Genetic variation of Kogia spp. with preliminary evidence for two species of Kogia sima

Marine Mammal Science

Volumn 21, Issue 4, 2005, Pages 619-634

  Chivers, S J ^a   Leduc, R G ^a   Robertson, K M ^a   Barros, N B ^b,c   Dizon, A E ^a  

^a SOUTHWEST FISHERIES SCIENCE CENTER   (United States)

^b SeaWorld Inc   (United States)

^c MOTE MARINE LABORATORY   (United States)

Author keywords

Cetaceans; Control region; Cytochrome b; Dwarf sperm whale; Kogia breviceps; Kogia sima; mtDNA; Phylogeny; Pygmy sperm whale

Indexed keywords

GENETIC VARIATION; PHYLOGENY; PHYLOGEOGRAPHY; WHALE;

ANIMALIA; CETACEA; KOGIA; KOGIA BREVICEPS; KOGIA SIMA; KOGIA SIMUS;

EID: 25844475165     PISSN: 08240469     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1748-7692.2005.tb01255.x     Document Type: Article

References (43)

1. AMOS, W. 1997. Marine mammal tissue sample collection and preservation for genetic analyses. Pages 107-113 in A. E. Dizon, S. J. Chivers and W. F. Perrin, eds. Molecular genetics of marine mammals. Special Publication No. 3, Society of Marine Mammalogy, Lawrence, KS.
2. AMOS, W., AND A. R. HOELZEL. 1991. Long-term preservation of whale skin for DNA analysis. Report of the International Whaling Commission (Special Issue 13):99-103.
3. APPLIED BIOSYSTEMS INC. 1992. SeqEd version 1.0.3. Applied Biosystems Inc., Foster City, CA.
4. ÁRNASON, U., A. GULLBERG AND B. WIDEGREN. 1991. The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus. Journal of Molecular Evolution 33:556-568.
5. BAKER, C. S., F. CIPRIANO AND S. R. PALUMBI. 1996. Molecular genetic identification of whale and dolphin products from commercial markets in Korea and Japan. Molecular Ecology 5:671-685.
6. BALLANCE, L. T. AND R. L. PITMAN. 1998. Cetaceans of the western tropical Indian Ocean: Distribution, relative abundance, and comparisons with cetacean communities of the two other tropical ecosystems. Marine Mammal Science 14:429-459.
7. BREESE, D. AND B. R. TERSHY. 1993. Relative abundance of Cetacea in the Canal de Ballenas, Gulf of California. Marine Mammal Science 9:319-324.
8. CALDWELL, D. K., AND M. C. CALDWELL. 1989. Pygmy sperm whale Kogia breviceps (de Blainville, 1838): Dwarf sperm whale Kogia simus Owen, 1866. Pages 235-260 in S. H. Ridgway and R. Harrison, eds. Handbook of marine mammals. Volume 4. Academic Press, San Diego, CA.
9. CRACRAFT, J. 1987. Species concepts and the ontology of evolution. Biology and Philosophy 2:329-346.
10. CRACRAFT, J. 1997. Species concepts in systematics and conservation biology - an ornithological viewpoint. Pages 325-339 in M. F. Claridge, H. A. Dawah and M. R. Wilson, eds. Species: The units of biodiversity. Chapman and Hall, New York, NY.
11. DAVIES, J. L. 1963. The antitropical factor in cetacean speciation. Evolution 17:107-116.
12. FELSENSTEIN, J. 1984. Distance methods for inferring phylogenies: A justification. Evolution 38:16-24.
13. GEMMELL, N. J. AND S. AKIYAMA. 1996. An efficient method for the extraction of DNA from vertebrate tissue. Trends in Genetics 12:338-339.
14. HAGELBERG, E. 1994. Mitochondrial DNA from ancient bone. Pages 195-204 in B. Herrmann and S. Hummel, eds. Ancient DNA. Springer-Verlag, New York, NY.
15. HANDLEY, C. O., JR. 1966. A synopsis of the genus Kogia (pygmy sperm whales). Pages 62-69 in K. S. Norris, ed. Whales, dolphins, and porpoises. University of California Press, Los Angeles, CA.
16. HILL, P. S. AND J. BARLOW. 1992. Report of a marine mammal survey of the California coast aboard the research vessel McArthur July 28-November 5, 1991. NOAA-Technical Memorandum-NMFS-SWFSC-169. 103 pp.
17. KINZEY, D., T. GERRODETTE, J. BARLOW, A. DIZON, W. FERRYMAN, P. OLSON AND A. VONSAUNDER. 1999. Marine mammal data collected during a survey in the eastern tropical Pacific Ocean aboard the NOAA ships McArthur and David Starr Jordan and the UNOLS ship Endeavor July 31-December 9, 1998. NOAA-Technical Memorandum-NMFS-SWFSC-283. 113 pp.
