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Volumn 44, Issue 43, 2005, Pages 14045-14054

Directed evolution of highly homologous proteins with different folds by phage display: Implications for the protein folding code

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BACTERIOPHAGES; CHEMICAL BONDS; MUTAGENESIS; NUCLEAR MAGNETIC RESONANCE; STRUCTURE (COMPOSITION); THERMODYNAMIC PROPERTIES;

EID: 27444434259     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi051231r     Document Type: Article
Times cited : (48)

References (44)
  • 2
    • 0017694053 scopus 로고
    • Heterogeneity of nonimmune immunoglobulin Fc reactivity among gram-positive cocci: Description of three major types of receptors for human immunoglobulin G
    • Myhre, E. B., and Kronvall, G. (1977) Heterogeneity of nonimmune immunoglobulin Fc reactivity among gram-positive cocci: Description of three major types of receptors for human immunoglobulin G, Infect. Immun. 17, 475-482.
    • (1977) Infect. Immun. , vol.17 , pp. 475-482
    • Myhre, E.B.1    Kronvall, G.2
  • 3
    • 0021239624 scopus 로고
    • Streptococcal Fc receptors. II. Comparison of the reactivity of a receptor from a group C streptococcus with staphylococcal protein A
    • Reis, K. J., Ayoub, E. M., and Boyle, M. D. P. (1984) Streptococcal Fc receptors. II. Comparison of the reactivity of a receptor from a group C streptococcus with staphylococcal protein A, J. Immunol. 132, 3098-3102.
    • (1984) J. Immunol. , vol.132 , pp. 3098-3102
    • Reis, K.J.1    Ayoub, E.M.2    Boyle, M.D.P.3
  • 4
    • 0022845301 scopus 로고
    • A physicochemical study of protein G, a molecule with unique immunoglobulin G-binding properties
    • Åkerstrom, B., and Bjorck, L. (1986) A physicochemical study of protein G, a molecule with unique immunoglobulin G-binding properties, J. Biol. Chem. 261, 10240-10247.
    • (1986) J. Biol. Chem. , vol.261 , pp. 10240-10247
    • Åkerstrom, B.1    Bjorck, L.2
  • 6
    • 0026613602 scopus 로고
    • 1.67-.ANG. X-ray structure of the β2 immunoglobulin-binding domain of streptococcal protein G and comparison to the NMR structure of the β1 domain
    • Achari, A., Hale, S., Howard, A. J., Clore, G. M., Gronenborn, A. M., Hardman, K. D., and Whitlow, M. (1992) 1.67-.ANG. X-ray structure of the β2 immunoglobulin-binding domain of streptococcal protein G and comparison to the NMR structure of the β1 domain, Biochemistry 31, 10449-10457.
    • (1992) Biochemistry , vol.31 , pp. 10449-10457
    • Achari, A.1    Hale, S.2    Howard, A.J.3    Clore, G.M.4    Gronenborn, A.M.5    Hardman, K.D.6    Whitlow, M.7
  • 7
    • 0028354429 scopus 로고
    • Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR
    • Gallagher, T. D., Alexander, P., Bryan, P., and Gilliland, G. (1994) Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR, Biochemistry 33, 4721-4729.
    • (1994) Biochemistry , vol.33 , pp. 4721-4729
    • Gallagher, T.D.1    Alexander, P.2    Bryan, P.3    Gilliland, G.4
  • 9
    • 0028080176 scopus 로고
    • The third IgG-binding domain from streptococcal protein G: An analysis by X-ray crystallography of the structure alone and in a complex with Fab
    • Derrick, J. P., and Wigley, D. B. (1994) The third IgG-binding domain from streptococcal protein G: An analysis by X-ray crystallography of the structure alone and in a complex with Fab, J. Mol. Biol. 243, 906-918.
    • (1994) J. Mol. Biol. , vol.243 , pp. 906-918
    • Derrick, J.P.1    Wigley, D.B.2
  • 10
    • 0019522383 scopus 로고
    • Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-Å resolution
    • Deisenhofer, J. (1981) Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-Å resolution, Biochemistry 20, 2361-2370.
