-
1
-
-
0020122366
-
Amino acid distribution in protein secondary structures
-
Argos P, Palau J. 1982. Amino acid distribution in protein secondary structures. Int J Pept Protein Res 19:380-393.
-
(1982)
Int J Pept Protein Res
, vol.19
, pp. 380-393
-
-
Argos, P.1
Palau, J.2
-
2
-
-
0017411710
-
The protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein F, Koetxle T, Williams G, Meyer E, Brice M, Rodgers J, Kennard O, Shimannouchi T, Tasumi M. 1977. The protein Data Bank: A computer-based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.1
Koetxle, T.2
Williams, G.3
Meyer, E.4
Brice, M.5
Rodgers, J.6
Kennard, O.7
Shimannouchi, T.8
Tasumi, M.9
-
4
-
-
0027367977
-
Helix capping propensities in peptides parallel those in proteins
-
Chakrabartty A, Doig AJ, Baldwin RL. 1993. Helix capping propensities in peptides parallel those in proteins. Proc Natl Acad Sci USA 90:11332-11336.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11332-11336
-
-
Chakrabartty, A.1
Doig, A.J.2
Baldwin, R.L.3
-
5
-
-
0003128793
-
Prediction of protein structural classes from amino acid composition
-
Fasman GD, ed. New York: Plenum Press
-
Chou PY. 1989. Prediction of protein structural classes from amino acid composition. In: Fasman GD, ed. Prediction of protein structure and the principles of protein conformation. New York: Plenum Press. pp 549-586.
-
(1989)
Prediction of Protein Structure and the Principles of Protein Conformation
, pp. 549-586
-
-
Chou, P.Y.1
-
6
-
-
0015987426
-
Prediction of protein conformation
-
Chou PY, Fasman GD. 1974. Prediction of protein conformation. Biochemistry 13:222-245.
-
(1974)
Biochemistry
, vol.13
, pp. 222-245
-
-
Chou, P.Y.1
Fasman, G.D.2
-
7
-
-
0000499414
-
Prediction of secondary structure of proteins by means of hydrophobicity profiles
-
Cid H, Burster M, Arriagada E, Campos M. 1982. Prediction of secondary structure of proteins by means of hydrophobicity profiles. FEBS Lett 150:247-254.
-
(1982)
FEBS Lett
, vol.150
, pp. 247-254
-
-
Cid, H.1
Burster, M.2
Arriagada, E.3
Campos, M.4
-
8
-
-
0029077857
-
Interaction between hydrophobic side chains within α-helices
-
Creamer TP, Rose GD. 1995. Interaction between hydrophobic side chains within α-helices. Protein Sci 4:1305-1314.
-
(1995)
Protein Sci
, vol.4
, pp. 1305-1314
-
-
Creamer, T.P.1
Rose, G.D.2
-
9
-
-
0029020484
-
N- and C-capping preferences for all 20 amino acids in α-helical peptides
-
Doig AJ, Baldwin RL. 1995. N-and C-capping preferences for all 20 amino acids in α-helical peptides. Protein Sci 4:1325-1336.
-
(1995)
Protein Sci
, vol.4
, pp. 1325-1336
-
-
Doig, A.J.1
Baldwin, R.L.2
-
10
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar S, Schiffer JM, Xiong HY, Babik JM, Hecht MH. 1993. Protein design by binary patterning of polar and nonpolar amino acids. Science 262:1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.Y.3
Babik, J.M.4
Hecht, M.H.5
-
11
-
-
0031022743
-
Improvement of protein secondary structure prediction using binary word encoding
-
Kawabata T, Doi J. 1997. Improvement of protein secondary structure prediction using binary word encoding. Proteins 27:36-46.
-
(1997)
Proteins
, vol.27
, pp. 36-46
-
-
Kawabata, T.1
Doi, J.2
-
12
-
-
0016209912
-
Structural principles of the globular organization of protein chains. A stereochemical theory of globular protein secondary structure
-
Lim VI. 1974a. Structural principles of the globular organization of protein chains. A stereochemical theory of globular protein secondary structure. J Mol Biol 88:857-872.
