N-terminal isotope tagging with propionic anhydride: Proteomic analysis of myogenic differentiation of C2C12 cells

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 826, Issue 1-2, 2005, Pages 91-107

  Nam, Hyung Wook ^a   Simpson, Richard ^b   Kim, Yu Sam ^a  

^a Yonsei University   (South Korea)

^b WALTER AND ELIZA HALL INSTITUTE OF MEDICAL RESEARCH   (Australia)

Author keywords

Myogenesis; N terminal isotope tagging (NIT); nanoLC ESI MS MS; Propionylation; Quantitative proteomics

Indexed keywords

CELLS; CYTOLOGY; ERROR ANALYSIS; ISOTOPES; LIQUID CHROMATOGRAPHY; VITAMINS;

MYOGENESIS; N-TERMINAL ISOTOPE TAGGING (NIT); NANOLC ESI/MS/MS; PROPIONYLATION; QUANTITATIVE PROTEOMICS;

PROTEINS;

ACID ANHYDRIDE; ALBUMIN; PEPTIDE; PROPIONIC ACID ANHYDRIDE; PROTEIN; UNCLASSIFIED DRUG; VIMENTIN;

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CELL LYSATE; CONTROLLED STUDY; ISOTOPE ANALYSIS; MOUSE; MUSCLE DEVELOPMENT; MUSCLE FIBRIL; MYOBLAST; N TERMINAL ISOTOPE TAGGING; NONHUMAN; PRIORITY JOURNAL; PROTEOMICS; QUANTITATIVE ANALYSIS;

AMINO ACID SEQUENCE; ANHYDRIDES; ANIMALS; CELL DIFFERENTIATION; CELLS, CULTURED; DEUTERIUM; ISOTOPE LABELING; MICE; MOLECULAR SEQUENCE DATA; MYOBLASTS; PEPTIDE FRAGMENTS; PROPIONATES; PROTEOMICS; SERUM ALBUMIN, BOVINE; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TRYPSIN; VIMENTIN;

ANIMALIA;

EID: 26844562948     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2005.07.039     Document Type: Article

References (43)