    • (1981) Biochemistry , vol.20 , pp. 2361-2370
    • Deisenhofer, J.1
  • 11
    • 0029644247 scopus 로고
    • Crystal structure of the C2 fragment of streptococcal protein G in complex with the Fc domain of human IgG
    • Sauer-Eriksson, A. E., Keywegt, G. J., Uhlen, M., and Jones, T. A. (1995) Crystal structure of the C2 fragment of streptococcal protein G in complex with the Fc domain of human IgG, Structure 3, 265-278.
    • (1995) Structure , vol.3 , pp. 265-278
    • Sauer-Eriksson, A.E.1    Keywegt, G.J.2    Uhlen, M.3    Jones, T.A.4
  • 12
    • 0017673298 scopus 로고
    • The interaction of protein A and Fc fragment of rabbit immunoglobulin G as probed by complement-fixation and nuclear magnetic resonance studies
    • Wright, C., Willan, K., Sjödahl, J., Burton, D. R., and Dwek, R. (1977) The interaction of protein A and Fc fragment of rabbit immunoglobulin G as probed by complement-fixation and nuclear magnetic resonance studies, Biochem. J. 167, 661-668.
    • (1977) Biochem. J. , vol.167 , pp. 661-668
    • Wright, C.1    Willan, K.2    Sjödahl, J.3    Burton, D.R.4    Dwek, R.5
  • 13
    • 0024338370 scopus 로고
    • The Fc binding site for streptococcal protein G is in the Cγ2-Cγ3 interface region of IgG and is related to the sites that bind staphylococcal protein A and human rheumatoid factors
    • Stone, G. S., Sjöbring, U., Björck, L., Sjöquist, J., Barber, C. V., and Nardella, F. A. (1989) The Fc binding site for streptococcal protein G is in the Cγ2-Cγ3 interface region of IgG and is related to the sites that bind staphylococcal protein A and human rheumatoid factors, J. Immunol. 143, 565-570.
    • (1989) J. Immunol. , vol.143 , pp. 565-570
    • Stone, G.S.1    Sjöbring, U.2    Björck, L.3    Sjöquist, J.4    Barber, C.V.5    Nardella, F.A.6
  • 14
    • 0026801084 scopus 로고
    • Three-dimensional solution structure of the B domain of staphylococcal protein A: Comparisons of the solution and crystal structures
    • Gouda, H., Torigoe, H., Saito, A., Sato, M., Arata, Y., and Shimada, I. (1992) Three-dimensional solution structure of the B domain of staphylococcal protein A: Comparisons of the solution and crystal structures, Biochemistry 31, 9665-9672.
    • (1992) Biochemistry , vol.31 , pp. 9665-9672
    • Gouda, H.1    Torigoe, H.2    Saito, A.3    Sato, M.4    Arata, Y.5    Shimada, I.6
  • 15
  • 16
    • 0026611082 scopus 로고
    • 1H NMR assignments and secondary structure of the streptococcal protein G B2-domain
    • 1H NMR assignments and secondary structure of the streptococcal protein G B2-domain, Biochemistry 31, 3604-3611.
    • (1992) Biochemistry , vol.31 , pp. 3604-3611
    • Orban, J.1    Alexander, P.2    Bryan, P.3
  • 18
    • 0026764471 scopus 로고
    • Thermodynamic analysis of the folding of the streptococcal protein G IgG-binding domains B1 and B2: Why small proteins tend to have high denaturation temperatures
    • Alexander, P., Fahnestock, S., Lee, T., Orban, J., and Bryan, P. (1992) Thermodynamic analysis of the folding of the streptococcal protein G IgG-binding domains B1 and B2: Why small proteins tend to have high denaturation temperatures, Biochemistry 31, 3597-3603.
