Chicken CD1 genes are located in the MHC: CD1 and endothelial protein C receptor genes constitute a distinct subfamily of class-I-like genes that predates the emergence of mammals

Immunogenetics

Volumn 57, Issue 8, 2005, Pages 590-600

  Maruoka, Takako ^a,b   Tanabe, Hideyuki ^b   Chiba, Marin ^b   Kasahara, Masanori ^a,b  

^a HOKKAIDO UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

CD1; Chicken; Endothelial protein C receptor; MHC

Indexed keywords

CD1 ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN; PROTEIN C; RECEPTOR PROTEIN;

ANIMAL TISSUE; ARTICLE; CHROMOSOMAL LOCALIZATION; CHROMOSOME 16; CONTROLLED STUDY; ENDOTHELIUM CELL; FLUORESCENCE; GENE LOCATION; GENE SEQUENCE; GENETIC LINE; GENETIC LINKAGE; IN SITU HYBRIDIZATION; MAJOR HISTOCOMPATIBILITY COMPLEX; MAMMAL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FAMILY;

AMINO ACID SEQUENCE; ANIMALS; ANTIGENS, CD; ANTIGENS, CD1; BASE SEQUENCE; CHICKENS; CHROMOSOME MAPPING; DNA, COMPLEMENTARY; ENDOTHELIUM, VASCULAR; GENES, MHC CLASS I; GLYCOPROTEINS; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR SEQUENCE DATA; RECEPTORS, CELL SURFACE;

GALLUS GALLUS; MAMMALIA;

EID: 25844526524     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-005-0016-y     Document Type: Article

References (63)

