메뉴 건너뛰기




Volumn 58, Issue 5, 1998, Pages 502-509

Genetically structured mathematical modeling of trp attenuator mechanism

Author keywords

Cloned gene expression control; Genetically structured mathematical model; Trp operon

Indexed keywords

AMINO ACIDS; CLONING; COMPUTER SIMULATION; MATHEMATICAL MODELS; PROTEINS;

EID: 2642704240     PISSN: 00063592     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0290(19980605)58:5<502::AID-BIT6>3.0.CO;2-H     Document Type: Article
Times cited : (14)

References (28)
  • 1
    • 0017077046 scopus 로고
    • Regulation of transcription termination in the leader region of the tryptophan operon of E. coli involves tryptophan or its metabolic product
    • Bertrand, K., Yanofsky, C. 1976. Regulation of transcription termination in the leader region of the tryptophan operon of E. coli involves tryptophan or its metabolic product. J. Mol. Biol. 103: 339-349.
    • (1976) J. Mol. Biol. , vol.103 , pp. 339-349
    • Bertrand, K.1    Yanofsky, C.2
  • 2
    • 0023748145 scopus 로고
    • Use of tRNA suppressors to probe regulation of E. coli release factor 2
    • Curran, J. F., Yarus, M. 1988. Use of tRNA suppressors to probe regulation of E. coli release factor 2. J. Mol. Biol. 203: 75-83.
    • (1988) J. Mol. Biol. , vol.203 , pp. 75-83
    • Curran, J.F.1    Yarus, M.2
  • 3
    • 2642709140 scopus 로고
    • Trp and leader RNA secondary structure in attenuation of the trp operon
    • D. Soll, P. Schimmel, J. Abelson (ed.). Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
    • Trp and leader RNA secondary structure in attenuation of the trp operon, p. 469-479. In: D. Soll, P. Schimmel, J. Abelson (ed.), Transfer RNA: Biological aspects. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
    • (1980) Transfer RNA: Biological Aspects , pp. 469-479
    • Elsenberg, S.P.1    Soil, L.2    Yarus, M.3
  • 4
    • 0015527714 scopus 로고
    • Efficiency of protein and mRNA synthesis in bacteriophage T4-infected cells of
    • Gausing, K. 1972. Efficiency of protein and mRNA synthesis in bacteriophage T4-infected cells of E. coli. J. Mol. Biol. 71: 529-545.
    • (1972) E. Coli. J. Mol. Biol. , vol.71 , pp. 529-545
    • Gausing, K.1
  • 6
    • 0019412155 scopus 로고
    • Pausing and termination of transcription within the early region of bacteriophage T7
    • Kassavetis, G. A., Chamberlin, M. J. 1981. Pausing and termination of transcription within the early region of bacteriophage T7. J. Biol. Chem. 256: 2777-2786.
    • (1981) J. Biol. Chem. , vol.256 , pp. 2777-2786
    • Kassavetis, G.A.1    Chamberlin, M.J.2
  • 7
    • 5444226623 scopus 로고
    • On-off regulation of the tryptophan promoter in fed-batch culture
    • Kawai, S., Mizutani, S., Iijima, S., Kobayashi, T. 1986. On-off regulation of the tryptophan promoter in fed-batch culture. J. Ferment. Technol. 64: 503-510.
    • (1986) J. Ferment. Technol. , vol.64 , pp. 503-510
    • Kawai, S.1    Mizutani, S.2    Iijima, S.3    Kobayashi, T.4
  • 8
    • 0027572108 scopus 로고
    • A simple genetically structured model of trp represser-operator interactions
    • Koh, B. T., Yap, M. G. S. 1993. A simple genetically structured model of trp represser-operator interactions. Biotechnol. Bioeng. 41: 707-714.
    • (1993) Biotechnol. Bioeng. , vol.41 , pp. 707-714
    • Koh, B.T.1    Yap, M.G.S.2
  • 9
    • 0021217722 scopus 로고
    • Stability of an RNA secondary structure affects in-vitro transcription pausing in the trp operon leader region
    • Landick, R., Yanofsky, C. 1984. Stability of an RNA secondary structure affects in-vitro transcription pausing in the trp operon leader region. J. Biol. Chem. 259: 11550-11555.