    • (1992) Biochemistry , vol.31 , pp. 3597-3603
    • Alexander, P.1    Fahnestock, S.2    Lee, T.3    Orban, J.4    Bryan, P.5
  • 19
    • 0028608099 scopus 로고
    • The stability and unfolding of an IgG binding protein based upon the B domain of protein A from Staphylococcus aureus probed by tryptophan substitution and fluorescence spectroscopy
    • Bottomley, S. P., Popplewell, A. G., Scawen, M., Wan, T., Sutton, B. J., and Gore, M. G. (1994) The stability and unfolding of an IgG binding protein based upon the B domain of protein A from Staphylococcus aureus probed by tryptophan substitution and fluorescence spectroscopy, Protein Eng. 7, 1463-1470.
    • (1994) Protein Eng. , vol.7 , pp. 1463-1470
    • Bottomley, S.P.1    Popplewell, A.G.2    Scawen, M.3    Wan, T.4    Sutton, B.J.5    Gore, M.G.6
  • 20
    • 0030755502 scopus 로고    scopus 로고
    • Absence of a stable intermediate on the folding pathway of protein A
    • Bai, Y., Karimi, A., Dyson, H. J., and Wright, P. E. (1997) Absence of a stable intermediate on the folding pathway of protein A, Protein Sci. 6, 1449-1457.
    • (1997) Protein Sci. , vol.6 , pp. 1449-1457
    • Bai, Y.1    Karimi, A.2    Dyson, H.J.3    Wright, P.E.4
  • 21
    • 0028864596 scopus 로고
    • The GA module, a mobile albumin-binding bacterial domain, adopts a three-helix-bundle structure
    • Johansson, M. U., de Chateau, M., Bjorck, L., Forsen, S., Drakenberg, T., and Wikstrom, M. (1995) The GA module, a mobile albumin-binding bacterial domain, adopts a three-helix-bundle structure, FEBS Lett. 374, 257-261.
    • (1995) FEBS Lett. , vol.374 , pp. 257-261
    • Johansson, M.U.1    De Chateau, M.2    Bjorck, L.3    Forsen, S.4    Drakenberg, T.5    Wikstrom, M.6
  • 22
    • 8744294716 scopus 로고    scopus 로고
    • Engineering subtilisin into a fluoride-triggered processing protease useful for one-step protein purification
    • Ruan, B., Fisher, K. E., Alexander, P. A., Doroshko, V., and Bryan, P. N. (2004) Engineering subtilisin into a fluoride-triggered processing protease useful for one-step protein purification, Biochemistry 43, 14539-14546.
    • (2004) Biochemistry , vol.43 , pp. 14539-14546
    • Ruan, B.1    Fisher, K.E.2    Alexander, P.A.3    Doroshko, V.4    Bryan, P.N.5
  • 23
    • 0029004982 scopus 로고
    • A phage display system for studying the sequence determinants of protein folding
    • Gu, H., Qian, Y., Bray, S. T., Riddle, D. S., Shiau, A. K., and Baker, D. (1995) A phage display system for studying the sequence determinants of protein folding, Protein Sci. 4, 1108-1117.
    • (1995) Protein Sci. , vol.4 , pp. 1108-1117
    • Gu, H.1    Qian, Y.2    Bray, S.T.3    Riddle, D.S.4    Shiau, A.K.5    Baker, D.6
  • 24
    • 0031733866 scopus 로고    scopus 로고
    • Stabilizing the subtilisin BPN′ pro-domain by phage display selection: How restrictive is the amino acid code for maximum protein stability?
    • Ruan, B., Hoskins, J., Wang, L., and Bryan, P. N. (1998) Stabilizing the subtilisin BPN′ pro-domain by phage display selection: How restrictive is the amino acid code for maximum protein stability? Protein Sci. 7, 2345-2353.
    • (1998) Protein Sci. , vol.7 , pp. 2345-2353
    • Ruan, B.1    Hoskins, J.2    Wang, L.3    Bryan, P.N.4
  • 25
    • 0028236501 scopus 로고
    • Hydrogen-deuterium exchange in the free and immunoglobulin G-bound Protein G B-domain
    • Orban, J., Alexander, P., and Bryan, P. (1994) Hydrogen-deuterium exchange in the free and immunoglobulin G-bound Protein G B-domain, Biochemistry 33, 5702-5710.
