메뉴 건너뛰기




Volumn 23, Issue , 2005, Pages 587-623

An improved search algorithm for optimal multiple-sequence alignment

(1)  Schroedl, Stefan a  

a NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTATIONAL METHODS; DATABASE SYSTEMS; HEURISTIC METHODS; OPTIMAL CONTROL SYSTEMS; SET THEORY;

EID: 27344439683     PISSN: 10769757     EISSN: 10769757     Source Type: Journal    
DOI: 10.1613/jair.1534     Document Type: Article
Times cited : (24)

References (29)
  • 2
    • 0024964655 scopus 로고
    • Gap costs for multiple sequence alignment
    • Altschul, S. F. (1989). Gap costs for multiple sequence alignment. Journal of Theoretical Biology, 138, 297-309.
    • (1989) Journal of Theoretical Biology , vol.138 , pp. 297-309
    • Altschul, S.F.1
  • 3
    • 0000303438 scopus 로고
    • The multiple sequence alignment problem in biology
    • Carrillo, H., & Lipman, D. (1988). The multiple sequence alignment problem in biology. SIAM Journal of Applied Mathematics, 5(48), 1073-1082.
    • (1988) SIAM Journal of Applied Mathematics , vol.5 , Issue.48 , pp. 1073-1082
    • Carrillo, H.1    Lipman, D.2
  • 7
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • Dayhoff, M. O. (Ed.), Washington, B.C. National Biomedical Research Foundation
    • Dayhoff, M. O., Schwartz, R. M., & Orcutt, B. C. (1978). A model of evolutionary change in proteins. In Dayhoff, M. O. (Ed.), Atlas of Protein Sequence and Structure, pp. 345-352, Washington, B.C. National Biomedical Research Foundation.
    • (1978) Atlas of Protein Sequence and Structure , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 8
    • 84945708671 scopus 로고
    • Shortest-path forest with topological ordering
    • Dial, R. B. (1969). Shortest-path forest with topological ordering. Comm. ACM, 12(11), 632-633.
    • (1969) Comm. ACM , vol.12 , Issue.11 , pp. 632-633
    • Dial, R.B.1
  • 9
    • 34147120474 scopus 로고
    • A note on two problems in connection with graphs
    • Dijkstra, E. W. (1959). A note on two problems in connection with graphs.. Numerische Mathematik, 1, 269-271.
    • (1959) Numerische Mathematik , vol.1 , pp. 269-271
    • Dijkstra, E.W.1
  • 10
    • 0029366816 scopus 로고
    • Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment
    • Gupta, S., Kececioglu, J., & Schaeffer, A. (1995). Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment. J. Computational Biology, 2(3), 459-472.
    • (1995) J. Computational Biology , vol.2 , Issue.3 , pp. 459-472
    • Gupta, S.1    Kececioglu, J.2    Schaeffer, A.3
  • 11
    • 0027351056 scopus 로고
    • Efficient methods for multiple sequence alignment with guaranteed error bounds
    • Gusfield, D. (1993). Efficient methods for multiple sequence alignment with guaranteed error bounds. Bull, of Math. Biol., 55(1), 141-154.
    • (1993) Bull, of Math. Biol. , vol.55 , Issue.1 , pp. 141-154
    • Gusfield, D.1
  • 13
    • 0016518550 scopus 로고
    • A linear space algorithm for computing maximal common subsequences
    • Hirschberg, D. S. (1975). A linear space algorithm for computing maximal common subsequences. Comm. ACM, 6(18), 341-343.
    • (1975) Comm. ACM , vol.6 , Issue.18 , pp. 341-343
    • Hirschberg, D.S.1
  • 15
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., Taylor, W. R., & Thornton, J. M. (1992). The rapid generation of mutation data matrices from protein sequences. CABIOS, 3, 275-282.
    • (1992) CABIOS , vol.3 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 16
    • 0000787124 scopus 로고    scopus 로고
    • Improvement of the A* algorithm for multiple sequence alignment
    • Miyano, S., & Takagi, T. (Eds.), Tokyo. Universal Academy Press
    • Kobayashi, H., & Imai, H. (1998). Improvement of the A* algorithm for multiple sequence alignment. In Miyano, S., & Takagi, T. (Eds.), Genome Informatics, pp. 120-130, Tokyo. Universal Academy Press.
    • (1998) Genome Informatics , pp. 120-130
    • Kobayashi, H.1    Imai, H.2
  • 17
    • 0022129301 scopus 로고
    • Depth-first iterative-deepening: An optimal admissible tree search
    • Korf, R. E. (1985). Depth-first iterative-deepening: An optimal admissible tree search. Artificial Intelligence, 27(1), 97-109.
    • (1985) Artificial Intelligence , vol.27 , Issue.1 , pp. 97-109
    • Korf, R.E.1
  • 21
    • 0000149258 scopus 로고
    • Speeding up dynamic programming algorithms for finding optimal lattice paths
    • Spouge, J. L. (1989). Speeding up dynamic programming algorithms for finding optimal lattice paths. SIAM J. Applied Mathematics, 49(5), 1552-1566.
    • (1989) SIAM J. Applied Mathematics , vol.49 , Issue.5 , pp. 1552-1566
    • Spouge, J.L.1
  • 22
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson, J. D., Plewniak, F., & Poch, O. (1999). A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res., 13(27), 2682-2690.
    • (1999) Nucleic Acids Res. , vol.13 , Issue.27 , pp. 2682-2690
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 23
    • 0020494998 scopus 로고
    • Algorithms for approximate string matching
    • Ukkonen, E. (1985). Algorithms for approximate string matching. Information and Control, 64, 110-118.
    • (1985) Information and Control , vol.64 , pp. 110-118
    • Ukkonen, E.1
  • 25
    • 0028679709 scopus 로고
    • On the complexity of multiple sequence alignment
    • Wang, L., & Jiang, T. (1994). On the complexity of multiple sequence alignment. Journal of Computational Biology, 1, 337-348.
    • (1994) Journal of Computational Biology , vol.1 , pp. 337-348
    • Wang, L.1    Jiang, T.2
  • 26
    • 0012314055 scopus 로고    scopus 로고
    • A* with partial expansion for large branching factor problems
    • Yoshizumi, T., Miura, T., &: Ishida, T. (2000). A* with partial expansion for large branching factor problems. In AAAI/IAAI, pp. 923-929.
    • (2000) AAAI/IAAI , pp. 923-929
    • Yoshizumi, T.1    Miura, T.2    Ishida, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.