    • (1984) J. Biol. Chem. , vol.259 , pp. 11550-11555
    • Landick, R.1    Yanofsky, C.2
  • 10
    • 0022392670 scopus 로고
    • Translation activates the paused transcription complex and restores transcription of the trp operon leader region
    • Landick, R., Carey, J., Yanofsky, C. 1985. Translation activates the paused transcription complex and restores transcription of the trp operon leader region. Proc. Natl. Acad. Sci. USA 82: 4663-4667.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 4663-4667
    • Landick, R.1    Carey, J.2    Yanofsky, C.3
  • 12
    • 0017653033 scopus 로고
    • Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination
    • Lee, F., Yanofsky, C. 1977. Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination. Proc. Natl. Acad. Sci. USA 74: 4365-4369.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 4365-4369
    • Lee, F.1    Yanofsky, C.2
  • 13
    • 0024017382 scopus 로고
    • Performance of recombinant fermentation and evaluation of gene expression efficiency for gene product in a two-stage continuous culture system
    • Lee, S. B., Ryu, D. D. Y., Siegel, R., Park, S. H. 1988. Performance of recombinant fermentation and evaluation of gene expression efficiency for gene product in a two-stage continuous culture system. Biotechnol. Bioeng. 31: 805-820.
    • (1988) Biotechnol. Bioeng. , vol.31 , pp. 805-820
    • Lee, S.B.1    Ryu, D.D.Y.2    Siegel, R.3    Park, S.H.4
  • 14
    • 0023007657 scopus 로고
    • Production of active human interferon-b in E. coli. I: Preferential production by lower culture temperature
    • Mizukami, T., Komatsu, Y., Hosoi, N. 1986. Production of active human interferon-b in E. coli. I: Preferential production by lower culture temperature. Biotechnol. Lett. 8: 605-610.
    • (1986) Biotechnol. Lett. , vol.8 , pp. 605-610
    • Mizukami, T.1    Komatsu, Y.2    Hosoi, N.3
  • 15
    • 0017357987 scopus 로고
    • Chemical measurement of steady-state levels of ten aminoacryl-transfer ribonucleic acid synthetases in Escherichia coli
    • Neidhardt, F. C., Bloch, P. L., Pedersen, S., Reeh, S. 1977. Chemical measurement of steady-state levels of ten aminoacryl-transfer ribonucleic acid synthetases in Escherichia coli. J. Bacteriol. 129: 378-387.
    • (1977) J. Bacteriol. , vol.129 , pp. 378-387
    • Neidhardt, F.C.1    Bloch, P.L.2    Pedersen, S.3    Reeh, S.4
  • 16
    • 0018604501 scopus 로고
    • Attenuation in the E. coli tryptophan operon: Role of RNA secondary structure involving the tryptophan codon region
    • Oxender, D. L., Zurawski, G., Yanofsky, C. 1979. Attenuation in the E. coli tryptophan operon: Role of RNA secondary structure involving the tryptophan codon region. Proc. Natl. Acad. Sci. USA. 76: 5524-5528.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 5524-5528
    • Oxender, D.L.1    Zurawski, G.2    Yanofsky, C.3
  • 17
    • 0023752568 scopus 로고
    • Ribosome release modulates basal level expression of the trp operon of E. coli
    • Roesser, J. R., Yanofsky, C. 1988. Ribosome release modulates basal level expression of the trp operon of E. coli. J. Biol. Chem. 263: 14251-14255.
    • (1988) J. Biol. Chem. , vol.263 , pp. 14251-14255
    • Roesser, J.R.1    Yanofsky, C.2
  • 18
    • 0024322057 scopus 로고
    • Regulation of basal level expression of the tryptophan operon of E. coli
    • Roesser, J. R., Nakamura, Y., Yanofsky, C. 1989. Regulation of basal level expression of the tryptophan operon of E. coli. J. Biol. Chem. 264: 12284-12288.