    • (1994) Biochemistry , vol.33 , pp. 5702-5710
    • Orban, J.1    Alexander, P.2    Bryan, P.3
  • 26
    • 0025112794 scopus 로고
    • Searching forpeptide ligands using an epitope library
    • Scott, J. K., and Smith, G. P. (1990) Searching forpeptide ligands using an epitope library, Science 249, 386-390.
    • (1990) Science , vol.249 , pp. 386-390
    • Scott, J.K.1    Smith, G.P.2
  • 27
    • 0027266779 scopus 로고
    • Libraries of peptides displayed on filamentous phage
    • Smith, G. P., and Scott, J. K. (1993) Libraries of peptides displayed on filamentous phage, Methods Enzymol. 217, 228-257.
    • (1993) Methods Enzymol. , vol.217 , pp. 228-257
    • Smith, G.P.1    Scott, J.K.2
  • 28
    • 0027195207 scopus 로고
    • Mutational analysis of the interaction between staphylococcal protein A and human IgG1
    • Cedergren, L., Andersson, R., Jansson, B., Uhlen, M., and Nilsson, B. (1993) Mutational analysis of the interaction between staphylococcal protein A and human IgG1, Protein Eng. 6, 441-448.
    • (1993) Protein Eng. , vol.6 , pp. 441-448
    • Cedergren, L.1    Andersson, R.2    Jansson, B.3    Uhlen, M.4    Nilsson, B.5
  • 29
    • 0032777649 scopus 로고    scopus 로고
    • Dissection of the protein G B1 domain binding site for human IgG Fc fragment
    • Sloan, D. J., and Hellinga, H. W. (1999) Dissection of the protein G B1 domain binding site for human IgG Fc fragment, Protein Sci. 8, 1643-1648.
    • (1999) Protein Sci. , vol.8 , pp. 1643-1648
    • Sloan, D.J.1    Hellinga, H.W.2
  • 31
    • 0027411181 scopus 로고
    • Thermodynamic β-sheet propensities measured using a zinc-finger host peptide
    • Kim, C. A., and Berg, J. M. (1993) Thermodynamic β-sheet propensities measured using a zinc-finger host peptide, Nature 362, 267-270.
    • (1993) Nature , vol.362 , pp. 267-270
    • Kim, C.A.1    Berg, J.M.2
  • 32
    • 0028176595 scopus 로고
    • Measurement of the β-sheet-forming propensities of amino acids
    • Minor, D. L., Jr., and Kim, P. S. (1994) Measurement of the β-sheet-forming propensities of amino acids, Nature 367, 660-663.
    • (1994) Nature , vol.367 , pp. 660-663
    • Minor Jr., D.L.1    Kim, P.S.2
  • 33
    • 0028175780 scopus 로고
    • A thermodynamic scale for the β-sheet forming tendencies of the amino acids
    • Smith, C. K., Withka, J. M., and Regan, L. (1994) A thermodynamic scale for the β-sheet forming tendencies of the amino acids, Biochemistry 33, 5510-5517.
    • (1994) Biochemistry , vol.33 , pp. 5510-5517
    • Smith, C.K.1    Withka, J.M.2    Regan, L.3
  • 34
    • 0001059847 scopus 로고
    • Thermodynamics of protein denaturation. II. A model of reversible denaturation and interpretations regarding the stability of chymotrypsinogen
    • Brandts, J. F. (1964) Thermodynamics of protein denaturation. II. A model of reversible denaturation and interpretations regarding the stability of chymotrypsinogen, J. Am. Chem. Soc. 86, 4302-4314.
    • (1964) J. Am. Chem. Soc. , vol.86 , pp. 4302-4314
    • Brandts, J.F.1
  • 35
    • 0014226043 scopus 로고
    • Thermodynamics of the unfolding of β-lactoglobulin A in aqueous urea solutions between 5 and 55°
    • Pace, C. N., and Tanford, C. (1968) Thermodynamics of the unfolding of β-lactoglobulin A in aqueous urea solutions between 5 and 55°, Biochemistry 7, 198-208.
