Gene network: Model, dynamics and simulation

Lecture Notes in Computer Science

Volumn 3595, Issue , 2005, Pages 12-21

  Wu, Shiquan ^a   Gu, Xun ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; GRAPH THEORY; MATHEMATICAL MODELS; COMBINATORIAL MATHEMATICS; COMPLEX NETWORKS; DYNAMICS;

COMPLEX BEHAVIOR; GENE DUPLICATION; GENE NETWORKS; GENE-GENE INTERACTIONS; GENOME DUPLICATION; BIOLOGICAL MECHANISMS; DYNAMICAL RANDOM GRAPHS; EVOLUTIONARY DYNAMICS; GENE-GENE INTERACTION; NETWORK DEGREE DISTRIBUTIONS; POWER LAW EXPONENT; VERTEX DEGREE DISTRIBUTIONS;

GENES;

EID: 26844477914     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11533719_4     Document Type: Conference Paper

References (21)

1. Kitano, H.: Systems Biology: A Brief Overview, Science 295(2002)1662-1664.
2. Strogatz, S. H.: Exploring complex networks, Nature, 410(2001)268-276.
3. Oltvai,Z., Barabási,A.-L.: Life's complexity pyramid, Science,298(2002)763-764.
4. Albert, B. and Barabási, A.-L.: Statistical mechanics of complex networks, Review of Modern Physics, 74(2002)47-97.
5. Sali, S.: Functional links between proteins, Nature, 402(1999)23-26.
6. Wagner, A.: The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes, Molecular Biology and Evolution, 18(2001)1283-1292.
7. Wagner, A.: How large protein interaction networks evolve. Proc. R. Soc. Lond., B 270(2003)457-466.
8. Uetz, P., Giot, L., etc.: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae, Nature, 403(2001)623-627.
9. Jeong, H., Tombor, B., Albert, R., Oltvai, Z.N., and Barabási, A.-L.: The large-scale organization of metabolic networks, Nature 407(2000)651-654.
10. Ravasz, E., Somera, A., Mongru, D. A., Oltvai, Z. and Barabási, A.-L.: Hierarchical organization of modularity in metabolic networks, Science, 297(2002)1551-1555.
11. Barabási, A. and Albert, A.-L.: Emergence of scaling in random networks, Science, 286(1999)509-512.
12. Azevedo, R. and Leroi, A. M.: A power law for cells, PNAS, 98(2001)5699-5704.
13. Chung, F., Lu, L., Dewey, T. G., and Galas, D. J.: Duplication Models for Biological Networks, Journal of Computational Biology, 10(2002)677-687.
14. Albert, R., Jeong, H. and Barabási, A.-L.: Diameter of the World Wide Web, Nature, 401(1999)130-131.
15. Chung, F. and Lu, L.: The average distances in random graphs with given expected degrees, PNAS, 99(2002)15879-15882.
16. Givan, M. and Newman, E. J.: Community structure in social and biological networks, PNAS, 99(2002)7821-7826.
17. Watts, D. J. and Strogatz, H.: Collective dynamics of 'small-world' networks, Nature, 393(1998)440-442.
18. Ohno, S.: Evolution by Gene Duplication, Springer, New York (1970).
19. Bhan, A., Galas, D. J. and Dewery, T. G.: A duplication growth model of gene expression network, Bioinformatics, 18(2002)1486-1493.
20. Wolfe, K. and Shields, D.: Molecular evidence for an ancient duplication of the entire yeast genome, Nature, 387(1997)708-13.
21. Stillman, B.: Genomic Views of Genome Duplication, Science, 294(2001)2301-2304.