    • (1989) J. Biol. Chem. , vol.264 , pp. 12284-12288
    • Roesser, J.R.1    Nakamura, Y.2    Yanofsky, C.3
  • 19
    • 0026571675 scopus 로고
    • Improvement of recombinant gene expression in E. coli for glucose-controlled continuous and fed-batch cultures
    • Schroeckh, V., Harmann, M., Hircschfeld, E. B., Riesenberg, D. 1992. Improvement of recombinant gene expression in E. coli for glucose-controlled continuous and fed-batch cultures. Appl. Microbiol. Biotechnol. 36: 487-492.
    • (1992) Appl. Microbiol. Biotechnol. , vol.36 , pp. 487-492
    • Schroeckh, V.1    Harmann, M.2    Hircschfeld, E.B.3    Riesenberg, D.4
  • 20
    • 0024604728 scopus 로고
    • Bacterial expression, facile purification and properties of recombinant human lymphotoxin (tumor necrosis factor-b)
    • Seow, H. F., Goh, C. R., Krishnan, L., Porter, A. G. 1989. Bacterial expression, facile purification and properties of recombinant human lymphotoxin (tumor necrosis factor-b). Bio/technology 7: 363-368.
    • (1989) Bio/technology , vol.7 , pp. 363-368
    • Seow, H.F.1    Goh, C.R.2    Krishnan, L.3    Porter, A.G.4
  • 21
    • 0021913325 scopus 로고
    • Kinetic study of instability of recombinant plasmid pPLc23trpA1 in E. coli using a two-state continuous culture system
    • Siegel, R., Ryu, D. D. Y. 1985. Kinetic study of instability of recombinant plasmid pPLc23trpA1 in E. coli using a two-state continuous culture system. Biotechnol. Bioeng. 27: 28-33.
    • (1985) Biotechnol. Bioeng. , vol.27 , pp. 28-33
    • Siegel, R.1    Ryu, D.D.Y.2
  • 22
    • 0020616239 scopus 로고
    • Expression plasmid vectors containing E. coli tryptophan promoter transcriptional units lacking the attenuator
    • Tacon, W. C. A., Bonass, W. A., Jenkins, B., Emtage, J. S. 1983. Expression plasmid vectors containing E. coli tryptophan promoter transcriptional units lacking the attenuator. Gene 23: 255-265.
    • (1983) Gene , vol.23 , pp. 255-265
    • Tacon, W.C.A.1    Bonass, W.A.2    Jenkins, B.3    Emtage, J.S.4
  • 23
    • 0019886894 scopus 로고
    • Pausing of RNA polymerase during in vitro transcription of the tryptophan operon leader region
    • Winkler, M. E., Yanofsky, C. 1981. Pausing of RNA polymerase during in vitro transcription of the tryptophan operon leader region. Biochemistry 20: 3738-3744.
    • (1981) Biochemistry , vol.20 , pp. 3738-3744
    • Winkler, M.E.1    Yanofsky, C.2
  • 25
    • 0021223661 scopus 로고
    • Repression is relieved by attenuation in trp operon of E. coli as tryptophan starvation becomes increasingly severe
    • Yanofsky, C., Kelly, R. L., Horn, V. 1984. Repression is relieved by attenuation in trp operon of E. coli as tryptophan starvation becomes increasingly severe. J. Bacteriol. 158: 1018-1024.
    • (1984) J. Bacteriol. , vol.158 , pp. 1018-1024
    • Yanofsky, C.1    Kelly, R.L.2    Horn, V.3
  • 27
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M., Stieger, P. 1981. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9: 133-148.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stieger, P.2
  • 28
    • 0018249690 scopus 로고
    • Translational control of transcription termination at the attenuator of the E. coli tryptophan operon
    • Zurawski, G., Elseviers, D., Stauffer, G., Yanofsky, C. 1978. Translational control of transcription termination at the attenuator of the E. coli tryptophan operon. Proc. Natl. Acad. Sci. USA 75: 5988-5992.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 5988-5992
    • Zurawski, G.1    Elseviers, D.2    Stauffer, G.3    Yanofsky, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.