-
1
-
-
7444262496
-
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
-
The MGC Project Team. 2004. The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC). Genome Res., 14:2121-2127.
-
(2004)
Genome Res.
, vol.14
, pp. 2121-2127
-
-
-
2
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature, 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston1
-
3
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
C. Burge and S. Karlin. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268:78-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
4
-
-
0037350957
-
SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model
-
M. Alexandersson, S. Cawley, and L. Pachter. 2003. SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model. Genome Res., 13:496-502.
-
(2003)
Genome Res.
, vol.13
, pp. 496-502
-
-
Alexandersson, M.1
Cawley, S.2
Pachter, L.3
-
5
-
-
0037268583
-
Comparative gene prediction in human and mouse
-
G. Parra, P. Agarwal, J.F. Abril, T. Wiehe, J.W. Fickett, and R. Guigo. 2003. Comparative gene prediction in human and mouse. Genome Res., 13:108-117.
-
(2003)
Genome Res.
, vol.13
, pp. 108-117
-
-
Parra, G.1
Agarwal, P.2
Abril, J.F.3
Wiehe, T.4
Fickett, J.W.5
Guigo, R.6
-
6
-
-
17444437765
-
Integrating genomic homology into gene structure prediction
-
I. Korf, P. Flicek, D. Duan, and M.R. Brent. 2001. Integrating genomic homology into gene structure prediction. Bioinformatics, 17 Suppl. 1:8140-148.
-
(2001)
Bioinformatics
, vol.17
, Issue.1 SUPPL.
, pp. 8140-8148
-
-
Korf, I.1
Flicek, P.2
Duan, D.3
Brent, M.R.4
-
7
-
-
0037264654
-
Leveraging the mouse genome for gene prediction in human: From whole-genome shotgun reads to a global synteny map
-
P. Flicek, E. Keibler, P. Hu, I. Korf, and M.R. Brent. 2003. Leveraging the mouse genome for gene prediction in human: From whole-genome shotgun reads to a global synteny map. Genome Res., 13:46-54.
-
(2003)
Genome Res.
, vol.13
, pp. 46-54
-
-
Flicek, P.1
Keibler, E.2
Hu, P.3
Korf, I.4
Brent, M.R.5
-
8
-
-
8744251285
-
Gene prediction and verification in a compact genome with numerous small introns
-
in press
-
A.E. Tenney, R.H. Brown, C. Vaske, J.K. Lodge, T.L. Doering, and M.R. Brent. 2004. Gene prediction and verification in a compact genome with numerous small introns. Genome Res., in press.
-
(2004)
Genome Res.
-
-
Tenney, A.E.1
Brown, R.H.2
Vaske, C.3
Lodge, J.K.4
Doering, T.L.5
Brent, M.R.6
-
9
-
-
2442585457
-
Computational identification of evolutionary conserved exons
-
A.C. Siepel and D. Haussler. 2004. Computational identification of evolutionary conserved exons. In RECOMB 2004.
-
(2004)
RECOMB 2004
-
-
Siepel, A.C.1
Haussler, D.2
-
10
-
-
2442436168
-
Multiple-sequence functional annotation and the generalized hidden Markov phylogeny
-
Department of Statistics, University of California, Berkeley
-
J.D. McAuliffe, L. Pachter, and M.I. Jordan. 2003. Multiple-sequence functional annotation and the generalized hidden Markov phylogeny. Technical Report 647, Department of Statistics, University of California, Berkeley.
-
(2003)
Technical Report 647
-
-
McAuliffe, J.D.1
Pachter, L.2
Jordan, M.I.3
-
11
-
-
0037311782
-
Gene finding with a hidden Markov model of genome structure and evolution
-
J.S. Pedersen and J. Hein. 2003. Gene finding with a hidden Markov model of genome structure and evolution. Bioinformatics, 19:219-227.
-
(2003)
Bioinformatics
, vol.19
, pp. 219-227
-
-
Pedersen, J.S.1
Hein, J.2
-
12
-
-
1542510106
-
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
-
A. Siepel and D. Haussler. 2004. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Mol. Biol. Evol., 21:468-448.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 468-1448
-
-
Siepel, A.1
Haussler, D.2
-
13
-
-
0019797407
-
Evolutionary trees from DNA sequences
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences. J. Mol. Evol., 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
14
-
-
0032416149
-
Models of molecular evolution and phylogeny
-
P. Lió and N. Goldman. 1998. Models of molecular evolution and phylogeny. Genome Res., 8:1233-1244.
-
(1998)
Genome Res.
, vol.8
, pp. 1233-1244
-
-
Lió, P.1
Goldman, N.2
-
15
-
-
0022472187
-
Neighboring base effects on substitution rates in pseudogenes
-
M. Bulmer. 1986. Neighboring base effects on substitution rates in pseudogenes. Mol. Biol. Evol., 3:322-329.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 322-329
-
-
Bulmer, M.1
-
17
-
-
0036079158
-
The human genome browser at UCSC
-
W.J. Kent, C.W. Sugnet, T.S. Furey, K.M. Roskin, T.H. Pringle, A.M. Zahler, and D. Haussler. 2003. The human genome browser at UCSC. Genome Res., 12:996-1006.
-
(2003)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
18
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
M. Blanchette, W.J. Kent, C. Riemer, L. Elnitski, A.F.A. Smith, K.M. Roskin, R. Baertsch, K. Rosenbloom, H. Clawson, E.D. Green, D. Haussler, and W. Miller. 2004. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res., 14:708-715.
-
(2004)
Genome Res.
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smith, A.F.A.5
Roskin, K.M.6
Baertsch, R.7
Rosenbloom, K.8
Clawson, H.9
Green, E.D.10
Haussler, D.11
Miller, W.12
-
19
-
-
33645819308
-
-
SGP2 home page, (http://genome.imim.es/software/sgp2).
-
SGP2 Home Page
-
-
|