A novel transcriptome subtraction method for the detection of differentially expressed genes in highly complex eukaryotes

Nucleic Acids Research

Volumn 33, Issue 16, 2005, Pages 1-5

  Li, L ^c   Techel, D ^a   Gretz, N ^c   Hildebrandt, A ^b  

^a Zentralkrankenhaus   (Germany)

^b UNIVERSITY OF BREMEN   (Germany)

^c UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME; NUCLEASE S1;

ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; EUKARYOTE; GENE EXPRESSION; GENE ISOLATION; GENE TARGETING; GENOME; GENOME ANALYSIS; INTERMETHOD COMPARISON; NONHUMAN; PRIORITY JOURNAL; QUALITATIVE ANALYSIS; SENSITIVITY ANALYSIS; SOLANUM; SUBTRACTIVE HYBRIDIZATION; EVALUATION; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENETICS; GENOMICS; METABOLISM; METHODOLOGY; POTATO;

EUKARYOTA; SOLANUM;

ASPERGILLUS NUCLEASE S1; GENE EXPRESSION PROFILING; GENOMICS; SOLANUM TUBEROSUM; TRANSCRIPTION, GENETIC;

EID: 27144541801     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gni136     Document Type: Article

References (10)

1. Liang,P., Zhu,W., Zhang,X., Guo,Z., O'Connell,R.P., Averboukh,L., Wang,F. and Pardee,A.B. (1994) Differential display using one-base anchored oligo-dT primers. Nucleic Acids Res., 22, 5763-5764.
2. Heller,M.J. (2002) DNA microarray technology: Devices, systems, and applications. Annu. Rev. Biomed. Eng., 4, 129-153.
3. Velculescu,V.E., Zhang,L., Vogelstein,B. and Kinzler,K.W. (1995) Serial analysis of gene expression. Science, 270, 484-487.
4. Lisitsyn,N. and Wigler,M. (1993) Cloning the differences between two complex genomes. Science, 259, 946-951.
5. Diatchenko,L., Lau,Y.F., Campbell,A.P., Chenchik,A., Moqadam,F., Huang,B., Lukyanov,S., Lukyanov,K., Gurskaya,N., Sverdlov,E.D. and Siebert,P.D. (1996) Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl Acad. Sci. USA, 93, 6025-6030.
6. Luo,J.H., Puc,J.A., Slosberg,E.D., Yao,Y., Bruce,J.N., Wright,T.C.,Jr, Becich,M.J. and Parsons,R. (1999) Differential subtraction chain, a method for identifying differences in genomic DNA and mRNA. Nucleic Acids Res., 27, e24.
7. Chomczynski,P. and Sacchi,N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 162, 156-159.
8. Bishop,J.O., Morton,J.G., Rosbash,M. and Richardson,M. (1974) Three abundance classes in HeLa cell messenger RNA. Nature, 250, 199-204.
9. Hastie,N.D. and Bishop,J.O. (1976) The expression of three abundance classes of messenger RNA in mouse tissues. Cell, 9, 761-774.
10. Rebrikov,D.V., Britanova,O.V., Gurskaya,N.G., Lukyanov,K.A., Tarabykin,V.S. and Lukyanov,S.A. (2000) Mirror orientation selection (MOS): A method for eliminating false positive clones from libraries generated by suppression subtractive hybridiztion. Nucleic Acids Res., 28, e90.