BKV-DNA and JCV-DNA co-quantification assay to evaluate viral load in urine and serum

Molecular Biotechnology

Volumn 30, Issue 1, 2005, Pages 1-8

  Merlino, Chiara ^a   Bergallo, Massimiliano ^a   Daniele, Roberta ^a   Ponzi, Alessandro Negro ^a   Cavallo, Rossana ^a  

^a UNIVERSITY OF TURIN   (Italy)

Author keywords

BKV DNA; Co quantification; JCV DNA; Renal transplant recipients; Semiquantitative nested PCR

Indexed keywords

BODY FLUIDS; CHEMICAL REACTIONS; IMMUNOLOGY; SENSITIVITY ANALYSIS; VIRUSES;

BKV-DNA; CO-QUANTIFICATION; JCV-DNA; RENAL TRANSPLANT RECIPIENTS; SEMIQUANTITATIVE-NESTED PCR;

DNA;

DNA FRAGMENT; NUCLEOTIDYLTRANSFERASE INHIBITOR; PRIMER DNA; TAQ POLYMERASE; VIRUS DNA; VIRUS LARGE T ANTIGEN;

ARTICLE; BK VIRUS; BLOOD SAMPLING; CHEMICAL REACTION; CONTROLLED STUDY; GENETIC SCREENING; HUMAN; IMMUNOSUPPRESSIVE TREATMENT; INFECTION RISK; JC VIRUS; KIDNEY DISEASE; KIDNEY GRAFT; MEDICAL ASSESSMENT; MONITOR; NONHUMAN; POLYMERASE CHAIN REACTION; QUANTITATIVE ASSAY; RECIPIENT; SENSITIVITY ANALYSIS; URINALYSIS; VIRUS DETECTION; VIRUS LOAD;

BK POLYOMAVIRUS; POLYOMAVIRUS;

EID: 26244434870     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1385/mb:30:1:001     Document Type: Article

References (39)

