Phylogenetic relationships of the marsupial genus Hyladelphys based on nuclear gene sequences and morphology

Journal of Mammalogy

Volumn 86, Issue 5, 2005, Pages 853-865

  Jansa, Sharon A ^a   Voss, Robert S ^b  

^a UNIVERSITY OF MINNESOTA   (United States)

^b DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

Author keywords

Didelphidae; Dmp1; Hyladelphys; Irbp; Marsupialia; Morphology; Nuclear genes; Phylogeny; Systematics

Indexed keywords

MARSUPIAL; MORPHOLOGY; PHYLOGENETICS;

CALUROMYINAE; DIDELPHIDAE; DIDELPHINAE; METATHERIA;

EID: 27244456694     PISSN: 00222372     EISSN: None     Source Type: Journal    
DOI: 10.1644/1545-1542(2005)86[853:PROTMG]2.0.CO;2     Document Type: Article

References (35)

1. ALTEKAR, G., S. DWARKADAS, J. P. HUELSENBECK, AND F. RONQUIST. 2004. Parallel metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20:407-415.
2. ARCHER, M. 1976. The dasyurid dentition and its relationship to that of didelphids, thylacinids, borhyaenids (Marsupicarnivora), and peramelids (Peramelina: Marsupialia). Australian Journal of Zoology Supplementary Series 39:1-34.
3. BRESSLAU, E. 1920. The mammary apparatus of the Mammalia in the light of ontogenesis and phylogenesis. Methuen, London, United Kingdom.
4. DE MORAES, D. A. In press. Range extension and first record for Brazil of the rare Hyladelphys kalinowskii (Hershkovitz, 1992) (Didelphimorphia, Didelphidae). Mammalia.
5. FELSENSTEIN, J. 1978. Cases in which parsimony and compatibility methods will be positively misleading. Systematic Zoology 27:401-410.
6. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
7. GARDNER, A. L., AND G. K. CREIGHTON. 1989. A new generic name for Tate's microtarsus group of South American mouse opossums (Marsupialia: Didelphidae). Proceedings of the Biological Society of Washington 102:3-7.
8. HERSHKOVITZ, P. 1992. The South American gracile mouse opossums, genus Gracilinanus Gardner and Creighton, 1989 (Marmosidae, Marsupialia): a taxonomic review with notes on general morphology and relationships. Fieldiana: Zoology (New Series) 39:i-vi, 1-56.
9. HICE, C. L. 2001. Records of a few rare mammals from northeastern Peru. Mammalian Biology 66:317-319.
10. HUELSENBECK, J. 1995. Performance of phylogenetic methods in simulation. Systematic Biology 44:17-48.
11. HUELSENBECK, J. P., AND F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
12. JANSA, S. A., J. F. FORSMAN, AND R. S. VOSS. In press. Different patterns of selection on nuclear genes Irbp and DmpI affect the efficiency but not the outcome of phylogeny estimation for didelphid marsupials. Molecular Phylogenetics and Evolution.
13. JANSA, S. A., AND R. S. VOSS. 2000. Phylogenetic studies on didelphid marsupials I. Introduction and preliminary results from nuclear Irbp gene sequences. Journal of Mammalian Evolution 7:43-77.
14. JANSA, S. A., AND M. WEKSLER. 2004. Phylogeny of muroid rodents: relationships within and among major lineages as determined by Irbp gene sequences. Molecular Phylogenetics and Evolution 31:256-276.
15. KIRSCH, J. A. W., AND M. ARCHER. 1982. Polythetic cladistics, or, when parsimony's not enough: the relationships of carnivorous marsupials. Pp. 595-620 in Carnivorous marsupials (M. Archer, ed.). Vol. 2. Royal Society of New South Wales, Mosman, New South Wales, Australia.
16. KIRSCH, J. A. W., F.-J. LAPOINTE, AND M. S. SPRINGER. 1997. DNA-hybridization studies of marsupials and their implications for metatherian classification. Australian Journal of Zoology 45:211-280.
17. KRAJEWSKI, C., G. R. MOYER, J. T. SIPIORSKI, M. G. FAIN, AND M. WESTERMAN. 2004. Molecular systematics of the enigmatic 'phascolosoricine' marsupials of New Guinea. Australian Journal of Zoology 52:389-415.
