Phylogeography and demography of Guianan harlequin toads (Atelopus): Diversification within a refuge

Molecular Ecology

Volumn 14, Issue 10, 2005, Pages 3017-3031

  Noonan, Brice P ^a,c   Gaucher, Philippe ^b  

^a UNIVERSITY OF TEXAS AT ARLINGTON   (United States)

^b Mission Pour la Creation du Parc de la Guyane   (France)

^c BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

Atelopus; Gene flow; Phylogeography; Pleistocene refugia; Speciation

Indexed keywords

ANURA; ATELOPUS; ATELOPUS BARBOTINI; ATELOPUS FLAVESCENS; ATELOPUS FRANCISCUS; ATELOPUS HOOGMOEDI; ATELOPUS SPUMARIUS;

CYTOCHROME B; MITOCHONDRIAL DNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CHEMISTRY; DNA SEQUENCE; FRENCH GUIANA; FROGS AND TOADS; GENETIC VARIABILITY; GENETICS; GUYANA; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION DYNAMICS; SURINAME; TROPIC CLIMATE;

ANIMALS; ANURA; CYTOCHROMES B; DNA, MITOCHONDRIAL; FRENCH GUIANA; GUYANA; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; SURINAME; TROPICAL CLIMATE; VARIATION (GENETICS);

EID: 26944465440     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02624.x     Document Type: Article

References (53)

