Genetic mapping of AFLP markers in Japanese bunching onion (Allium fistulosum)

Euphytica

Volumn 144, Issue 3, 2005, Pages 255-263

  Ohara, Takayoshi ^a   Song, Yeon Sang ^a,b   Tsukazaki, Hikaru ^a   Wako, Tadayuki ^a   Nunome, Tsukasa ^a   Kojima, Akio ^a  

^a NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

^b National Institute of Crop Science   (South Korea)

Author keywords

AFLP; Allium fistulosum; Japanese bunching onion; Linkage map; SSR

Indexed keywords

ALLIUM CEPA; ALLIUM FISTULOSUM;

EID: 26944496404     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-005-6768-5     Document Type: Article

References (28)

1. 1 hybrid. Genome 33: 854-866.
2. Becker, J., P. Vos, M. Kuiper, F. Salamini & M. Heun, 1995. Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249: 65-73.
3. Bradeen, J.M. & M.J. Havey, 1995. Randomly amplified polymorphic DNA in bulb onion and its use to assess inbred integrity. J Am Soc Hortic Sci 120: 752-758.
4. Brummer, E.C., J.H. Bouton & G. Kochert, 1993. Development of an RFLP map in diploid alfalfa. Theor Appl Genet 86: 329-332.
5. Fischer, D. & K. Bachmann, 2000. Onion microsatellites for germplasm analysis and their use in assessing intra- and interspecific relatedness within the subgenus Rhizirideum. Theor Appl Genet 101: 153-164.
6. Ford-Lloyd, B.V. & S.J. Armstrong, 1993. Welsh onion Allium fistulosum L. In: G. Kalloo & B.O. Bergh (Eds.), Genetic Improvement of Vegetable Crops, pp. 51-58. Pergamon, Oxford.
7. Han, T.H., H.J. van Eck, M.J. De Jeu & E. Jacobsen, 1999. Optimization of AFLP fingerprinting of organisms with a large-sized genome: A study on Alstroemeria spp. Theor Appl Genet 98: 465-471.
8. Hanelt, P., 1990. Taxonomy, evolution, and history. In: H.D. Rabinowitch & J.L. Brewster (Eds.), Onions and Allied Crops. Vol. I. Botany, Physiology, and Genetics, pp. 1-26. CRC, Boca Raton, FL.
9. Inden, H. & T. Asahira, 1990. Japanese bunching onion (Allium fistulosum L.). In: H.D. Rabinowitch & J.L. Brewster (Eds.), Onions and Allied Crops. Vol. III. Biochemistry, Food Science, and Minor Crops, pp. 159-178. CRC, Boca Raton, FL.
10. Jones, C.J., K.J. Edwards, S. Castaglione, M.O. Winfield, F. Sala, C. van de Wiel, G. Bredemeijer, B. Vosman, M. Matthes, A. Daly, R. Brettschneider, P. Bettini, M. Buiatti, E. Maestri, A. Malcevschi, N. Marmiroli, R. Aert, G. Volckaert, J. Rueda, R. Linacero, A. Vazquez & A. Karp, 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3: 381-390.
11. Jones, E.S., L.J. Hughes, M.C. Drayton, M.T. Abberton, T.P.T. Michaelson-Yeates, C. Bowen & J.W. Forster, 2003. An SSR and AFLP molecular marker-based genetic map of white clover (Trifolium repens L.). Plant Sci 165: 531-539.
12. King, J.J., J.M. Bradeen, O. Bark, J.A. McCallum & M.J. Havey, 1998. A low-density genetic map of onion reveals a role for tandem duplication in the evolution of an extremely large diploid genome. Theor Appl Genet 96: 52-62.
13. Kosambi, D., 1944. The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
14. Kuhl, J.C., F. Cheung, Q. Yuan, W. Martin, Y. Zewdie, J. McCallum, A. Catanach, P. Rutherford, K.C. Sink, M. Jenderek, J.P. Prince, C.D. Town & M.J. Havey, 2004. A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales. Plant Cell 16: 114-125.
15. Labani, R.M. & T.T. Elkington, 1987. Nuclear DNA variation in the genus Allium L. (Liliaceae). Heredity 59: 119-128.
16. Lander, E., P. Green, J. Abrahamson, A. Barlow, M. Daly, S. Lincoln & L. Newburg, 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
17. MAFF, Japan, 2001. Marketing and consumption statistics. http://www.maff.go.jp/esokuhou/index.html.
18. McCallum, J., D. Leite, M. Pither-Joyce & M.J. Havey, 2001. Expressed sequence markers for genetic analysis of bulb onion (Allium cepa L.) Theor Appl Genet 103: 979-991.
19. 1 hybrids produced by utilizing cytoplasmic male sterility and inbreeding depression of inbred line in Welsh onion. (in Japanese with English summary). Jpn J Breed 35: 175-182.
20. Ohara, T., T. Wako & A. Kojima, 2004. Diallel analysis of seedling growth in Japanese bunching onion (Allium fistulosum L.) (in Japanese with English summary). Breed Res 6: 11-19.
21. 1 hybrids of Japanese bunching onion (Allium fistulosum) (in Japanese with English summary). J Jpn Soc Hortic Sci 74: 68-77.
22. Song, Y.-S., K. Suwabe, T. Wako, T. Ohara, T. Nunome & A. Kojima, 2004. Development of microsatellite markers in bunching onion (Allium fistulosum L.). Breed Sci 54: 361-365.
23. Ukai, Y., 2000. Genetic analysis at the genomic level: Map and QTL. University of Tokyo Press, Tokyo.
24. van Heusden, A.W., J.W. van Ooijen, R.V. van Ginkel, W.H.J. Verbeek, W.A. Wietsma & C. Kik, 2000. A genetic map of an interspecific cross Allium based on amplified fragment length polymorphism (AFLP™) markers. Theor Appl Genet 100: 118-126.
25. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper & M. Zabeau, 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
26. Wako, T., T. Ohara, Y.-S. Song & A. Kojima, 2002a. Development of SSR markers in Japanese bunching onion. (in Japanese). Breed Res 4(Suppl. 1): 83.
27. Wako, T., M. Shigyo, Y. Tashiro, S. Kataoka, T. Ohara & A. Kojima, 2002b. Development of chromosome-specific CAPS markers in shallot. (in Japanese). J Jpn Soc Hortic Sci 71(Suppl. 1): 348.
28. Wang, Y.-H., C.E. Thomas & R.A. Dean, 1997. A genetic map of melon (Cucumis melo L.) based on amplified fragment length polymorphism (AFLP) markers. Theor Appl Genet 95: 791-798.