1. Albertson DG, Fishpool R, Sherrington P, Nacheva E, Milstein C (1988) Sensitive and high resolution in situ hybridization to human chromosomes using biotin labelled probes: assignment of the human thymocyte CD1 antigen genes to chromosome 1. EMBO J 7:2801-2805
2. Araki T, Gejyo F, Takagaki K, Haupt H, Schwick HG, Buergi W, Marti T, Schaller J, Rickli E, Brossmer R, Atkinson PH, Putnam FW, Schmid K (1988) Complete amino acid sequence of human plasma Zn-α2-glycoprotein and its homology to histocompatibility antigens. Proc Natl Acad Sci U S A 85:679-683
3. Bahram S (2000) MIC genes: from genetics to biology. Adv Immunol 76:1-60
4. Bahram S, Bresnahan M, Geraghty DE, Spies T (1994) A second lineage of mammalian major histocompatibility complex class I genes. Proc Natl Acad Sci U S A 91:6259-6263
5. Balk SP, Bleicher PA, Terhorst C (1991) Isolation and expression of cDNA encoding the murine homologues of CD1. J Immunol 146:768-774
6. Bloom SE, Bacon LD (1985) Linkage of the major histocompatibility (B) complex and the nucleolar organizer in the chicken. Assignment to a microchromosome. J Heredity 76:146-154
7. Calabi F, Milstein C (1986) A novel family of human major histocompatibility complex-related genes not mapping to chromosome 6. Nature 323:540-543
8. Calabi F, Belt KT, Yu CY, Bradbury A, Mandy WJ, Milstein C (1989a) The rabbit CD1 and the evolutionary conservation of the CD1 gene family. Immunogenetics 30:370-377
9. Calabi F, Jarvis JM, Martin L, Milstein C (1989b) Two classes of CD1 genes. Eur J Immunol 19:285-292
10. Chen YH, Chiu NM, Mandal M, Wang N, Wang CR (1997) Impaired NK1+ T cell development and early IL-4 production in CD1-deficient mice. Immunity 6:459-467
11. Dascher CC, Brenner MB (2003) Evolutionary constraints on CD1 structure: insights from comparative genomic analysis. Trends Immunol 24:412-418
12. Dascher CC, Hiromatsu K, Naylor JW, Brauer PP, Brown KA, Storey JR, Behar SM, Kawasaki ES, Porcelli SA, Brenner MB, LeClair KP (1999) Conservation of a CD1 multigene family in the guinea pig. J Immunol 163:5478-5488
13. Feder JN, Gnirke A, Thomas W, Tsuchihashi Z, Ruddy DA, Basava A, Dormishian F, Domingo RJ, Ellis MC, Fullan A, Hinton LM, Jones NL, Kimmel BE, Kronmal GS, Lauer P, Lee VK, Loeb DB, Mapa FA, McClelland E, Meyer NC, Mintier GA, Moeller N, Moore T, Morikang E, Prass CE, Quintana L, Starnes SM, Schatzman RC, Brunke KJ, Drayna DT, Risch NJ, Bacon BR, Wolff RK (1996) A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis. Nat Genet 13:399-408
14. Fillon V, Morisson M, Zoorob R, Auffray C, Douaire M, Gellin J, Vignal A (1998) Identification of 16 chicken microchromosomes by molecular markers using two-colour fluorescence in situ hybridization (FISH). Chromosome Res 6:307-313
15. Flajnik MF, Kasahara M (2001) Comparative genomics of the MHC: glimpses into the evolution of the adaptive immune system. Immunity 15:351-362
16. Frangoulis B, Park I, Guillemot F, Severac V, Auffray C, Zoorob R (1999) Identification of the Tapasin gene in the chicken major histocompatibility complex. Immunogenetics 49:328-337
17. Fukudome K, Esmon CT (1994) Identification, cloning, and regulation of a novel endothelial cell protein C/activated protein C receptor. J Biol Chem 269:26486-26491
18. Hagios C, Koch M, Spring J, Chiquet M, Chiquet-Ehrismann R (1996) Tenascin-Y: a protein of novel domain structure is secreted by differentiated fibroblasts of muscle connective tissue. J Cell Biol 134:1499-1512
19. Hashimoto K, Hirai M, Kurosawa Y (1995) A gene outside the human MHC related to classical HLA class I genes. Science 269:693-695
20. Hayashi T, Nakamura H, Okada A, Takebayashi S, Wakita T, Yuasa H, Okumura K, Suzuki K (1999) Organization and chromosomal localization of the human endothelial protein C receptor gene. Gene 238:367-373
21. Hayes SM, Knight KL (2001) Group 1 CD1 genes in rabbit. J Immunol 166:403-410
22. Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, Bork P, Burt DW, Groenen MA, Delany ME, Dodgson JB, Chinwalla AT, Cliften PF, Clifton SW, Delehaunty KD, Fronick C, Fulton RS, Graves TA, Kremitzki C, Layman D, Magrini V, McPherson JD, Miner TL, Minx P, Nash WE, Nhan MN, Nelson JO, Oddy LG, Pohl CS, Randall-Maher J, Smith SM, Wallis JW, Yang SP, Romanov MN, Rondelli CM, Paton B, Smith J, Morrice D, Daniels L, Tempest HG, Robertson L, Masabanda JS, Griffin DK, Vignal A, Fillon V, Jacobbson L, Kerje S, Andersson L, Crooijmans RP, Aerts J, van der Poel JJ, Ellegren H, Caldwell RB, Hubbard SJ, Grafham DV, Kierzek AM, McLaren SR, Overton IM, Arakawa H, Beattie KJ, Bezzubov Y, Boardman PE, Bonfield JK, Croning MD, Davies RM, Francis MD, Humphray SJ, Scott CE, Taylor RG, Tickle C, Brown WR, Rogers J, Buerstedde JM, Wilson SA, Stubbs L, Ovcharenko I, Gordon L, Lucas S, Miller MM, Inoko H, Shiina T, Kaufman J, Salomonsen J, Skjoedt K, Wong GK, Wang J, Liu B, Yu J, Yang H, Nefedov M, Koriabine M, Dejong PJ, Goodstadt L, Webber C, Dickens NJ, Letunic I, Suyama M, Torrents D, von Mering C, Zdobnov EM et al (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695-716
23. Ichimiya S, Kikuchi K, Matsuura A (1994) Structural analysis of the rat homologue of CD1. Evidence for evolutionary conservation of the CD1D class and widespread transcription by rat cells. J Immunol 153:1112-1123
24. Kasahara M (1999) The chromosomal duplication model of the major histocompatibility complex. Immunol Rev 167:17-32
25. Kasahara M, Nakaya J, Satta Y, Takahata N (1997) Chromosomal duplication and the emergence of the adaptive immune system. Trends Genet 13:90-92
26. Kasahara M, Watanabe Y, Sumasu M, Nagata T (2002) A family of MHC class I-like genes located in the vicinity of the mouse leukocyte receptor complex. Proc Natl Acad Sci U S A 99:13687-13692
27. Kaufman J, Bumstead N, Miller M, Riegert P, Salomonsen J (1995) The chicken class II α gene is located outside the B complex. In: Davison TF, Bumstead N, Kaiser P (eds) Advances in avian immunology research. Carfax, Abingdon, pp 119-127
28. Kaufman J, Jacob J, Shaw I, Walker B, Milne S, Beck D, Salomonsen J (1999a) Gene organisation determines evolution of function in the chicken MHC. Immunol Rev 167:101-117
29. Kaufman J, Milne S, Gobel TW, Walker BA, Jacob JP, Auffray C, Zoorob R, Beck S (1999b) The chicken B locus is a minimal essential major histocompatibility complex. Nature 401:923-925
30. Kelley J, Walter L, Trowsdale J (2005) Comparative genomics of major histocompatibility complexes. Immunogenetics 56:683-695
31. Klein J (1986) Natural history of the major histocompatibility complex. Wiley, New York
32. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
33. Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132
34. Liang Z, Rosen ED, Castellino FJ (1999) Nucleotide structure and characterization of the murine gene encoding the endothelial cell protein C receptor. Thromb Haemost 81:585-588
35. Martin LH, Calabi F, Milstein C (1986) Isolation of CD1 genes: a family of major histocompatibility complex-related differentiation antigens. Proc Natl Acad Sci U S A 83:9154-9158
36. Maruyama K, Sugano S (1994) Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene 138:171-174
37. Matsuura A, Kinebuchi M, Katabami S, Chen HZ, Yamada K, Yoshida MC, Horie M, Watanabe TK, Kikuchi K, Sato N (1999) Correction and confirmation of the assignment of Cd1d the evolutionarily conserved CD1D class gene to rat chromosome 2q34 and its relationship to human and mouse loci. Cytogenet Cell Genet 86:323-324
38. Mendiratta SK, Martin WD, Hong S, Boesteanu A, Joyce S, Van Kaer L (1997) CD1d1 mutant mice are deficient in natural T cells that promptly produce IL-4. Immunity 6:469-477
39. Meyer A, Zardoya R (2003) Recent advances in the (molecular) phylogeny of vertebrates. Annu Rev Ecol Evol Syst 34:311-338
40. Miller MM, Bacon LD, Hala K, Hunt HD, Ewald SJ, Kaufman J, Zoorob R, Briles WE (2004) 2004 Nomenclature for the chicken major histocompatibility (B and Y) complex. Immunogenetics 56:261-279
41. Miller MM, Wang C, Parisini E, Coletta RD, Goto RM, Lee SY, Barral DC, Townes M, Roura-Mir C, Ford HL, Brenner MB, Dascher CC (2005) Characterization of two avian MHC-like genes reveals an ancient origin of the CD1 family. Proc Natl Acad Sci U S A 102:8674-8679