1. Beerli P ( 2004) Effect of unsampled populations on the estimation of population sizes and migration rates between sampled populations. Molecular Ecology, 13, 827 836.
2. Bush MB ( 1994) Amazonian speciation: a necessarily complex model. Journal of Biogeography, 21, 5 17.
3. Clement X Posada D Crandall K ( 2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
4. Cope ED ( 1871) Ninth reference to the herpetology of tropical America. Proceedings of the Academy of Natural Sciences, Philadelphia, 20, 96 140.
5. Daly JW Gusovsky F Myers CW Yotsu-Yamashita M Yasumoto T ( 1994) First occurrence of tetrodotoxin in a dendrobatid frog (Colostethus inguinalis), with further reports for the bufonid genus Atelopus. Toxicon, 32, 279 285.
6. Durant P Arellano EJ ( 1995) Importancia de la biodiversidad para el género jumano. In : La Biodiversidad Neotropical y la Amenaza de las Extinciones (ed. Alonso ME 4, 71 93. Cuadernos Química Ecologíca Universidad Los Andes Mérida.
7. Excoffier L Smouse PE Quattro JM ( 1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial restriction data. Genetics, 131, 479 491.
8. Fu Y-X ( 1997) Statistical tests of neutrality of mutations against population growth, hitchhicking and background selection. Genetics, 147, 915 925.
9. Haffer J ( 1969) Speciation in Amazonian forest birds. Science, 165, 131 137.
10. Harpending RC ( 1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591 600.
11. Hasegawa M Kishino H Yano T-A ( 1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160 174.
12. Hey J Nielsen R ( 2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747 760.
13. Hooghiemstra H ( 1984) Vegetational and climactic history of the high plain of Bogota, Colombia: a continuous record of the last 3.5 million years. Gantner Verlag, Vaduz.
14. Hooghiemstra H ( 1989) Wuaternary and upper-Pliocene glaciations and forest development in the tropical Andes: evidence from a long high-resolution pollen record from the sedimentary basin of Bogota, Colombia. Palaeogeography, Palaeoclimatology, Palaeoecology, 72, 11 26.
15. Huber O Foster MN (eds) ( 2003) Conservation Priorities for the Guayana Shield. Conservation International, Washington, D.C.
16. Huelsenbeck JP Ronquist F ( 2001) mrbayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
17. Kok PJR ( 2000) A survey of the anuran fauna of Montagne Belvédère, county of Saül, French Guiana: field list with comments on taxonomy and ecology. British Herpetological Society Bulletin, 71, 6 26.
18. La Marca E ( 1995) Crisis de biodiversidad en anfibios de Venezuela: Estudios de casos. In : La Biodiversidad Neotropical y la Amenaza de las Extinciones (ed. Alonso ME 4, 47 70. Cuadernos Química Ecologíca Universidad Los Andes Mérida
19. La Marca E Lötters S ( 1997) Monitoring of declines in Venezuelan Atelopus (Amphibia: Anura: Bufonidae). In : Herpetologia Bonnensis (eds Böhme W Bischoff W Ziegler T pp. 207 213. Societas Europeae Herpetologicae, Bonn, Germany.
20. La Marca E Reinthaler HP ( 1991) Population changes in Atelopus species of the Cordillera de Mérida, Venezuela. Herpetological Review, 22, 125 128.
21. Leaché AD Reeder TW ( 2001) Molecular systematics of the eastern fence lizard (Sceloporus undulates): a comparison of parsimony, likelihood, and Bayesian approaches. Systematic Biology, 51, 44 68.
22. Lescure J ( 1973) Notes biogéographiques sur quelques Amphibiens du bassin supérieur du Maroni. Comte Rendu Sommaire des Séances de la Société de Biogéographie, Paris, 439, 53 63.
23. Lescure J ( 1973 1974 Notes biogéographiques sur quelques amphibiens du bassin supérieur du Maroni. Comte Rendu Sommaire des Séances de la Société de Biogéographie, Paris, 439, 53 63.
24. Lescure J ( 1981) Contribution à l'étude des amphibiens de Guyane française. VIII. Validation d'Atelopusspumarius Cope, 1871, et désignation d'un néotype. Description d'Atelopus spumarius barbotini nov. ssp. Données étho-écologiques et biogéographiques sur les Atelopus du groupe flavescens (Anoures, Bufonidés). Bulletin de Muséum National d'Histoire Naturelle Paris, 4 ( 3 893 910.
25. Lescure J Gasc JP ( 1986) Partage de l'espace forestier par les amphibiens et les reptiles en Amazonie du nord-ouest. Caldasia, 15, 707 723.
26. Lescure J Marty C ( 2000) Atlas des Amphibiens de Guyane. M.N.H.N. Patrimon. Nat. Vol. 45.
27. Lötters S ( 1996) The Neotropical toad genus Atelopus. Checklist - Biology - Distribution. M. Vences & F. Glaw Verlags GbR. Köln, Germany.
28. Lötters S De la Riva I ( 1998) Redescription of Atelopus tricolor Boulenger from southeastern Peru and adjacent Bolivia, with comments on related forms. Journal of Herpetology, 32, 481 488.
29. Lötters S Haas W Schick S Böohme W ( 2002) On the systematics of the harlequin frogs (Amphibia: Bufonidae: Atelopus) from Amazonia. II: Redescription of Atelopus pulcher (Boulenger, 1882) from the eastern Andean versant in Peru. Salamandra, 38, 165 184.
30. Lougheed SC Gascon C Jones DA Bogart JP Boag PT ( 1999) Ridges and rivers: a test of competing hypotheses of Amazonian diversification using a dart-poison frog (Epipedobates femoralis). Proceedings of the Royal Society of London, 266, 1829 1835.
31. Lynch JD ( 1993) A new harlequin frog from the Cordillera Oriental of Colombia (Anura, Bufonidae, Atelopus). Alytes, 11, 77 87.
32. Macey JR Larson A Ananjeva NB Papenfuss TJ ( 1997) Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. Journal of Molecular Evolution, 44, 660 674.
33. Nielsen R Wakeley J ( 2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics, 158, 885 896.
34. Peters JA ( 1973) The frog genus Atelopus in Ecuador (Anura: Bufonidae). Smithsonian Contributions to Zoology, 145, 1 49.
35. Posada D Crandall KA ( 1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
36. Posada D Crandall KA Templeton AR ( 2000) GeoDis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
37. Pounds JA Crump ML ( 1994) Amphibian declines and climate disturbance: the case of the golden toad and the harlequin frog. Conservation Biology, 8, 72 85.
38. Ramos-Onsins SE Rozas J ( 2002) Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution, 19, 2092 2100.
39. Rivero JA ( 1968) More on the Atelopus (Amphibia, Salientia) from western South America. Caribbean Journal of Science, 8, 19 29.
40. Rodríguez LO Duellman WE ( 1994) Guide to the frogs of the Iquitos region, Amazonian Peru. University of Kansas Museum of Natural History Special Publications, 22, 1 80.
41. Ron SR Duellman WE Coloma LA Bustamante MR ( 2003) Population decline of the Jambato toad Atelopus ignescens (Anura: Bufonidae) in the Andes of Ecuador. Journal of Herpetology, 37, 116 126.
42. Sambrook J Fritsch EF Maniatis T ( 1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Plainview, NY.
43. Schneider S Excoffier L ( 1999) Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA. Genetics, 152, 1079 1089.
44. Schneider S Roessli D Excoffier L ( 2000) arlequin v. 2.000: a software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
45. Shimodaira H Hasegawa M ( 1999) Multiple comparison of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114 1116.
46. Swofford DL ( 2001) paup. Phylogenetic Analysis Using Parsimony (*and other methods), Version 4b10. Sinauer, Sunderland, MA.
47. Tajima F ( 1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 595 595.
48. Templeton AR Crandall KA Sing CF ( 1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619 633.
49. Templeton AR Routman E Phillips CA ( 1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander. Ambystoma tigrinum. Genetics, 140, 767 782.
50. Templeton AR ( 1998) Nested clade analysis of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
51. Vences M Chiari Y Raharivololoniaina L Meyer A ( 2004) High mitochondrial diversity within and among populations of Malagasy poison frogs. Molecular Phylogenetics and Evolution, 30, 295 307.
52. Vial JL Saylor L ( 1993) The status of amphibian populations. Declining Population Task Force, IUCN/SSC, Working Document, 1, 1 98.
53. ST not equal to 1/(4Nm+ 1). Heredity, 82 ( 2 117 125.