New EST trimming strategy

Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science)

Volumn 3594, Issue , 2005, Pages 206-209

  Baudet, Christian ^a,b   Dias, Zanoni ^a,b  

^a UNIVERSITY OF CAMPINAS   (Brazil)

^b SCYLLA BIOINFORMATICS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

CONTAMINATION; DECISION MAKING; PROJECT MANAGEMENT; STRATEGIC PLANNING; TARGETS; QUALITY CONTROL; VECTORS;

EST TRIMMING STRATEGY; SEQUENCE ANALYSIS; TRIMMING PROCEDURES;

NATURAL SCIENCES; TRIMMING;

EST SEQUENCING PROJECT; EST TRIMMING STRATEGY;

EID: 26444612774     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11532323_24     Document Type: Conference Paper

References (6)

1. C. Baudet and Z. Dias. New EST trimming strategy. Technical Report IC-05-09, Institute of Computing - University of Campinas, May 2005.
2. Cattle EST Project - The W. M. Keck Center for Comparative and Functional Genomics, University of Illinois at Urbana-Champaign, January 2005. http://titan.biotec.uiuc.edu/cattle/cattle_project.htm.
3. H. Chou and M. H. Hohnes. DNA sequence quality trimming and vector removal. Bioinformatics, 17:1093-1104, 2001.
4. P. Green. Phrap Homepage: phred, phrap, consed, swat, cross_match and Repeat-Masker Documentation, March 2004. http://www.phrap.org.
5. T. E. Scheetz, N. Trivedi, C. A. Roberts, T. Kucaba, B. Berger, N. L. Robinson, C. L. Birkett, A. J. Gavin, B. O'Leary, T. A. Braun, M. F. Bonaldo, H. P. Robinson, V. C. Sheffield, M. B. Soares, and T. L. Casavant. ESTprep: preprocessing cDNA sequence. Bioinformatics, 19(11):1318-1324, November 2003.
6. G. P. Telles and F. R. da Silva. Trimming and clustering sugarcane ESTs. Genetics and Molecular Biology, 24(1-4):17-23, December 2001.