42. Mincheva A, Rothbarth K, Werner D, Lichter P (1995) Assignment of the gene encoding centrosome-associated protein CCD41 to mouse chromosome 2H. Mamm Genome 6:444
43. Moseley WS, Watson ML, Kingsmore SF, Seldin MF (1989) CD1 defines conserved linkage group border between human chromosome 1 and mouse chromosomes 1 and 3. Immunogenetics 30:378-382
44. Oganesyan V, Oganesyan N, Terzyan S, Qu D, Dauter Z, Esmon NL, Esmon CT (2002) The crystal structure of the endothelial protein C receptor and a bound phospholipid. J Biol Chem 277:24851-24854
45. Park SH, Bendelac A (2000) CD1-restricted T-cell responses and microbial infection. Nature 406:788-792
46. Radosavljevic M, Bahram S (2003) In vivo immunogenetics: from MIC to RAET1 loci. Immunogenetics 55:1-9
47. Salomonsen J, Marston D, Avila D, Bumstead N, Johansson B, Juul-Madsen H, Olesen GD, Riegert P, Skjodt K, Vainio O, Wiles MV, Kaufman J (2003) The properties of the single chicken MHC classical class II alpha chain (B-LA) gene indicate an ancient origin for the DR/E-like isotype of class II molecules. Immunogenetics 55:605-614
48. Salomonsen J, Sorensen MR, Marston DA, Rogers SL, Collen T, van Hateren A, Smith AL, Beal RK, Skjodt K, Kaufman J (2005) Two CD1 genes map to the chicken MHC, indicating that CD1 genes are ancient and likely to have been present in the primordial MHC. Proc Natl Acad Sci U S A 102:8668-8673
49. Sandoval IV, Bakke O (1994) Targeting of membrane proteins to endosomes and lysosomes. Trends Cell Biol 4:292-297
50. Scarpati EM, DiCorleto PE (1996) Identification of a thrombin response element in the human platelet-derived growth factor B-chain (c-sis) promoter. J Biol Chem 271:3025-3032
51. Simister NE, Mostov KE (1989) An Fc receptor structurally related to MHC class I antigens. Nature 337:184-187
52. Simister NE, Rees AR (1985) Isolation and characterization of an Fc receptor from neonatal rat small intestine. Eur J Immunol 15:733-738
53. Simmonds RE, Lane DA (1999) Structural and functional implications of the intron/exon organization of the human endothelial cell protein C/activated protein C receptor (EPCR) gene: comparison with the structure of CD1/major histocompatibility complex alpha1 and alpha2 domains. Blood 94:632-641
54. Sugita M, Cernadas M, Brenner MB (2004) New insights into pathways for CD1-mediated antigen presentation. Curr Opin Immunol 16:90-95
55. Tanabe H, Kupper K, Ishida T, Neusser M, Mizusawa H (2005) Inter- and intra-specific gene-density-correlated radial chromosome territory arrangements are conserved in Old World monkeys. Cytogenet Genome Res 108:255-261
56. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
57. Todorov PT, McDevitt TM, Meyer DJ, Ueyama H, Ohkubo I, Tisdale MJ (1998) Purification and characterization of a tumor lipid-mobilizing factor. Cancer Res 58:2353-2358
58. Treiner E, Duban L, Bahram S, Radosavljevic M, Wanner V, Tilloy F, Affaticati P, Gilfillan S, Lantz O (2003) Selection of evolutionarily conserved mucosal-associated invariant T cells by MR1. Nature 422:164-169
59. Vincent MS, Gumperz JE, Brenner MB (2003) Understanding the function of CD1-restricted T cells. Nat Immunol 4:517-523
60. Watanabe Y, Maruoka T, Walter L, Kasahara M (2004) Comparative genomics of the Mill family: a rapidly evolving MHC class I gene family. Eur J Immunol 34:1597-1607
61. West AP Jr, Herr AB, Bjorkman PJ (2004) The chicken yolk sac IgY receptor, a functional equivalent of the mammalian MHC-related Fc receptor, is a phospholipase A2 receptor homolog. Immunity 20:601-610
62. Zeng Z, Castano AR, Segelke BW, Stura EA, Peterson PA, Wilson IA (1997) Crystal structure of mouse CD1: an MHC-like fold with a large hydrophobic binding groove. Science 277:339-345
63. Zou Z, Nomura M, Takihara Y, Yasunaga T, Shimada K (1996) Isolation and characterization of retinoic acid-inducible cDNA clones in F9 cells: a novel cDNA family encodes cell surface proteins sharing partial homology with MHC class I molecules. J Biochem (Tokyo) 119:319-328