-
1
-
-
0004026407
-
-
San Francisco, CA: Freeman
-
A. L. Lehninger, D. L. Nelson, and M. M. Cox, Lehninger Principles of Biochemistry, 4th ed. San Francisco, CA: Freeman, 2004.
-
(2004)
Lehninger Principles of Biochemistry, 4th Ed.
-
-
Lehninger, A.L.1
Nelson, D.L.2
Cox, M.M.3
-
3
-
-
13344262673
-
A comprehensive comparison of comparative RNA structure prediction approaches
-
Sep.
-
P. P. Gardner and R. Giegerich, "A comprehensive comparison of comparative RNA structure prediction approaches," BMC Bioinformatics, vol. 5, no. 1, p. 140, Sep. 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 140
-
-
Gardner, P.P.1
Giegerich, R.2
-
4
-
-
0002538639
-
RNA in silico the computational biology of RNA secondary structures
-
C. Flamm, I. L. Hofacker, and P. F. Stadler, "RNA in silico the computational biology of RNA secondary structures," Adv. Complex Syst., vol. 1, pp. 65-90, 1999.
-
(1999)
Adv. Complex Syst.
, vol.1
, pp. 65-90
-
-
Flamm, C.1
Hofacker, I.L.2
Stadler, P.F.3
-
5
-
-
0029025720
-
An APL-programmed genetic algorithm for the prediction of RNA secondary structure
-
F. H. D. van Batenburg, A. P. Gultyaev, and C. W. A. Pleij, "An APL-programmed genetic algorithm for the prediction of RNA secondary structure," J. Theor. Biol., vol. 174, pp. 269-280, 1995.
-
(1995)
J. Theor. Biol.
, vol.174
, pp. 269-280
-
-
Van Batenburg, F.H.D.1
Gultyaev, A.P.2
Pleij, C.W.A.3
-
6
-
-
0345293275
-
A permutation-based genetic algorithm for the RNA folding problem: A critical look at selection strategies, crossover operators, and representation issues
-
K. C. Wiese and E. Glen, "A permutation-based genetic algorithm for the RNA folding problem: A critical look at selection strategies, crossover operators, and representation issues," BioSystems (Special Issue on Computational Intelligence in Bioinformatics), vol. 72, pp. 29-41, 2003.
-
(2003)
BioSystems (Special Issue on Computational Intelligence in Bioinformatics)
, vol.72
, pp. 29-41
-
-
Wiese, K.C.1
Glen, E.2
-
7
-
-
0028547954
-
A massively-parallel genetic algorithm for RNA secondary structure prediction
-
B. A. Shapiro and J. Navetta, "A massively-parallel genetic algorithm for RNA secondary structure prediction," J. Supercomput., vol. 8, pp. 195-207, 1994.
-
(1994)
J. Supercomput.
, vol.8
, pp. 195-207
-
-
Shapiro, B.A.1
Navetta, J.2
-
8
-
-
4344701951
-
Using stacking-energies (INN and INN - HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - A comparison to known structures
-
A. Deschênes and K. C. Wiese, "Using stacking-energies (INN and INN - HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - A comparison to known structures," in Proc. 2004 IEEE Congr. Evolutionary Computation, vol. 1, pp. 598-606.
-
Proc. 2004 IEEE Congr. Evolutionary Computation
, vol.1
, pp. 598-606
-
-
Deschênes, A.1
Wiese, K.C.2
-
10
-
-
17044379153
-
A distributed genetic algorithm for RNA secondary structure prediction
-
R. Sarker, R. Reynolds, H. Abbass, K. C. Tan, B. McKay, D. Essam, and T. Gedeon, Eds.
-
A. Hendriks, K. C. Wiese, E. Glen, and A. Deschênes, "A distributed genetic algorithm for RNA secondary structure prediction," in Proc. 2003 Congr. Evolutionary Computation (CEC 2003), R. Sarker, R. Reynolds, H. Abbass, K. C. Tan, B. McKay, D. Essam, and T. Gedeon, Eds., pp. 343-350.
-
Proc. 2003 Congr. Evolutionary Computation (CEC 2003)
, pp. 343-350
-
-
Hendriks, A.1
Wiese, K.C.2
Glen, E.3
Deschênes, A.4
-
13
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
D. H. Mathews, J. Sabina, M. Zuker, and D. H. Turner, "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure," J. Mol. Biol.,vol. 288, pp. 911-940, 1999.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
14
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
T. Xia, J. S. Jr., M. E. Burkard, R. Kierzek, S. J. Schroeder, X. Jiao, C. Cox, and D. H. Turner, "Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs," Biochemistry, vol. 37, pp. 14 719-14 735, 1998.
-
(1998)
Biochemistry
, vol.37
-
-
Xia, T.1
S. Jr., J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
15
-
-
0029100233
-
Predicting thermodynamic properties of RNA
-
M. J. Serra and D. H. Turner, "Predicting thermodynamic properties of RNA," Methods Enzymol., vol. 259, pp. 242-261, 1995.
-
(1995)
Methods Enzymol.
, vol.259
, pp. 242-261
-
-
Serra, M.J.1
Turner, D.H.2
-
16
-
-
26644475741
-
-
private communication
-
F. Major, private communication, 2003.
-
(2003)
-
-
Major, F.1
-
18
-
-
4344697111
-
The quality of pseudo-random number generators and simple genetic algorithm performance
-
T. Bäck, Ed.
-
M. M. Meysenburg and J. A. Foster, "The quality of pseudo-random number generators and simple genetic algorithm performance," in Proc. 7th Int. Conf. Genetic Algorithms, T. Bäck, Ed., 1997, pp. 276-282.