-
(1974)
J Mol Biol
, vol.88
, pp. 857-872
-
-
Lim, V.I.1
-
13
-
-
0016162558
-
Algorithms for prediction of α-helical and β-structural regions in globular proteins
-
Lim VI. 1974b. Algorithms for prediction of α-helical and β-structural regions in globular proteins. J Mol Biol 88:873-894.
-
(1974)
J Mol Biol
, vol.88
, pp. 873-894
-
-
Lim, V.I.1
-
14
-
-
84984084269
-
The stabilization of the α-helix in aqueous solutions by hydrophobic side chain interaction
-
Lotan N, Yaron A, Berger A. 1966. The stabilization of the α-helix in aqueous solutions by hydrophobic side chain interaction. Biopolymers 4:365-368.
-
(1966)
Biopolymers
, vol.4
, pp. 365-368
-
-
Lotan, N.1
Yaron, A.2
Berger, A.3
-
15
-
-
0028447768
-
Elucidating the folding problem of helical peptides using empirical parametres
-
Muñoz V, Serrano L. 1994. Elucidating the folding problem of helical peptides using empirical parametres. Nat Struct Biol 1:399-409.
-
(1994)
Nat Struct Biol
, vol.1
, pp. 399-409
-
-
Muñoz, V.1
Serrano, L.2
-
16
-
-
0027968834
-
Helix-stabilizing interaction between tyrosine and leucine or valine when the spacing is i, i + 4
-
Padmanabhan S, Baldwin RL. 1994a. Helix-stabilizing interaction between tyrosine and leucine or valine when the spacing is i, i + 4. J Mol Biol 241: 706-713.
-
(1994)
J Mol Biol
, vol.241
, pp. 706-713
-
-
Padmanabhan, S.1
Baldwin, R.L.2
-
17
-
-
0028569692
-
Tests for helix-stabilizing interactions between various nonpolar side chains in alanine-based peptides
-
Padmanabhan S, Baldwin RL. 1994b. Tests for helix-stabilizing interactions between various nonpolar side chains in alanine-based peptides. Protein Sci 3:1992-1997.
-
(1994)
Protein Sci
, vol.3
, pp. 1992-1997
-
-
Padmanabhan, S.1
Baldwin, R.L.2
-
18
-
-
0020122457
-
Protein secondary structure. Studies on the limits of prediction accuracy
-
Palau J, Argos P, Puigdomenech P. 1982. Protein secondary structure. Studies on the limits of prediction accuracy. Int J Pept Protein Res 19:394-401.
-
(1982)
Int J Pept Protein Res
, vol.19
, pp. 394-401
-
-
Palau, J.1
Argos, P.2
Puigdomenech, P.3
-
19
-
-
0016286856
-
The structural code for proteins: Zonal distribution of amino acid residues and stabilization of helices by hydrophobic triplets
-
Palau J, Puigdomenech P. 1974. The structural code for proteins: Zonal distribution of amino acid residues and stabilization of helices by hydrophobic triplets. J Mol Biol 88:457-469.
-
(1974)
J Mol Biol
, vol.88
, pp. 457-469
-
-
Palau, J.1
Puigdomenech, P.2
-
20
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of alpha helices
-
Richardson JS, Richardson DC. 1988. Amino acid preferences for specific locations at the ends of alpha helices. Science 240:1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
21
-
-
0027471550
-
Electrostatic stabilization in four-helix bundle proteins
-
Robinson CR, Sligar SG. 1993. Electrostatic stabilization in four-helix bundle proteins. Protein Sci 2:826-837.
-
(1993)
Protein Sci
, vol.2
, pp. 826-837
-
-
Robinson, C.R.1
Sligar, S.G.2
-
22
-
-
0003572889
-
-
Glaxo Research & Development; ros@dcs.ed. ac.uk
-
Sayle R. 1996. RasMol vs. 2.6. Glaxo Research & Development; ros@dcs.ed. ac.uk.
