Peptide de novo sequencing facilitated by a dual-labeling strategy

Analytical Chemistry

Volumn 77, Issue 19, 2005, Pages 6300-6309

  Beardsley, Richard L ^a   Sharon, Laura A ^a   Reilly, James P ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDINATION; AMIDINE LABELS; PEPTIDE SEQUENCES; PHOSPHORYLATION;

DATABASE SYSTEMS; DERIVATIVES; DISSOCIATION;

PROTEINS;

CASEIN; PEPTIDE; S METHYLPSEUDOTHIOUREA; S METHYLTHIOACETIMIDATE; S METHYLTHIOPROPIONIMIDATE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; ARTIFACT; COLLISIONALLY ACTIVATED DISSOCIATION; DERIVATIZATION; HUMAN; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PROTEIN ANALYSIS; PROTEIN PROCESSING; PROTEOMICS; SIGNAL NOISE RATIO; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; CALIBRATION; CATTLE; GUANIDINE; HUMANS; IONS; LYSINE; MOLECULAR SEQUENCE DATA; PEPTIDES; PHOSPHORYLATION; PROTEINS; TANDEM MASS SPECTROMETRY;

EID: 26444505031     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac050540k     Document Type: Article

References (44)

1. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
2. Wolters, D.; Washburn, M.; Yates, J. Anal Chem. 2001, 73, 5683-5690.
3. Hunt, D. F.; Yates, J. R.; Shabanowitz, J.; Winston, S.; Hauer, C. R. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 6233-6237.
4. Biemann, K.; Scoble, H. Science 1987, 237, 992-998.
5. Mann, M.; Hendrickson, R. C.; Pandey, A. Annu. Rev. Biochem. 2001, 70, 437-473.
6. Henzel, W.; Billeci, T.; Stults, J.; Wong, S.; Grimley, C.; Watanabe, C. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 5011-5015.
7. Pappin, D.; Hojrup, P.; Bleasby, A. Curr. Biol. 1993, 3, 327-332.
8. Yates, J.; Speicher, S.; Griffin, P.; Hunkapiller, T. Anal. Biochem. 1993, 214, 397-408.
9. James, P.; Quadroni, M.; Carafoli, E.; Gonnet, G. Protein Sci. 1994, 3, 1347-1350.
10. Mortz, E.; Vorm, O.; Mann, M.; Roepstorff, P. Biol. Mass Spectrom. 1994, 23, 249-261.
11. Eng, J. K; Mccormack, A. L.; Yates, J. R. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
12. Perkins, D. N.; Pappin, D. J. C.; Creasy, D. M.; Cottrell, J. S. Electrophoresis 1999, 20, 3551-3567.
13. Keough, T.; Youngquist, R. S.; Lacey, M. P. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 7131-7136.
14. Keough, T.; Lacey, M. P.; Fieno, A. M.; Grant, R. A.; Sun, Y. P.; Bauer, M. D.; Begley, K. B. Electrophoresis 2000, 21, 2252-2265.
15. Summerfield, S. G.; Steen, H.; O'malley, M.; Gaskell, S. J. Int. J. Mass Spectrom. 1999, 188, 95-103.
16. Van Der Rest, G.; He, F.; Emmett, M. R.; Marshall, A. G.; Gaskell, S. J. J. Am. Soc. Mass Spectrom. 2001, 12, 288-295.
17. Shevchenko, A.; Chernushevich, I.; Ens, W.; Standing, K. G.; Thomson, B.; Wilm, M.; Mann, M. Rapid Commun. Mass Spectrom. 1997, 11, 1015-1024.
18. Qin, J.; Herring, C. J.; Zhang, X. L. Rapid Commun. Mass Spectrom. 1998, 12, 209-216.
19. Uttenweiler-Joseph, S.; Neubauer, G.; Christoforidis, A.; Zerial, M.; Wilm, M. Proteomics 2001, 1, 668-682.
20. Munchbach, M.; Quadroni, M.; Miotto, G.; James, P. Anal Chem. 2000, 72, 4047-4057.
21. Goodlett, D. R.; Keller, A.; Watts, J. D.; Newitt, R.; Yi, E. C.; Purvine, S.; Eng, J. K.; Von Haller, P.; Aebersold, R.; Kolker, E. Rapid Commun. Mass Spectrom. 2001, 15, 1214-1221.
22. Gu, S.; Pan, S. Q.; Bradbury, E. M.; Chen, X. Anal. Chem. 2002, 74, 5774-5785.
23. Cagney, G.; Emili, A. Nat. Biotechnol. 2002, 20, 163-170.
24. Brancia, F. L.; Montgomery, H.; Tanaka, K.; Kumashiro, S. Anal. Chem. 2004, 76, 2748-2755.
25. Beardsley, R. L.; Karty, J. A.; Reilly, J. P. Rapid Commun. Mass Spectrom. 2000, 14, 2147-2153.
26. Brancia, F. L.; Oliver, S. G.; Gaskell, S. J. Rapid Commun. Mass Spectrom. 2000, 14, 2070-2073.
27. Hale, J. E.; Butler, J. P.; Knierman, M. D.; Becker, G. W. Anal. Biochem. 2000, 287, 110-117.
28. Beardsley, R. L.; Reilly, J. P. J. Proteome Res. 2003, 2, 15-21.
29. Beardsley, R. L.; Reilly, J. P. J. Am. Soc. Mass Spectrom. 2004, 15, 158-167.
30. Beardsley, R. L.; Reilly, J. P. Anal. Chem. 2002, 74, 1884-1890.
31. Thumm, M.; Hoenes, J.; Pfleiderer, G. Biochim. Biophys. Acta 1987, 923, 263-267.
32. Altschul, S.; Madden, T.; Schaffer, A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. Nucleic Acids Res. 1997, 25, 3389-3402.
33. Loo, J. A.; Edmonds, C. G.; Smith, R. D. Science 1990, 248, 201-204.
34. Loo, J. A.; Edmonds, C. G.; Smith, R. D. Anal. Chem. 1993, 65, 425-438.
35. Yu, W.; Vath, J. E.; Huberty, M. C.; Martin, S. A. Anal. Chem. 1993, 65, 3015-3023.
36. Vaisar, T.; Urban, J. J. Mass Spectrom. 1996, 31, 1185-1187.
37. Breci, L.; Tabb, D.; Yates, J.; Wysocki, V. Anal. Chem. 2003, 75, 1963-1971.
38. Louris, J.; Cooks, R.; Syka, J.; Kelley, P.; Stafford, G.; Todd, J. Anal. Chem. 1987, 59, 1677-1685.
39. Keil-Dlouha, V., Zylber, N., Imhoff, J. M., Tong, N. T., Keil, B. FEBS Lett. 1971, 16, 291-295.
40. Karty, J.; Ireland, M.; Brun, Y.; Reilly, J. J. Chromatogr., B 2002, 782, 363-383.
41. Brignon, G.; Ribadeaudumas, B.; Mercier, J.; Pelissier, J.; Das, B. FEBS Lett. 1977, 76, 274-279.
42. Swiss-Prot, CAS2_BOVIN, Accession No. P02663. June 14, 2005.
43. Clauser, K. R.; Baker, P.; Burlingame, A. L. Anal Chem. 1999, 71, 2871-2882.
44. Cui, W., Thompson, Matthew S., Reilly, James P. J. Am. Soc. Mass Spectrom. 2005, 16, 1384-1398 (available on-line).