-
(1997)
Proc. 7th Int. Conf. Genetic Algorithms
, pp. 276-282
-
-
Meysenburg, M.M.1
Foster, J.A.2
-
19
-
-
32444433371
-
Randomness and GA performance, revisited
-
W. Banzhaf, J. Daida, A. E. Eiben, M. H. Garzon, V. Honavar, M. Jakiela, and R. E. Smith, Eds.
-
_, "Randomness and GA performance, revisited," in Proc. 4th Genetic and Evolutionary Computation Conf., vol. 1, W. Banzhaf, J. Daida, A. E. Eiben, M. H. Garzon, V. Honavar, M. Jakiela, and R. E. Smith, Eds., 1999, pp. 425-432.
-
(1999)
Proc. 4th Genetic and Evolutionary Computation Conf.
, vol.1
, pp. 425-432
-
-
-
20
-
-
4344605559
-
On random numbers and the performance of genetic algorithms
-
W. B. Langdon, E. Cantú-Paz, K. Mathias, R. Roy, D. Davis, R. Poli, K. Balakrishnan, V. Honavar, G. Rudolph, J. Wegener, L. Bull, M. A. Potter, A. C. Schultz, J. F. Miller, E. Burke, and N. Jonoska, Eds.
-
E. Cantú-Paz, "On random numbers and the performance of genetic algorithms," in Proc. Genetic and Evolutionary Computation Conf. (GECCO 2002), W. B. Langdon, E. Cantú-Paz, K. Mathias, R. Roy, D. Davis, R. Poli, K. Balakrishnan, V. Honavar, G. Rudolph, J. Wegener, L. Bull, M. A. Potter, A. C. Schultz, J. F. Miller, E. Burke, and N. Jonoska, Eds., pp. 311-318.
-
Proc. Genetic and Evolutionary Computation Conf. (GECCO 2002)
, pp. 311-318
-
-
Cantú-Paz, E.1
-
21
-
-
0037241015
-
Testing parallel random number generators
-
A. Srinivasan, M. Mascagni, and D. Ceperley, "Testing parallel random number generators," Parallel Comput., vol. 29, no. 1, pp. 69-94, 2003.
-
(2003)
Parallel Comput.
, vol.29
, Issue.1
, pp. 69-94
-
-
Srinivasan, A.1
Mascagni, M.2
Ceperley, D.3
-
22
-
-
3342875865
-
Parameterizing parallel multiplicative lagged-fibonacci generators
-
M. Mascagni and A. Srinivasan, "Parameterizing parallel multiplicative lagged-fibonacci generators," Parallel Comput., vol. 30, no. 5-6, pp. 899-916, 2004.
-
(2004)
Parallel Comput.
, vol.30
, Issue.5-6
, pp. 899-916
-
-
Mascagni, M.1
Srinivasan, A.2
-
25
-
-
0001848202
-
31 - 1
-
31 - 1," SIAM J . Sci. Stat. Comput., vol. 7, no. 1, pp. 24-45, 1986.
-
(1986)
SIAM J. Sci. Stat. Comput.
, vol.7
, Issue.1
, pp. 24-45
-
-
Fishman, G.A.1
Louis, I.2
Moore, R.3
-
26
-
-
0003506603
-
-
Englewood Cliffs, NJ: Prentice-Hall, General Techniques and Regular Problems
-
G. Fox, M. Johnson, G. Lyzenga, S. Otto, J. Salmon, and D. Walker, Solving Problems on Concurrent Processors. Englewood Cliffs, NJ: Prentice-Hall, 1988, vol. 1, General Techniques and Regular Problems.
-
(1988)
Solving Problems on Concurrent Processors
, vol.1
-
-
Fox, G.1
Johnson, M.2
Lyzenga, G.3
Otto, S.4
Salmon, J.5
Walker, D.6
-
28
-
-
4344665708
-
Permutation based RNA secondary structure prediction via a genetic algorithm
-
R. Sarker, R. Reynolds, H. Abbass, K. C. Tan, B. McKay, D. Essam, and T. Gedeon, Eds.
-
K. C. Wiese, A. Deschênes, and E. Glen, "Permutation based RNA secondary structure prediction via a genetic algorithm," in Proc. 2003 Congr. Evolutionary Computation (CEC 2003), R. Sarker, R. Reynolds, H. Abbass, K. C. Tan, B. McKay, D. Essam, and T. Gedeon, Eds., pp. 335-342.
-
Proc. 2003 Congr. Evolutionary Computation (CEC 2003)
, pp. 335-342
-
-
Wiese, K.C.1
Deschênes, A.2
Glen, E.3
-
31
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
J. J. Cannone, S. Subramanian, M. N. Schnare, J. R. Collett, L. M. D'Souza, Y. Du, B. Feng, N. Lin, L. V. Madabusi, K. M. Müller, N. Pande, Z. Shang, N. Yu, and R. R. Gutell, "The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs," BMC Bioinformatics, vol. 3, 2002.
-
(2002)
BMC Bioinformatics
, vol.3
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Müller, K.M.10
Pande, N.11
Shang, Z.12
Yu, N.13
Gutell, R.R.14
|