-
(1996)
RasMol Vs. 2.6
-
-
Sayle, R.1
-
23
-
-
0014062165
-
Use of helical wheels to represent the structures of proteins and to identify segments with helical potential
-
Schiffer M, Edmundson AB. 1967. Use of helical wheels to represent the structures of proteins and to identify segments with helical potential. Biophys J 7:121-135.
-
(1967)
Biophys J
, vol.7
, pp. 121-135
-
-
Schiffer, M.1
Edmundson, A.B.2
-
25
-
-
0025949203
-
Highly restricted distributions of hydrophobic and charged amino acids in longitudinal quadrants of alpha-helices
-
Torgerson RR, Lew RA, Reyes VE, Hardy L, Humphreys RE. 1991. Highly restricted distributions of hydrophobic and charged amino acids in longitudinal quadrants of alpha-helices. J Biol Chem 266:5521-5524.
-
(1991)
J Biol Chem
, vol.266
, pp. 5521-5524
-
-
Torgerson, R.R.1
Lew, R.A.2
Reyes, V.E.3
Hardy, L.4
Humphreys, R.E.5
-
26
-
-
0027242343
-
Prediction of alpha-helices in proteins with the hydrophobic strip-of-helix template and distributions of other amino acids around the hydrophobic strip
-
Vazquez SR, Kuo DZ, Salomon M, Hardy L, Lew RA, Humphreys RE. 1993a. Prediction of alpha-helices in proteins with the hydrophobic strip-of-helix template and distributions of other amino acids around the hydrophobic strip. Arch Biochem Biophys 305:448-453.
-
(1993)
Arch Biochem Biophys
, vol.305
, pp. 448-453
-
-
Vazquez, S.R.1
Kuo, D.Z.2
Salomon, M.3
Hardy, L.4
Lew, R.A.5
Humphreys, R.E.6
-
27
-
-
0027484480
-
Favored and suppressed patterns of hydrophobic and nonhydrophobic amino acids in proteins sequences
-
Vazquez S, Thomas C, Lew RA, Humphreys RE. 1993b. Favored and suppressed patterns of hydrophobic and nonhydrophobic amino acids in proteins sequences. Proc Natl Acad Sci USA 90:9100-9104.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 9100-9104
-
-
Vazquez, S.1
Thomas, C.2
Lew, R.A.3
Humphreys, R.E.4
-
28
-
-
0028846974
-
Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins
-
West MW, Hecht MH. 1995. Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins. Protein Sci 4:2032-2039.
-
(1995)
Protein Sci
, vol.4
, pp. 2032-2039
-
-
West, M.W.1
Hecht, M.H.2
-
29
-
-
0030056997
-
A canonical structure for the ligand-binding domain of nuclear receptors
-
Wurtz JM, Bourguet W, Renaud JP, Vivat V, Chambon P, Moras D, Gronemeyer H. 1996. A canonical structure for the ligand-binding domain of nuclear receptors. Nat Struct Biol 3:87-94.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 87-94
-
-
Wurtz, J.M.1
Bourguet, W.2
Renaud, J.P.3
Vivat, V.4
Chambon, P.5
Moras, D.6
Gronemeyer, H.7
-
30
-
-
0029064713
-
Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides
-
Xiong HY, Buckwalter BL, Shieh HM, Hecht HM. 1995. Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides. Proc Natl Acad Sci USA 92:6349-6353.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 6349-6353
-
-
Xiong, H.Y.1
Buckwalter, B.L.2
Shieh, H.M.3
Hecht, H.M.4
-
31
-
-
0030581145
-
The use of amino acid patterns of classified helices and strands in secondary structure prediction
-
Zhu ZY, Blundell TL. 1996. The use of amino acid patterns of classified helices and strands in secondary structure prediction. J Mol Biol 260:261-276.
-
(1996)
J Mol Biol
, vol.260
, pp. 261-276
-
-
Zhu, Z.Y.1
Blundell, T.L.2
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