Gene Expression Profile of the Mouse Organ of Corti at the Onset of Hearing

Genomics

Volumn 83, Issue 6, 2004, Pages 1000-1011

  Pompeia, Celine ^a   Hurle, Belen ^b   Belyantseva, Inna A ^a   Noben Trauth, Konrad ^c   Beisel, Kirk ^d   Gao, James ^e   Buchoff, Patee ^e   Wistow, Graeme ^e   Kachar, Bechara ^a  

^a NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS   (United States)

^b NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

^d CREIGHTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e NATIONAL EYE INSTITUTE   (United States)

Author keywords

Apoptosis; cDNA library; Cell division; Deafness; Expressed Sequence Tag Database; Genetics; Hair cells; Internal ear

Indexed keywords

ANIMAL CELL; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; AUTOSOMAL DOMINANT INHERITANCE; CORTI ORGAN; DATA BASE; EXPRESSED SEQUENCE TAG; FEMALE; GENE CLUSTER; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE ISOLATION; GENE MAPPING; HAIR CELL; HEARING; HEARING IMPAIRMENT; MALE; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RECESSIVE GENE; RNA SPLICING; UNINDEXED SEQUENCE;

ANIMALS; APOPTOSIS; CELL DIFFERENTIATION; DEAFNESS; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HEARING; HUMANS; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORGAN OF CORTI;

ANIMALIA; MAMMALIA;

EID: 2642566735     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2004.01.005     Document Type: Article

References (44)

