메뉴 건너뛰기




Volumn 55, Issue 4, 2004, Pages 924-931

Dynamics and energetics of water permeation through the aquaporin channel

Author keywords

Aquaporins; Free energy calculation; Jarzynski identity; Molecular dynamics; Water permeation

Indexed keywords

AQUAPORIN; AQUAPORIN 1; ASPARAGINYLPROLYLALANINE; UNCLASSIFIED DRUG;

EID: 2642569344     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10642     Document Type: Article
Times cited : (43)

References (43)
  • 2
    • 0034075677 scopus 로고    scopus 로고
    • cAMP regulated membrane diffusion of a green fluorescent protein-aquaporin 2 chimera
    • Umenishi F, Verbavatz JM, Verkman AS. cAMP regulated membrane diffusion of a green fluorescent protein-aquaporin 2 chimera. Biophys J 2000;78:1024-1035.
    • (2000) Biophys J , vol.78 , pp. 1024-1035
    • Umenishi, F.1    Verbavatz, J.M.2    Verkman, A.S.3
  • 3
    • 0030997806 scopus 로고    scopus 로고
    • Secondary structures comparison of aquaporin-1 and bacteriorhodopsin: A Fourier transform infrared spectroscopy study of two-dimensional membrane crystals
    • Cabiaux V, Oberg KA, Pancoska P, Walz T, Agre P, Engel A. Secondary structures comparison of aquaporin-1 and bacteriorhodopsin: a Fourier transform infrared spectroscopy study of two-dimensional membrane crystals. Biophys J 1997;73:406-417.
    • (1997) Biophys J , vol.73 , pp. 406-417
    • Cabiaux, V.1    Oberg, K.A.2    Pancoska, P.3    Walz, T.4    Agre, P.5    Engel, A.6
  • 4
    • 0032853219 scopus 로고    scopus 로고
    • Cellular and molecular biology of the aquaporin water channels
    • Borgnia M, Nielsen S, Engel A, Agre P. Cellular and molecular biology of the aquaporin water channels. Annu Rev Biochem 1999;68:425-458.
    • (1999) Annu Rev Biochem , vol.68 , pp. 425-458
    • Borgnia, M.1    Nielsen, S.2    Engel, A.3    Agre, P.4
  • 5
    • 0026806764 scopus 로고
    • Reconstitution of functional water channels in liposomes containing purified red cell CHIP28 protein
    • Zeidel ML, Ambudkar SV, Smith BL, Agre P. Reconstitution of functional water channels in liposomes containing purified red cell CHIP28 protein. Biochemistry 1992;31:7436-7440.
    • (1992) Biochemistry , vol.31 , pp. 7436-7440
    • Zeidel, M.L.1    Ambudkar, S.V.2    Smith, B.L.3    Agre, P.4
  • 6
    • 0028314729 scopus 로고
    • Ultrastructure, pharmacologic inhibition, and transport selectivity of aquaporin channel-forming integral protein in proteoliposomes
    • Zeidel ML, Nielsen S, Smith BL, Ambudkar SV, Maunsbach AB, Agre P. Ultrastructure, pharmacologic inhibition, and transport selectivity of aquaporin channel-forming integral protein in proteoliposomes. Biochemistry 1994;33:1606-1615.
    • (1994) Biochemistry , vol.33 , pp. 1606-1615
    • Zeidel, M.L.1    Nielsen, S.2    Smith, B.L.3    Ambudkar, S.V.4    Maunsbach, A.B.5    Agre, P.6
  • 7
    • 0035943688 scopus 로고    scopus 로고
    • Water and ion permeation of aquaporin-1 in planar lipid bilayers: Major differences in structural determinants and stoichiometry
    • Saparov SM, Kozono D, Rothe U, Agre P, Pohl P. Water and ion permeation of aquaporin-1 in planar lipid bilayers: major differences in structural determinants and stoichiometry. J Biol Chem 2001;276:31515-31520.
    • (2001) J Biol Chem , vol.276 , pp. 31515-31520
    • Saparov, S.M.1    Kozono, D.2    Rothe, U.3    Agre, P.4    Pohl, P.5
  • 9
    • 0035852730 scopus 로고    scopus 로고
    • Visualization of a water-selective pore by electron crystallography in vitreous ice
    • Ren G, Reddy VS, Cheng A, Melnyk P, Mitra AK. Visualization of a water-selective pore by electron crystallography in vitreous ice. Proc Natl Acad Sci USA 2001;98:1398-1403.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1398-1403
