in the O-acetylserine sulfhydrylase from Salmonella typhimurium by cofactor analogs provides a test of the mechanism proposed for formation of the α-aminoacrylate intermediate, J. Biol. Chem. 271, 25842-25849.
    • (1996) J. Biol. Chem. , vol.271 , pp. 25842-25849
    • Cook, P.F.1    Tai, C.H.2    Hwang, C.C.3    Woehl, E.U.4    Dunn, M.F.5    Schnackerz, K.D.6
  • 38
    • 0017398625 scopus 로고
    • Pressure effects on proton tunneling
    • Isaacs, N. S., Javaid, K., and Rannala, E. (1977) Pressure effects on proton tunneling, Nature 268, 372.
    • (1977) Nature , vol.268 , pp. 372
    • Isaacs, N.S.1    Javaid, K.2    Rannala, E.3
  • 40
    • 0034097153 scopus 로고    scopus 로고
    • Effect of pressure on deuterium isotope effects of yeast alcohol dehydrogenase: Evidence for mechanical models of catalysis
    • Northrop, D. B., and Cho, Y. K. (2000) Effect of Pressure on Deuterium Isotope Effects of Yeast Alcohol Dehydrogenase: Evidence for Mechanical Models of Catalysis, Biochemistry 39, 2406-2412.
    • (2000) Biochemistry , vol.39 , pp. 2406-2412
    • Northrop, D.B.1    Cho, Y.K.2
  • 41
    • 9744240257 scopus 로고    scopus 로고
    • Effects of pressure on deuterium isotope effects of yeast alcohol dehydrogenase using alternative substrates
    • Park, H., Kidman, G., and Northrop, D. B. (2005) Effects of Pressure on Deuterium Isotope Effects of Yeast Alcohol Dehydrogenase using Alternative Substrates, Arch. Biochem. Biophys. 433, 335-340.
    • (2005) Arch. Biochem. Biophys. , vol.433 , pp. 335-340
    • Park, H.1    Kidman, G.2    Northrop, D.B.3
  • 42
    • 0035936574 scopus 로고    scopus 로고
    • Effect of pressure on deuterium isotope effects of formate dehydrogenase
    • Quirk, D. J., and Northrop, D. B. (2001) Effect of Pressure on Deuterium Isotope Effects of Formate Dehydrogenase, Biochemistry 40, 847-851.
    • (2001) Biochemistry , vol.40 , pp. 847-851
    • Quirk, D.J.1    Northrop, D.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.