1. Steel K.P., Kros C.J. A genetic approach to understanding auditory function. Nat. Genet. 27:2001;143-149
2. Ryan A.F., Batcher S., Brumm D., O'Driscoll K., Harris J.P. Cloning genes from an inner ear cDNA library. Arch. Otolaryngol. Head Neck Surg. 119:1993;1217-1220
3. Robertson N.G., Khetarpal U., Gutierrez-Espeleta G.A., Bieber F.R., Morton C.C. Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening. Genomics. 23:1994;42-50
4. Harter C., Ripoll C., Lenoir M., Hamel C.P., Rebillard G. Expression pattern of mammalian cochlea outer hair cell (OHC) mRNA: screening of a rat OHC cDNA library. DNA Cell Biol. 18:1999;1-10
5. Coimbra R.S., Weil D., Brottier P., Blanchard S., Levi M., Hardelin J.P., Weissenbach J., Petit C. A subtracted cDNA library from the zebrafish (Danio rerio) embryonic inner ear. Genome Res. 12:2002;1007-1011
6. Abe S., Koyama K., Usami S., Nakamura Y. Construction and characterization of a vestibular-specific cDNA library using T7-based RNA amplification. J. Hum. Genet. 48:2003;142-149
7. Wistow G. A project for ocular bioinformatics: NEIBank. Mol. Vision. 8:2002;161-163
8. Mothe A.J., Brown I.R. Expression of mRNA encoding extracellular matrix glycoproteins SPARC and SC1 is temporally and spatially regulated in the developing cochlea of the rat inner ear. Hear. Res. 155:2001;161-174
9. Girard J.P., Springer T.A. Cloning from purified high endothelial venule cells of hevin, a close relative of the antiadhesive extracellular matrix protein SPARC. Immunity. 2:1995;113-123
10. Mothe A.J., Brown I.R. Expression of mRNA encoding extracellular matrix glycoproteins SPARC and SC1 is temporally and spatially regulated in the developing cochlea of the rat inner ear. Hear. Res. 155:2001;161-174
11. Legan P.K., Rau A., Keen J.N., Richardson G.P. The mouse tectorins: modular matrix proteins of the inner ear homologous to components of the sperm-egg adhesion system. J. Biol. Chem. 272:1997;8791-8801
12. Maeda Y., Fukushima K., Kasai N., Maeta M., Nishizaki K. Quantification of TECTA and DFNA5 expression in the developing mouse cochlea. Neuroreport. 12:2001;3223-3226
13. Moreno-Pelayo M.A., del Castillo I., Villamar M., Romero L., Hernandez-Calvin F.J., Herraiz C., Barbera R., Navas C., Moreno F. A cysteine substitution in the zona pellucida domain of alpha-tectorin results in autosomal dominant, postlingual, progressive, mid frequency hearing loss in a Spanish family. J. Med. Genet. 38:2001;E13
14. Mustapha M., Weil D., Chardenoux S., Elias S., El-Zir E., Beckmann J.S., Loiselet J., Petit C. An alpha-tectorin gene defect causes a newly identified autosomal recessive form of sensorineural pre-lingual non-syndromic deafness, DFNB21. Hum. Mol. Genet. 8:1999;409-412
15. Kirschhofer K., Kenyon J.B., Hoover D.M., Franz P., Weipoltshammer K., Wachtler F., Kimberling W.J. Autosomal-dominant, prelingual, nonprogressive sensorineural hearing loss: localization of the gene (DFNA8) to chromosome 11q by linkage in an Austrian family. Cytogenet. Cell Genet. 82:1998;126-130
16. Verhoeven K., Van Laer L., Kirschhofer K., Legan P.K., Hughes D.C., Schatteman I., Verstreken M., Van Hauwe P., Coucke P., Chen A., Smith R.J., Somers T., Offeciers F.E., Van de Heyning P., Richardson G.P., Wachtler F., Kimberling W.J., Willems P.J., Govaerts P.J., Van Camp G. Mutations in the human alpha-tectorin gene cause autosomal dominant non-syndromic hearing impairment. Nat. Genet. 19:1998;60-62
17. Hughes D.C., Legan P.K., Steel K.P., Richardson G.P. Mapping of the alpha-tectorin gene (TECTA) to mouse chromosome 9 and human chromosome 11: a candidate for human autosomal dominant nonsyndromic deafness. Genomics. 48:1998;46-51
18. Verhoeven K., Van Camp G., Govaerts P.J., Balemans W., Schatteman I., Verstreken M., Van Laer L., Smith R.J., Brown M.R., Van de Heyning P.H., Somers T., Offeciers F.E., Willems P.J. A gene for autosomal dominant nonsyndromic hearing loss (DFNA12) maps to chromosome 11q22-24. Am. J. Hum. Genet. 60:1997;1168-1173
19. Van Camp G., Willems P.J., Smith R.J. Nonsyndromic hearing impairment: unparalleled heterogeneity. Am. J. Hum. Genet. 60:1997;758-764
20. Thalmann I. Proteomics and the inner ear. Dis. Markers. 17:2001;259-270
21. Zheng J., Long K.B., Matsuda K.B., Madison L.D., Ryan A.D., Dallos P.D. Genomic characterization and expression of mouse prestin, the motor protein of outer hair cells. Mamm. Genome. 14:2003;87-96
22. Zheng L., Sekerkova G., Vranich K., Tilney L.G., Mugnaini E., Bartles J.R. The deaf jerker mouse has a mutation in the gene encoding the espin actin-bundling proteins of hair cell stereocilia and lacks espins. Cell. 102:2000;377-385
23. Verpy E., Leibovici M., Zwaenepoel I., Liu X.Z., Gal A., Salem N., Mansour A., Blanchard S., Kobayashi I., Keats B.J., Slim R., Petit C. A defect in harmonin, a PDZ domain-containing protein expressed in the inner ear sensory hair cells, underlies Usher syndrome type 1C. Nat. Genet. 26:2000;51-55
