Chromosomal duplications and cointegrates generated by the bacteriophage lamdba Red system in Escherichia coli K-12

BMC Molecular Biology

Volumn 5, Issue , 2005, Pages

  Poteete, Anthony R ^a   Fenton, Anita C ^a   Nadkarni, Ashwini ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DNA; RECA PROTEIN; TETRACYCLINE;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL STRAIN; BACTERIOPHAGE; CHROMOSOME DUPLICATION; ESCHERICHIA COLI K 12; GENE SEQUENCE; HOMOLOGOUS RECOMBINATION; NONHUMAN; PLASMID; POLYMERASE CHAIN REACTION; PROPHAGE;

BACTERIA (MICROORGANISMS); BACTERIOPHAGE LAMBDA; ESCHERICHIA COLI; ESCHERICHIA COLI K12;

EID: 26444466741     PISSN: 14712199     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-5-22     Document Type: Article

References (27)

1. Murphy KC: Use of bacteriophage λ recombination functions to promote gene replacement in Escherichia coli. J Bacteriol 1998, 180:2063-2071.
2. Poteete AR, Fenton AC, Murphy KC: Roles of RuvC and RecG in phage λ Red-mediated recombination. J Bacteriol 1999, 181:5402-5408.
3. Poteete AR, Fenton AC: Genetic requirements of phage λ Red-mediated gene replacement in Escherichia coli K-12. J Bacteriol 2000, 182:2336-2340.
4. Poteete AR: Modulation of DNA repair and recombination by the bacteriophage λ Orf function in Escherichia coli K-12. J Bacteriol 2004, 186:2699-2707.
5. Heitman J, Zinder ND, Model P: Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease. Proc Natl Acad Sci USA 1989, 86:2281-2285.
6. Stahl MM, Thomason L, Poteete AR, Tarkowski T, Kuzminov A, Stahl FW: Annealing vs. invasion in phage λ recombination. Genetics 1997, 147:961-977.
7. Roth JR, Benson N, Galitski T, Haack K, Lawrence JG, Miesel L: Rearrangements of the bacterial chromosome: formation and applications. In Escherichia coli and Salmonella: cellular and molecular biology Edited by: Neidhardt FC, III RC, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M and Umbarger HE. Washington, D.C., ASM Press; 1996:2256-2276.
8. Michel B, Ehrlich SD, Uzest M: DNA double-strand breaks caused by replication arrest. EMBO J 1997, 16:430-438.
9. Yu D, Ellis HM, Lee EC, Jenkins NA, Copeland NG, Court DL: An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci USA 2000, 97:5978-5983.
10. Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453-1462.
11. Kolter R, Inuzuka M, Helinski DR: Trans-complementation-dependent replication of a low molecular weight origin fragment from plasmid R6K. Cell 1978, 15:1199-1208.
12. Kolisnychenko V, III GP, Herring CD, Feher T, Posfai J, Blattner FR, Posfai G: Engineering a reduced Escherichia coli genome. Genome Res 2002, 12:640-647.
13. Myers RS, Stahl FW: Chi and the RecBCD enzyme of Escherichia coli. Annu Rev Genet 1994, 28:49-70.
14. Wang JC, Davidson N: Thermodynamic and kinetic studies on the interconversion between the linear and circular forms of phage lambda. J Mol Biol 1966, 15:111-123.
15. Stahl FW: Recombination in phage λ: one geneticist's historical perspective. Gene 1998, 223:95-102.
16. Kuzminov A: Recombinational repair of DNA damage in Escherichia coli and bacteriophage λ. Microbiol Mol Biol Rev 1999, 63:751-813.
17. Poteete AR: What makes the bacteriophage λ Red system useful for genetic engineering: molecular mechanism and biological function. FEMS Microbiology Letters 2001, 201:9-14.
18. Muyrers JPP, Zhang Y, Testa G, Stewart AF: Rapid modification of bacterial artificial chromosomes by ET-recombination. Nucl Acids Res 1999, 27:1555-1557.
19. Datsenko KA, Wanner BL: One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 2000, 97:6640-6645.
20. Stanley TL, Ellermeier CD, Slauch JM: Tissue-Specific Gene Expression Identifies a Gene in the Lysogenic Phage Gifsy-1 That Affects Salmonella enterica Serovar Typhimurium Survival in Peyer's Patches. J Bacteriol 2000, 182:4406-4413.
21. Ellis HM, Yu D, DiTizio T, Court DL: High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proc Natl Acad Sci USA 2001, 98:6742-6746.
22. Day WA, Maurelli AT: Shigella flexneri LuxS quorum-sensing system modulates virB expression but is not essential for virulence. Infect Immun 2001, 69:15-23.
23. Murphy KC, Campellone KG: Lambda Red-mediated recombinogenic engineering of enterohemorrhagic and enteropathogenic E. coli. BMC Molecular Biology 2003, 4:11.
24. Derbise A, Lesic B, Dacheux D, Ghigo JM, Carniel E: A rapid and simple method for inactivating chromosomal genes in Yersinia. FEMS Immunology and Medical Microbiology 2003, 38:113-116.
25. Murphy KC, Campellone KG, Poteete AR: PCR-mediated gene replacement in Escherichia coli. Gene 2000, 246:321-330.
26. Metcalf WM, Jiang W, Daniels LL, Kim S, Haldimann A, Wanner BL: Conditionally replicative and conjugative plasmids carrying lacZa for cloning, mutagenesis, and allele replacement in bacteria. Plasmid 1996, 35:1-13.
27. Poteete AR, Fenton AC: Efficient double-strand break-stimulated recombination promoted by the general recombination systems of phages l and P22. Genetics 1993, 134:1013-1021.