1. Gardner, S. D., Field, A. M., Coleman, D. V., and Hulme, B. (1971) New human papovavirus (BK) isolated from urine after renal transplantation. Lancet 1, 1253-1257.
2. Padgett, B. L., Walker, D. L., Zurhein, G. M., Eckroade, R. J., and Dessel, B. H. (1971) Cultivation of papovalike virus from human brain with progressive multifocal leukoencephalopathy. Lancet 1, 1257-1260.
3. Gardner, S. D. (1973) Prevalence in England of antibody to human polyomavirus BK. Brit. Med. J. 1, 77-78.
4. Shah, K. V. (2000) Human polyomavirus BKV and renal disease. Nephrol. Dial. Transplant. 15, 754-755.
5. Pappo, O., Demetris, A. J., Raikow, R. B., and Randhawa, P. S. (1996) Human polyoma virus infection of renal allografts: histopathological diagnosis, clinical significance, and literature review. Mod. Pathol. 9, 105-109.
6. Smith, R. D., Galla, J. H., Skahan, K., Anderson, P., Linnemann, C. C. Jr., et al. (1998) Tubulointerstitial nephritis due to a mutant polyomavirus BK virus strain, BKV(Cin), causing end-stage renal disease. J. Clin. Microbiol. 36, 1660-1665.
7. Boubenider, S., Hiesse, C., Marchand, S., Hafi, A., Kriaa, F., and Charpentier, B. (1999) Post-transplantation polyomavirus infections. J. Nephrol. 12, 24-29.
8. Howell, D. N., Smith, S. R., Butterly, D. W., Klassen, P. S., Krigman, H. R., Burchette, J. L. Jr., and Miller, S. E. (1999) Diagnosis and management of BK polyomavirus interstitial nephritis in renal transplant recipients. Transplantation 68, 1279-1288.
9. Nickeleit, V., Hirsch, H., Binet, I. F., Gudat, F., Prince, O., Dalquen, P., et al. (1999) Polyoma virus infection of renal allograft recipients. From latent infection to manifest disease. J. Am. Soc. Nephrol. 10, 1080-1089.
10. Andrews, C., Shah, K. V., Rubin, R., and Hirsch, M. (1982) BKV papovavirus infections in renal transplant recipients: contribution of donor kidneys. J. Infect. Dis. 145, 276-279.
11. Heritage, J., Chesters, P. M., and McCance, D. J. (1981) The persistence of papovavirus BK DNA sequences in normal human renal tissue. J. Med. Virol. 8, 143-145.
12. Chesters, P. M., Heritage, J., and McCance, D. J. (1983) Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. J. Infect. Dis. 147, 676-684.
13. Hogan, T. F., Borden, E. C., McBain, J. A., Padgett, B. L., and Walker, D. L. (1980) Human polyomavirus infections with JC virus and BK virus in renal transplant patients. Ann. Intern. Med. 92, 373-378.
14. Gardner, S.D., Mackenzie, E. F. D., Smith, C., and Porter, A. A. (1984) Prospective study of the human polyomaviruses BK and JC and cytomegalovirus in renal transplant recipients. J. Clin. Pathol. 37, 578-586.
15. Andrews, C. A., Shah, K. V., Daniel, R. W., Hirsch, M. S., and Rubin, R. H. (1988) A serological investigation of BK virus and JC virus infections in recipients of renal allografts. J. Infect. Dis. 158, 176-181.
16. Merlino, C., Bergallo M., Daniele, R., Scutera, S., Giacchino, F., Comune, L., et al. (2004) Co-detection and discrimination of JCV and BKV DNA by duplex nested-PCR in renal transplant recipients. PanMinerva Med. 46, 153-159.
17. Randhawa, P., Baksh, F., Aoki, N., Tschirhart, D., and Finkelstein, S. (2001) JC virus infection in allograft kidneys. Analysis by polymerase chain reaction and immunochemistry. Transplantation 71, 1300-1303.
18. Eggers, C., Stelbrink, H. J., Buhk, T., and Dorries, K. (1999) Quantification of JC virus DNA in the cerebrospinal fluid of patients with human immunodeficiency virus-associated progressive multifocal leukoencephalopathy - a longitudinal study. J. Infect. Dis. 180, 1690-1694.
19. Koralnik, I. J., Schmitz, J. E., Lifton, M. A., Forman, M. A., and Letvin, N. L. (1999) Detection of JC virus DNA in peripheral blood cell subpopulations of HIV-1 infected individuals. Neurovirology 5, 430-435.
20. Biel, S. S., Held, T. K., Landt, O., Niedrig, M., Gelderblom, H. R., Siegert, W., et al. (2000) Rapid quantification and differentation of human polyomavirus DNA in undiluted urine from patients after bone marrow transplantation. J. Clin. Microbiol. 38, 3689-3695.
