Subspace-based prototyping and classification of chromosome images

IEEE Transactions on Image Processing

Volumn 14, Issue 9, 2005, Pages 1277-1287

  Wu, Qiang ^a   Liu, Zhongmin ^a   Chen, Tiehan ^a   Xiong, Zixiang ^b   Castleman, Kenneth R ^a  

^a Advanced Digital Imaging Research LLC   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Chromosome classification; Chromosome prototyping; Discrete cosine transform (DCT); Linear discriminant analysis (LDA); Linear subspace; Principal component analysis (PCA)

Indexed keywords

CHROMOSOMES; COSINE TRANSFORMS; FEATURE EXTRACTION; PATTERN RECOGNITION; PRINCIPAL COMPONENT ANALYSIS; PROBABILITY DENSITY FUNCTION; VECTORS;

CHROMOSOME CLASSIFICATION; CHROMOSOME PROTOTYPING; DISCRETE COSINE TRANSFORM (DCT); LINEAR DISCRIMINANT ANALYSIS (LDA); LINEAR SUBSPACE;

MEDICAL IMAGING;

ALGORITHM; ARTICLE; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; CLASSIFICATION; COMPUTER ASSISTED DIAGNOSIS; EVALUATION; HUMAN; HUMAN CHROMOSOME; IMAGE ENHANCEMENT; INFORMATION RETRIEVAL; KARYOTYPING; METHODOLOGY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; ULTRASTRUCTURE;

ALGORITHMS; ARTIFICIAL INTELLIGENCE; CHROMOSOMES, HUMAN; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; INFORMATION STORAGE AND RETRIEVAL; KARYOTYPING; PATTERN RECOGNITION, AUTOMATED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 26444448410     PISSN: 10577149     EISSN: None     Source Type: Journal    
DOI: 10.1109/TIP.2005.852468     Document Type: Article

References (36)