24. Lynch E.D., Lee M.K., Morrow J.E., Welcsh P.L., Leon P.E., King M.C. Nonsyndromic deafness DFNA1 associated with mutation of a human homolog of the Drosophila gene diaphanous. Science. 278:1997;1315-1318
25. Schultz J., Milpetz F., Bork P., Ponting C.P. SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl. Acad. Sci. USA. 95:1998;5857-5864
26. Delprat B., Boulanger A., Wang J., Beaudoin V., Guitton M.J., Venteo S., Dechesne C.J., Pujol R., Lavigne-Rebillard M., Puel J.L., Hamel C.P. Downregulation of otospiralin, a novel inner ear protein, causes hair cell degeneration and deafness. J. Neurosci. 22:2002;1718-1725
27. Delprat B., Boulanger A., Wang J., Beaudoin V., Guitton M.J., Venteo S., Dechesne C.J., Pujol R., Lavigne-Rebillard M., Puel J.L., Hamel C.P. Downregulation of otospiralin, a novel inner ear protein, causes hair cell degeneration and deafness. J. Neurosci. 22:2002;1718-1725
28. Raphael Y. Cochlear pathology, sensory cell death and regeneration. Br. Med. Bull. 63:2002;25-38
29. Friedrichsen S., Christ S., Heuer H., Schafer M.K., Mansouri A., Bauer K., Visser T.J. Regulation of iodothyronine deiodinases in the Pax8-/- mouse model of congenital hypothyroidism. Endocrinology. 144:2003;777-784
30. Velasco-Miguel S., Buckbinder L., Jean P., Gelbert L., Talbott R., Laidlaw J., Seizinger B., Kley N. PA26, a novel target of the p53 tumor suppressor and member of the GADD family of DNA damage and growth arrest inducible genes. Oncogene. 18:1999;127-137
31. Murphy P.R., Knee R.S. Identification and characterization of an antisense RNA transcript (gfg) from the human basic fibroblast growth factor gene. Mol. Endocrinol. 8:1994;852-859
32. Mitchelmore C., Kjaerulff K.M., Pedersen H.C., Nielsen J.V., Rasmussen T.E., Fisker M.F., Finsen B., Pedersen K.M., Jensen N.A. Characterization of two novel nuclear BTB/POZ domain zinc finger isoforms: association with differentiation of hippocampal neurons, cerebellar granule cells, and macroglia. J. Biol. Chem. 277:2002;7598-7609
33. Wang S.S., Betz A.G., Reed R.R. Cloning of a novel Olf-1/EBF-like gene, O/E-4, by degenerate oligo-based direct selection. Mol. Cell. Neurosci. 20:2002;404-414
34. de Kok Y.J., van der Maarel S.M., Bitner-Glindzicz M., Huber I., Monaco A.P., Malcolm S., Pembrey M.E., Ropers H.H., Cremers F.P. Association between X-linked mixed deafness and mutations in the POU domain gene POU3F4. Science. 267:1995;685-688
35. Yi C.H., Terrett J.A., Li Q.Y., Ellington K., Packham E.A., Armstrong-Buisseret L., McClure P., Slingsby T., Brook J.D. Identification, mapping, and phylogenomic analysis of four new human members of the T-box gene family: EOMES, TBX6, TBX18, and TBX19. Genomics. 55:1999;10-20
36. Sobkowicz H.M., August B.K., Slapnick S.M. Influence of neurotrophins on the synaptogenesis of inner hair cells in the deaf Bronx waltzer (bv) mouse organ of Corti in culture. Int. J. Dev. Neurosci. 20:2002;537-554
37. Tonner E., Barber M.C., Allan G.J., Beattie J., Webster J., Whitelaw C.B., Flint D.J. Insulin-like growth factor binding protein-5 (IGFBP-5) induces premature cell death in the mammary glands of transgenic mice. Development. 129:2002;4547-4557
38. Schneider M.R., Zhou R., Hoeflich A., Krebs O., Schmidt J., Mohan S., Wolf E., Lahm H. Insulin-like growth factor-binding protein-5 inhibits growth and induces differentiation of mouse osteosarcoma cells. Biochem. Biophys. Res. Commun. 288:2001;435-442
39. Yang X., Tare R.S., Partridge K.A., Roach H.I., Clarke N.M., Howdle S.M., Shakesheff K.M., Oreffo R.O. Induction of human osteoprogenitor chemotaxis, proliferation, differentiation, and bone formation by osteoblast stimulating factor-1/pleiotrophin: osteoconductive biomimetic scaffolds for tissue engineering. J. Bone Miner. Res. 18:2003;47-57
40. Hu S., Vincenz C., Ni J., Gentz R., Dixit V.M. I-FLICE, a novel inhibitor of tumor necrosis factor receptor-1- and CD-95-induced apoptosis. J. Biol. Chem. 272:1997;17255-17257
41. Cory S., Adams J.M. The Bcl2 family: regulators of the cellular life-or-death switch. Nat. Rev. Cancer. 2:2002;647-656
42. Kim S.W., Hayashi M., Lo J.F., Yang Y., Yoo J.S., Lee J.D. ADP-ribosylation factor 4 small GTPase mediates epidermal growth factor receptor-dependent phospholipase D2 activation. J. Biol. Chem. 278:2003;2661-2668
43. Greenhalgh C.J., Metcalf D., Thaus A.L., Corbin J.E., Uren R., Morgan P.O., Fabri L.J., Zhang J.G., Martin H.M., Willson T.A., Billestrup N., Nicola N.A., Baca M., Alexander W.S., Hilton D.J. Biological evidence that SOCS-2 can act either as an enhancer or suppressor of growth hormone signaling. J. Biol. Chem. 277:2002;40181-40184
44. Hoang B., Moos M. Jr., Vukicevic S., Luyten F.P. Primary structure and tissue distribution of FRZB, a novel protein related to Drosophila frizzled, suggest a role in skeletal morphogenesis. J. Biol. Chem. 271:1996;26131-26137