21. Drews, K., Bashir, T., and Dorries, K. (2000) Quantification of human polyomavirus JC in brain tissue and cerebrospinal fluid of patients with progressive multifocal leukoencephalopathy by competitive PCR. J. Virol. Methods 84, 23-36.
22. Fedele, C. G., Avellon, A., Ciardi, M., Delia, S., and Tenorio, A. (2000) Quantitation of polyomavirus DNA by a competitive nested polymerase chain reaction. J. Virol. Methods 88, 51-61.
23. Leung, A. Y., Suen, C. K., Lie, A. K., Liang, R. H., Yuen, K. Y., and Kwong, Y. L. (2001) Quantification of polyoma BK viruria in hemorrhagic cystitis complicating bone marrow transplantation. Blood 98, 1971-1978.
24. Limaye, A. P., Jerome, K. R., Kuhr, C. S., Ferrenberg, J., Huang, M. L., Davis, C. L., et al. (2001) Quantitation of BK virus load in serum for the diagnosis of BK virus-associated nephropathy in renal transplant recipients. J. Infect. Dis. 183, 1669-1672.
25. Andreoletti, L., Lescieux, A., Lambert, V., Si-Mohamed, A., Malta, M., Wattre, P., and Belec, L. (2002) Semiquantitative detection of JCV-DNA in peripheral blood leukocytes from HIV-1-infected patients with or without progressive multifocal leukoencephalopathy. J. Med. Virol. 66, 1-7.
26. Bergallo, M., Merlino, C., Bollero, C., Scutera, S., Sinesi, F., and Cavallo, R. (2002) Human polyomavirus BK (BKV)-DNA detection by nested-PCR in renal transplant recipients. New Microbiol. 25, 331-334.
27. Garcia de Viedma, D., Diaz Infantes, M., Miralles, P., Berenguer, J., Marin, M., Munzo, L., et al. (2002) JC virus load in progressive multifocal leukoencephalopathy: analysis of the correlation between the viral burden in cerebrospinal fluid, patient survival, and the volume of neurological lesions. Clin. Infect. Dis. 34, 1568-1575.
28. Leung, A. Y. H., Chan, M., Tang, S. C. W., Liang, R., and Kwong, Y. L. (2002) Real-time quantitative analysis of polioma BK viremia and viruria in renal allograft recipients. J. Virol. Methods 103, 51-56.
29. Merlino, C., Bergallo, M., Gribaudo, G., Gregori, G., Segolini, G. P., Giacelino, F., et al. (2003) Polyomavirus BK DNA quantification in renal transplant recipients. J. Clin. Virol. 28, 265-274.
30. Dickover, R. E, Donovan, R. M., Goldstein, F., Dandekar, S., Bush, C. F., and Carlson, J. R. (1990) Quantitation of human immunodeficiency virus DNA by using the polymerase chain reaction. J. Clin. Microbiol. 28, 2130-2133.
31. Bergallo, M., Merlino, C., Daniele, R., Sinesi, F., Fumagalli, M., Negro Ponzi, A., and Cavallo, R. (2004) Double-step PCR assay to quantify Epstein Barr viral load in peripheral blood. Mol. Biotechnol. 20, 187-195.
32. Ferrante, P., Caldarelli-Stefano, R., Omodeo-Zorini, E., Vago, L., Boldorini, R., and Costanzo, G. (1995) PCR detection of JC virus DNA in brain tissue from patients with and without progressive multifocal leukoencephalopathy. J. Med. Virol. 47, 219-225.
33. Cole, C. N. and Conzen, S. D. (2001) Polyomaviridae: the viruses and their replication. In: Fields-Virology, Vol. 2, Fourth Edition (Knipe D. M. and Howley P.M., eds.). Lippincott Williams & Wilkins, Philadelphia, 2141-2174.
34. Gibson, U. E., Heid, C. A., and Williams, P. M. (1996) A novel method for real time quantitative RT-PCR. Genome Res. 6, 995-1001.
35. Heid, C. A., Stevens, J., Livak, K. J., and Williams, P. M. (1996) Real time quantitative PCR. Genome Res. 6, 986-994.
36. Storch, G. A. (2001) Diagnostic virology. In: Fields-Virology, Vol. 1 (Knipe D. M. and Howley P.M., eds). Lippincott Williams & Wilkins, Philadelphia, 493-531.
37. Poli, F., Cattaneo, R., Crespiatico, L., Nocco, A., and Sirchia, G. (1993) A rapid and simple method for reversing the inhibitory effect of heparin on PCR for HLA class II typing. PCR Methods Appl. 2, 356-358.
38. Zipeto, D., Baldanti, F., Zella, D., Furione, M., Cavicchini, A., Milanesi, G., and Gerna, G. (1993) Quantification of human cytomegalovirus DNA in peripheral blood polymorphonuclear leukocytes of immunocompromised patients by the polymerase chain reaction. J. Virol. Methods 44, 45-56.
39. Ochert, A. S., Boulter, A. W., Birnbaum, W., Johnson, N. W., and Teo, C. G. (1994) Inhibitory effect of salivary fluids on PCR: potency and removal. PCR Methods Appl. 3, 365-368.