1. ISCN: an international system for human cytogenetic nomenclature, in Cytogenetics and Cell Genetics, 1985.
2. J. Graham and J. Piper, "Automatic karyotype analysis," Meth. Mol. Biol., vol. 29, pp. 141-185, 1994.
3. G. Korthof and A. Carothers, "Tests of performance of four semi-automatic metaphase finding and karyotyping systems," Clin. Gen., vol. 40, pp. 441-451, 1991.
4. C. Lundsteen and J. Piper, Eds., Automation of Cytogenetics. New York: Springer-Verlag, 1989.
5. J. Piper, E. Granum, D. Rutovitz, and H. Ruttledge, "Automation of chromosome analysis," Signal Process., vol. 2, pp. 203-221, 1980.
6. F. Groen, T. ten Kate, A. Smeulders, and I. Young, "Human chromosome classification based on local band descriptors," Pattern Recognit. Lett., vol. 9, pp. 211-222, 1989.
7. D. A. Johnston, K. S. Tang, and S. Zimmerman, "Band features as classification measures for G-banded chromosome analysis," Comput. Biol. Med., vol. 23, pp. 115-129, 1993.
8. J. Piper and E. Granum, "On fully automatic feature measurement for banded chromosome classification," Cytometry, vol. 10, pp. 242-255, 1989.
9. A. Carothers and J. Piper, "Computer-aided classification of human chromosomes: a review," Stat. Comput., vol. 4, pp. 161-171, 1994.
10. Q. Wu and K. Castleman, "Automated chromosome classification using wavelet-based band pattern descriptors," in Proc. 13th IEEE Symp. Computer-Based Medical Systems, 2000, pp. 189-194.
11. Q. Wu, Z. Liu, Z. Xiong, Y. Wang, T. Chen, and K. R. Castleman, "On optimal subspaces for appearance-based object recognition," presented at the IEEE Int. Conf. Image Processing, Rochester, NY, 2002.
12. Z. Liu, "Classification, compression and transmission of chromosome images for genomic telemedicine," Ph.D. dissertation, Dept. Elect. Eng., Texas A&M Univ., College Station, 2002.
13. B. Lerner, H. Guterman, M. Aladjem, I. Dinstein, and Y. Romem, "On pattern classification with Sammon's nonlinear mapping - an experimental study," Pattern Recognit., vol. 31, no. 4, pp. 371-381, 1998.
14. B. Lerner, "Toward a completely automatic neural network based human chromosome analysis," IEEE Trans. Syst., Man, Cybern B, Cybern., vol. 28, no. 4, pp. 544-552, Aug. 1998.
15. B. Lerner, H. Guterman, M. Aladjem, and I. Dinstein, "A comparative study of neural network based feature extraction paradigms," Pattern Recognit. Lett., vol. 20, no. 1, pp. 7-14, 1999.
16. G. Ritter and K. Gaggermeier, "Automatic classification of chromosomes by means of quadratically asymmetric statistical distribution," Pattern Recognit., vol. 32, pp. 997-1008, 1999.
17. G. Agam and I. Dinstein, "Geometric separation of partially overlapping nonrigid objects applied to automatic chromosome classification," IEEE Trans. Pattern Anal. Mach. Intell., vol. 19, no. 11, Nov. 1997.
18. J. M. Conroy, T. G. Kolda, D. P. O'Leary, and T. J. O'Leary, "Chromosome identification using hidden Markov models: comparison with neural networks, singular value decomposition, princepal component analysis, and fisher discriminent analysis," Lab. Investigation, vol. 80, no. 11, pp. 1629-1641, 2000.
19. L. Sirovich and M. Kirby, "Low-dimensional procedure for the characterization of human faces," J. Opt. Soc. Amer, vol. 4, pp. 519-524, 1987.
20. M. Kirby and L. Sirovich, "Application of the Karhunen-Loeve procedure for the characterization of human faces," IEEE Trans. Pattern Anal. Mach. Intell., vol. 12, no. 1, pp. 103-108, Jan. 1990.
21. M. Turk and A. Pentland, "Eigenfaces for recognition," J. Cogn. Neurosci., vol. 3, pp. 71-86, 1994.
22. P. Belhumeur, J. Hespanha, and D. Kriegman, "Eigenfaces vs. fisher-faces: recognition using class specific linear projection," IEEE Trans. Pattern Anal. Mach. Intell., vol. 19, no. 7, pp. 711-720, Jul. 1997.
23. K. Etemad and R. Chellappa, "Discriminant analysis for recognition of human face images," J. Opt. Soc. Amer., vol. 14, pp. 1726-1733, Aug. 1997.
24. W. Zhao, A. Krishnaswamy, R. Chellappa, D. L. Swets, and J. Weng, "Discriminant analysis of principal components for face recognition," in Face Recognition: From Theory to Applications, H. Wechsler, P. J. Phillips, V. Bruce, and T. Huang, Eds. New York: Springer-Verlag, 1998.
25. A. Martinez and A. Kak, "PCA versus LDA," IEEE Trans. Pattern Anal. Mach. Intell., vol. 23, no. 2, pp. 228-233, Feb. 2001.
26. D. Swets and J. Weng, "Using discriminant eigenfeatures for image retrieval," IEEE Trans. Pattern Anal. Mach. Intell., vol. 18, no. 8, pp. 831-836, Aug. 1996.
27. J. Weng, "Crescepton and SHOSLIF: toward comprehensive visual learning," in Early Visual Learning, S. Nayar and T. Poggio, Eds. Oxford, U.K.: Oxford Univ. Press, 1996, pp. 183-214.
28. K. R. Rao and P. Yip, Discrete Cosine Transform: Algorithms, Advantages, Applications. New York: Acadamic, 1990.
29. R. Duda, P. Hart, and D. Stork, Pattern Classification. New York: Wiley, 2001.
30. R. Fisher, "The statistical utilization of multiple measurements," Ann. Eugen., vol. 8, pp. 376-386, 1938.
31. MacKtype: A software product of applied imaging corporation, 2000.
32. J. Piper, "Variability and bias in experimentally measured classifier error rates," Pattern Recognit. Lett., vol. 13, pp. 685-692, 1992.
33. G. Toussaint, "Bibliography on estimation of misclassification," IEEE Trans. Inf. Theory, vol. 20, no. 4, pp. 472-479, Apr. 1974.
34. E. Granum, "Pattern recognition aspect of chromosome analysis: Computerized and visual interpretation of banded human chromosomes," Ph.D. dissertation, Electron Lab., Tech. Univ. Denmark, Lyngby, 1980.
35. K. Castleman, Digital Image Processing. Upper Saddle River, NJ: Prentice-Hall, 1996.
36. C. Lundsteen and E. Granum, "Visual classification of banded human chromosomes II: classification and karyotyping of integrated density profiles," Ann. Human Genet., vol. 40, pp. 431-442, 1977.