    • (1968) Biochemistry , vol.7 , pp. 198-208
    • Pace, C.N.1    Tanford, C.2
  • 36
    • 0016224361 scopus 로고
    • A thermodynamic approach to the problem of stabilization of globular protein structure: A calorimetric study
    • Privalov, P. L., and Khechinashvili, N. N. (1974) A thermodynamic approach to the problem of stabilization of globular protein structure: A calorimetric study, J. Mol. Biol. 86, 665-684.
    • (1974) J. Mol. Biol. , vol.86 , pp. 665-684
    • Privalov, P.L.1    Khechinashvili, N.N.2
  • 37
    • 0018588511 scopus 로고
    • Stability of proteins, small globular proteins
    • Privalov, P. L. (1979) Stability of proteins, small globular proteins, Adv. Protein Chem. 33, 167-241.
    • (1979) Adv. Protein Chem. , vol.33 , pp. 167-241
    • Privalov, P.L.1
  • 38
    • 0023442217 scopus 로고
    • Protein stability curves
    • Becktel, W. J., and Schellman, J. A. (1987) Protein stability curves, Biopolymers 26, 1859-1877.
    • (1987) Biopolymers , vol.26 , pp. 1859-1877
    • Becktel, W.J.1    Schellman, J.A.2
  • 39
    • 0024356301 scopus 로고
    • Rapid measurement of binding constants and heats of binding using a new titration calorimeter
    • Wiseman, T., Williston, S., Brandts, J. F., and Lin, L.-N. (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter, Anal. Biochem. 179, 131-137.
    • (1989) Anal. Biochem. , vol.179 , pp. 131-137
    • Wiseman, T.1    Williston, S.2    Brandts, J.F.3    Lin, L.-N.4
  • 40
    • 0029881326 scopus 로고    scopus 로고
    • Towards meeting the Paracelsus Challenge: The design, synthesis, and characterization of paracelsin-43, an α-helical protein with over 50% sequence identity to an all-β protein
    • Jones, D. T., Moody, C. M., Uppenbrink, J., Viles, J. H., Doyle, P. M., Harris, C. J., Pearl, L. H., Sadler, P. J., and Thornton, J. M. (1996) Towards meeting the Paracelsus Challenge: The design, synthesis, and characterization of paracelsin-43, an α-helical protein with over 50% sequence identity to an all-β protein, Proteins 24, 502-513.
    • (1996) Proteins , vol.24 , pp. 502-513
    • Jones, D.T.1    Moody, C.M.2    Uppenbrink, J.3    Viles, J.H.4    Doyle, P.M.5    Harris, C.J.6    Pearl, L.H.7    Sadler, P.J.8    Thornton, J.M.9
  • 41
    • 0033555717 scopus 로고    scopus 로고
    • Exploring the conformational properties of the sequence space between two proteins with different folds: An experimental study
    • Blanco, F. J., Angrand, I., and Serrano, L. (1999) Exploring the conformational properties of the sequence space between two proteins with different folds: An experimental study, J. Mol. Biol. 255, 741-753.
    • (1999) J. Mol. Biol. , vol.255 , pp. 741-753
    • Blanco, F.J.1    Angrand, I.2    Serrano, L.3
  • 43
    • 0032006183 scopus 로고    scopus 로고
    • A hybrid sequence approach to the paracelsus challenge
    • Yuan, S. M., and Clarke, N. D. (1998) A hybrid sequence approach to the paracelsus challenge, Proteins 30, 136-143.
    • (1998) Proteins , vol.30 , pp. 136-143
    • Yuan, S.M.1    Clarke, N.D.2
  • 44
    • 0000785193 scopus 로고
    • Biological thermodynamic data for the calibration of differential scanning calorimeters: Heat capacity data on the unfolding transition of ribonuclease A in solution
    • Schwarz, F. P., and Kirchhoff, W. H. (1988) Biological thermodynamic data for the calibration of differential scanning calorimeters: Heat capacity data on the unfolding transition of ribonuclease A in solution, Thermochim. Acta 128, 267-295.
    • (1988) Thermochim. Acta , vol.128 , pp. 267-295
    • Schwarz, F.P.1    Kirchhoff, W.H.2


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