18. LUCKETT, W. P., AND N. HONG. 2000. Ontogenetic evidence for dental homologies and premolar replacement in fossil and extant caenolestids (Marsupialia). Journal of Mammalian Evolution 7:109-127.
19. POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
20. SIDDALL, M. E., AND M. F. WHITING. 1999. Long-branch abstractions. Cladistics 15:9-24.
21. SOLARI, S., ET AL. 2001. The small mammals of the lower Urubamba region, Peru. Pp. 171-181 in Urubamba: the biodiversity of a Peruvian rainforest (A. Alonso, F. Dallmeier, and P. Campbell, eds.). Smithsonian Institution Press, Washington, D.C.
22. SPRINGER, M. S., A. BURK, J. R. KAVANAGH, V. G. WADDELL, AND M. J. STANHOPE. 1997. The interphotoreceptor retinoid binding protein gene in therian mammals: implications for higher-level relationships and evidence for loss of function in the marsupial mole. Proceedings of the National Academy of Sciences 94:13754-13759.
23. STANHOPE, M. J., M. R. SMITH, V. G. WADDELL, C. A. PORTER, M. S. SHIVJI, AND M. GOODMAN. 1996. Mammalian evolution and the interphotoreceptor retinoid binding protein (Irbp) gene: convincing evidence for several superordinal clades. Journal of Molecular Evolution 43:83-92.
24. SWOFFORD, D. L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Sunderland, Massachusetts.
25. SWOFFORD, D. L., P. J. WADDELL, J. P. HUELSENBECK, P. G. FOSTER, P. O. LEWIS, AND J. S. ROGERS. 2001. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Systematic Biology 50:525-539.
26. TEMPLE-SMITH, P. 1987. Sperm structure and marsupial phylogeny. Pp. 171-193 in Possums and opossums: studies in evolution (M. Archer (ed.). Surrey Beatty & Sons, Chipping Norton, New South Wales, Australia.
27. THOMAS, O. 1888. Catalogue of the Marsupialia and Monotremata in the collection of the British Museum (Natural History). Trustees of the British Museum (Natural History), London, England.
28. TOYOSAWA, S., C. O'HUIGIN, AND J. KLEIN. 1999. The dentin matrix protein 1 gene of prototherian and metatherian mammals. Journal of Molecular Evolution 48:160-167.
29. VOSS, R. A., A. L. GARDNER, AND S. A. JANSA. 2004. On the relationships of "Marmosa" formosa Shamel, 1930 (Marsupialia: Didelphidae), a phylogenetic puzzle from the Chaco of northern Argentina. American Museum Novitates 3442:1-18.
30. VOSS, R. S., AND S. A. JANSA. 2003. Phylogenetic studies on didelphid marsupials II. Nonmolecular data and new Irbp sequences: separate and combined analyses of didelphine relationships with denser taxon sampling. Bulletin of the American Museum of Natural History 276:1-82.
31. VOSS, R. S., D. P. LUNDE, AND S. A. JANSA. 2005. On the contents of Gracilinanus Gardner and Creighton, 1989, with the description of a previously unrecognized clade of small didelphid marsupials. American Museum Novitates. 3482:1-34.
32. VOSS, R. S., D. P. LUNDE, AND N. B. SIMMONS. 2001. The mammals of Paracou, French Guiana: a neotropical rainforest fauna. Part 1. Nonvolant species. Bulletin of the American Museum of Natural History 263:1-236.
33. WEKSLER, M. 2003. Phylogeny of neotropical oryzomyine rodents (Muridae: Sigmodontinae) based on the nuclear Irbp exon. Molecular Phylogenetics and Evolution 29:331-349.
34. WROE, S. 1997. A reexamination of proposed morphology-based synapomorphies for the families of Dasyuromorphia (Marsupialia). I. Dasyuridae. Journal of Mammalian Evolution 4:19-52.
35. WROE, S., M. EBACH, S. AHYONG, C. DE MUIZON, AND J. MUIRHEAD. 2000. Cladistic analysis of dasyuromorphian (Marsupialia) phytogeny using cranial and dental characters. Journal of Mammalogy 81:1008-1024.