    • Ren, G.1    Reddy, V.S.2    Cheng, A.3    Melnyk, P.4    Mitra, A.K.5
  • 11
    • 0035924329 scopus 로고    scopus 로고
    • Structural basis of water-specific transport through the AQP1 water channel
    • Sui H, Han BG, Lee JK, Walian P, Jap BK. Structural basis of water-specific transport through the AQP1 water channel. Nature 2001;414:872-878.
    • (2001) Nature , vol.414 , pp. 872-878
    • Sui, H.1    Han, B.G.2    Lee, J.K.3    Walian, P.4    Jap, B.K.5
  • 12
    • 0037227425 scopus 로고    scopus 로고
    • The structure of the aquaporin-1 water channel: A comparison between cryo-electron microscopy and X-ray crystallography
    • de Groot BL, Engel A, Grubmüller H. The structure of the aquaporin-1 water channel: a comparison between cryo-electron microscopy and X-ray crystallography. J Mol Biol 2003;325:485-493.
    • (2003) J Mol Biol , vol.325 , pp. 485-493
    • De Groot, B.L.1    Engel, A.2    Grubmüller, H.3
  • 13
    • 0035861454 scopus 로고    scopus 로고
    • Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GlpF
    • de Groot BL, Grubmüller H. Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF. Science 2001;294:2353-2357.
    • (2001) Science , vol.294 , pp. 2353-2357
    • De Groot, B.L.1    Grubmüller, H.2
  • 16
    • 0028365632 scopus 로고
    • Functional independence of monomeric CHIP28 water channels revealed by expression of wild-type mutant heterodimers
    • Shi LB, Skach WR, Verkman AS. Functional independence of monomeric CHIP28 water channels revealed by expression of wild-type mutant heterodimers. J Biol Chem 1994;269:10417-10422.
    • (1994) J Biol Chem , vol.269 , pp. 10417-10422
    • Shi, L.B.1    Skach, W.R.2    Verkman, A.S.3
  • 17
  • 18
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: A package for molecular simulation and trajectory analysis
    • Lindahl E, Hess B, Van der Spoel D. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Mod 2001;7:306-317.
    • (2001) J Mol Mod , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Van Der Spoel, D.3
  • 20
    • 0033446707 scopus 로고    scopus 로고
    • Aquaporins: Phylogeny, structure, and physiology of water channels
    • Heymann JB, Engel A. Aquaporins: phylogeny, structure, and physiology of water channels. News Physiol Sci 1999;14:187-193.
    • (1999) News Physiol Sci , vol.14 , pp. 187-193
    • Heymann, J.B.1    Engel, A.2
  • 23
    • 0033529269 scopus 로고    scopus 로고
    • Potassium and sodium binding to the outer mouth of the K+ channel
    • Guidoni L, Torre V, Carloni P. Potassium and sodium binding to the outer mouth of the K+ channel. Biochemistry 1999;38:8599-8604.
    • (1999) Biochemistry , vol.38 , pp. 8599-8604
    • Guidoni, L.1    Torre, V.2    Carloni, P.3
  • 25
    • 0000795938 scopus 로고
    • Free energies of hydration and pure liquid properties of hydrocarbons from the OPLS all-atom model
    • Kaminski G, Duffy EM, Matsui T, Jorgensen WL. Free energies of hydration and pure liquid properties of hydrocarbons from the OPLS all-atom model. J Phys Chem 1994;98:13077-13082.
    • (1994) J Phys Chem , vol.98 , pp. 13077-13082
    • Kaminski, G.1    Duffy, E.M.2    Matsui, T.3    Jorgensen, W.L.4
  • 26
    • 0000116495 scopus 로고    scopus 로고
    • Thermodynamic properties of the Williams, OPLS-AA, and MMFF94 all-atom force fields for normal alkanes
    • Chen B, Martin MG, Siepmann JI. Thermodynamic properties of the Williams, OPLS-AA, and MMFF94 all-atom force fields for normal alkanes. J Phys Chem B 1998;102:2578-2586.
    • (1998) J Phys Chem B , vol.102 , pp. 2578-2586
    • Chen, B.1    Martin, M.G.2    Siepmann, J.I.3
  • 29
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 1977;23:327-341.
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 32
    • 0037230926 scopus 로고    scopus 로고