1. H. Yamamoto, S. Bitoh, M. Torii, and S. Fujimoto J. Immunol. 130 1983 1038
2. W.F. Patton J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 771 2002 3
3. A.D. Hess, C.J. Thoburn, W. Chen, and A.E. Bright Transplantation 75 2003 1361
4. D.L. Doolan, J.C. Aguiar, W.R. Weiss, A. Sette, P.L. Felgner, D.P. Regis, P. Quinones-Casas, J.R. Yates 3rd, P.L. Blair, T.L. Richie, S.L. Hoffman, and D.J. Carucci J. Exp. Biol. 206 2003 3789
5. G. Jacobson, and P. Karsnas Electrophoresis 11 1990 46
6. D. Arnott, A. Kishiyama, E.A. Luis, S.G. Ludlum, J.C. Marsters Jr., and J.T. Stults Mol. Cell Proteomics 1 2002 148
7. M.J. MacCoss, and J.R. Yates 3rd Curr. Opin. Clin. Nutr. Metab. Care 4 2001 369
8. W.H. McDonald, and J.R. Yates 3rd Dis Markers 18 2002 99
9. W.H. McDonald, and J.R. Yates 3rd Traffic 1 2000 747
10. P.G. Righetti, A. Castagna, F. Antonucci, C. Piubelli, D. Cecconi, N. Campostrini, G. Zanusso, and S. Monaco Clin. Chem. Lab. Med. 41 2003 425
11. J. Yates 3rd, and M. Snyder Curr. Opin. Chem. Biol. 8 2004 1
12. J.R. Yates 3rd Ann. Rev. Biophys. Biomol. Struct. 33 2004 297
13. W. Zhu, C.I. Reich, G.J. Olsen, C.S. Giometti, and J.R. Yates 3rd J. Proteome Res. 3 2004 538
14. B. Devreese, K.P. Janssen, F. Vanrobaeys, F. Van Herp, G.J. Martens, and J. Van Beeumen J. Chromatogr. A 976 2002 113
15. T. Kosaka, T. Yoneyama-Takazawa, K. Kubota, T. Matsuoka, I. Sato, T. Sasaki, and Y. Tanaka J. Mass Spectrom. 38 2003 1281
16. E. Nagele, M. Vollmer, and P. Horth J. Biomol. Tech. 15 2004 134
17. E. Varesio, S. Rudaz, K.H. Krause, and J.L. Veuthey J. Chromatogr. A 974 2002 135
18. M. Vollmer, E. Nagele, and P. Horth J. Biomol. Tech. 14 2003 128
19. P.A. Everley, J. Krijgsveld, B.R. Zetter, and S.P. Gygi Mol. Cell Proteomics 3 2004 729
20. S. Gu, S. Pan, E.M. Bradbury, and X. Chen J. Am. Soc. Mass Spectrom. 14 2003 1
21. D.K. Han, J. Eng, H. Zhou, and R. Aebersold Nat. Biotechnol. 19 2001 946
22. M. Heller, H. Mattou, C. Menzel, and X. Yao J. Am. Soc. Mass Spectrom. 14 2003 704
23. J.L. Hsu, S.Y. Huang, N.H. Chow, and S.H. Chen Anal. Chem. 75 2003 6843
24. S. Julka, and F. Regnier J. Proteome Res. 3 2004 350
25. W.A. Tao, and R. Aebersold Curr. Opin. Biotechnol. 14 2003 110
26. Y. Oda, T. Owa, T. Sato, B. Boucher, S. Daniels, H. Yamanaka, Y. Shinohara, A. Yokoi, J. Kuromitsu, and T. Nagasu Anal. Chem. 75 2003 2159
27. S.E. Ong, B. Blagoev, I. Kratchmarova, D.B. Kristensen, H. Steen, A. Pandey, and M. Mann Mol. Cell Proteomics 1 2002 376
28. S.E. Ong, L.J. Foster, and M. Mann Methods 29 2003 124
29. J.A. Ranish, E.C. Yi, D.M. Leslie, S.O. Purvine, D.R. Goodlett, J. Eng, and R. Aebersold Nat. Genet. 33 2003 349
30. P.G. Righetti, N. Campostrini, J. Pascali, M. Hamdan, and H. Astner Eur. J. Mass Spectrom. (Chichester Eng.) 10 2004 335
31. X. Yao, A. Freas, J. Ramirez, P.A. Demirev, and C. Fenselau Anal. Chem. 73 2001 2836
32. F. Schmidt, S. Donahoe, K. Hagens, J. Mattow, U.E. Schaible, S.H. Kaufmann, R. Aebersold, and P.R. Jungblut Mol. Cell Proteomics 3 2004 24
33. Y. Lu, P. Bottari, F. Turecek, R. Aebersold, and M.H. Gelb Anal. Chem. 76 2004 4104
34. R. Zhang, and F.E. Regnier J. Proteome Res. 1 2002 139
35. R. Zhang, C.S. Sioma, R.A. Thompson, L. Xiong, and F.E. Regnier Anal. Chem. 74 2002 3662
36. X. Zhang, Q.K. Jin, S.A. Carr, and R.S. Annan Rapid Commun. Mass Spectrom. 16 2002 2325
37. F. Zappacosta, and R.S. Annan Anal. Chem. 76 2004 6618
38. M.W. van Hout, C.M. Hofland, H.A. Niederlander, and G.J. de Jong Rapid Commun. Mass Spectrom. 14 2000 2103
39. H. Lee, E.C. Yi, B. Wen, T.P. Reily, L. Pohl, S. Nelson, R. Aebersold, and D.R. Goodlett J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 803 2004 101
40. F.L. Brancia, M.E. Openshaw, and S. Kumashiro Rapid Commun. Mass Spectrom. 16 2002 2255
41. F.L. Brancia, A. Butt, R.J. Beynon, S.J. Hubbard, S.J. Gaskell, and S.G. Oliver Electrophoresis 22 2001 552
42. N.S. Tannu, V.K. Rao, R.M. Chaudhary, F. Giorgianni, A.E. Saeed, Y. Gao, and R. Raghow Mol. Cell Proteomics 3 2004 1065
43. A.R. Ivanov, L. Zang, and B.L. Karger Anal. Chem. 75 2003 5306