    • Calcium binding to the transmembrane domain of the sarcoplasmic reticulum Ca2+-ATPase: Insights from molecular modeling
    • Costa V, Carloni P. Calcium binding to the transmembrane domain of the sarcoplasmic reticulum Ca2+-ATPase: insights from molecular modeling. Proteins 2003;50:104-113.
    • (2003) Proteins , vol.50 , pp. 104-113
    • Costa, V.1    Carloni, P.2
  • 33
    • 0037380951 scopus 로고    scopus 로고
    • Molecular dynamics simulations of the NGF-TrkA domain 5 complex and comparison with biological data
    • Settanni G, Cattaneo A, Carloni P. Molecular dynamics simulations of the NGF-TrkA domain 5 complex and comparison with biological data. Biophys J 2003;84:2282-2292.
    • (2003) Biophys J , vol.84 , pp. 2282-2292
    • Settanni, G.1    Cattaneo, A.2    Carloni, P.3
  • 36
    • 4243754128 scopus 로고    scopus 로고
    • Nonequilibrium equality for free energy differences
    • Jarzynski C. Nonequilibrium equality for free energy differences. Phys Rev Lett 1997;78:2690-2693.
    • (1997) Phys Rev Lett , vol.78 , pp. 2690-2693
    • Jarzynski, C.1
  • 37
    • 4244116139 scopus 로고    scopus 로고
    • Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach
    • Jarzynski C. Equilibrium free-energy differences from nonequilibrium measurements: a master-equation approach. Phys Rev E 1997;56:5018-5035.
    • (1997) Phys Rev E , vol.56 , pp. 5018-5035
    • Jarzynski, C.1
  • 38
    • 0035957434 scopus 로고    scopus 로고
    • Free energy reconstruction from nonequilibrium single-molecule pulling experiments
    • Hummer G, Szabo A. Free energy reconstruction from nonequilibrium single-molecule pulling experiments. Proc Natl Acad Sci USA 2001;98:3658-3661.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 3658-3661
    • Hummer, G.1    Szabo, A.2
  • 39
    • 0035913537 scopus 로고    scopus 로고
    • Extending the applicability of the nonlinear Poisson-Boltzmann equation: Multiple dielectric constants and multivalent ions
    • Rocchia W, Alexov E, Honig B. Extending the applicability of the nonlinear Poisson-Boltzmann equation: multiple dielectric constants and multivalent ions. J Phys Chem B 2001;28:6507-6514.
    • (2001) J Phys Chem B , vol.28 , pp. 6507-6514
    • Rocchia, W.1    Alexov, E.2    Honig, B.3
  • 40
    • 0029863372 scopus 로고    scopus 로고
    • Molecular dynamics simulations of water within models of ion channels
    • Breed J, Sankararamakrishnan R, Kerr ID, Sansom MS. Molecular dynamics simulations of water within models of ion channels. Biophys J 1996;70:1643-1661.
    • (1996) Biophys J , vol.70 , pp. 1643-1661
    • Breed, J.1    Sankararamakrishnan, R.2    Kerr, I.D.3    Sansom, M.S.4
  • 41
    • 0028068829 scopus 로고
    • Influence of a channel-forming peptide on energy barriers to ion permeation, viewed from a continuum dielectric perspective
    • Partenskii MB, Dorman V, Jordan PC. Influence of a channel-forming peptide on energy barriers to ion permeation, viewed from a continuum dielectric perspective. Biophys J 1994;67:1429-1438.
    • (1994) Biophys J , vol.67 , pp. 1429-1438
    • Partenskii, M.B.1    Dorman, V.2    Jordan, P.C.3
  • 42
    • 0035155532 scopus 로고    scopus 로고
    • Diffusion constant of the TIP5P model of liquid water
    • Mahoney MW, Jorgensen WL. Diffusion constant of the TIP5P model of liquid water. J Chem Phys 2001;114:363-366.
    • (2001) J Chem Phys , vol.114 , pp. 363-366
    • Mahoney, M.W.1    Jorgensen, W.L.2
  • 43
    • 0034723156 scopus 로고    scopus 로고
    • Structural clues in the sequences of the aquaporins
    • Heymann JB, Engel A. Structural clues in the sequences of the aquaporins. J Mol Biol 2000;295:1039-1053.
    • (2000) J Mol Biol , vol.295 , pp. 1039-1053
    • Heymann, J.B.1    Engel, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.