18. KINZEY, D., T. GERRODETTE, J. BARLOW, A. DIZON, W. PERRYMAN AND P. OLSON. 2000. Marine mammal data collected during a survey in the eastern tropical Pacific Ocean aboard the NOAA ships McArthur and David Starr Jordan July 28-December 9, 1999. NOAA-Technical Memorandum-NMFS-SWFSC-293. 89 pp.
19. KOCHER, T. D., W. K. THOMAS, A. MEYER, S. V. EDWARDS, S. PAABO, F. X. VILLABLANCA AND A. C. WILSON. 1989. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences 86:6196-6200.
20. LEDUC, R. G., W. F. PERRIN AND A. E. DIZON. 1999. Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences. Marine Mammal Science 15:619-648.
21. LUCAS, Z. N. AND S. K. HOOKER. 2000. Cetacean strandings on Sable Island, Nova Scotia, 1970-1998. Canadian Field-Naturalist 114:45-61.
22. MADDISON, W. P., AND D. R. MADDISON. 1992. MacClade: Analysis of phylogeny and character evolution. Sinauer Associates, Inc., Sunderland, MA.
23. MARTIN, A. P. AND S. R. PALUMBI. 1993. Protein evolution in different cellular environments: Cytochrome b in sharks and mammals. Molecular Biology and Evolution 10:873-891.
24. MCALPINE, D. F. 2002. Pygmy and dwarf sperm whales: Kogia breviceps and K. sima. Pages 1007-1009 in W. F. Perrin, B. Würsig and J. G. M. Thewissen, eds. Encyclopedia of marine mammals. Academic Press, San Diego, CA.
25. MILINKOVITCH, M. C., R. LEDUC, R. TIEDEMANN AND A. DIZON. 2001. Applications of molecular data in cetacean taxonomy and population genetics with special emphasis on defining species boundaries. Pages 325-359 in P. G. H. Evans and J. A. Raga, eds. Marine mammals: Biology and conservation. Kluwer Academic/Plenum Publishers, New York, NY.
26. MULLIN, K. D., W. HOGGARD, C. L. RODEN, R. R. LOHOEFENER, C. M. ROGERS AND B. TAGGART. 1994. Cetaceans on the upper continental slope in the north-central Gulf of Mexico. Fishery Bulletin, U.S. 92:773-786.
27. NAGORSEN, D. 1985. Kogia simus. Mammalian Species 239:1-6.
28. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, NY.
29. NEI, M., AND F. TAJIMA. 1981. DNA polymorphism detectable by restriction endonucleases. Genetics 97:145-163.
30. PERRIN, W. F., E. D. MITCHELL AND P. J. H. VAN BREE. 1978. Historical zoogeography of tropical pelagic dolphins. Abstracts of papers. II. Congressus Theriologicus Internationalis, 20-27 June 1978, Brno. p. 73.
31. PERRIN, W. F., E. D. MITCHELL, J. G. MEAD, D. K. CALDWELL AND P. J. H. VAN BREE. 1981. Stenella clymene, a rediscovered tropical dolphin of the Atlantic. Journal of Mammalogy 62:583-598.
32. RAUN, G. G., H. D. HOESE AND F. MOSELEY. 1970. Pygmy sperm whales, genus Kogia, on the Texas coast. Texas Journal of Science 21:269-274.
33. REEVES, R. R., W. F. PERRIN, B. L. TAYLOR, C. S. BAKER AND S. L. MESNICK. 2004. Report of the workshop on shortcomings of cetacean taxonomy in relation to needs of conservation and management, April 30-May 2, 2004, La Jolla, California. NOAA-Technical Memorandum-NMFS-SWFSC-363. 94 pp.
34. RICE, D. W. 1998. Marine mammals of the world: Systematics and distribution. Special Publication No. 4, Society of Marine Mammalogy, Lawrence, KS.
35. ROSEL, P. E., A. E. DIZON AND J. E. HEYNING. 1994. Genetic analysis of sympatric morphotypes of common dolphins (genus Delphinus). Marine Biology 119:159-167.
36. ROSS, G. J. B. 1979. Records of pygmy and dwarf sperm whales, genus Kogia, from southern Africa, with biological notes and some comparisons. Annals of the Cape Provincial Museums, Natural History 11:259-327.
37. ROSS, G. J. B. 1984. The smaller cetaceans of the south east coast of southern Africa. Annals of the Cape Provincial Museums, Natural History 15:173-410.
38. SAIKI, R. K., D. H. GELFAND, S. STOFFLE, S. J. SCHARF, R. HIGUCHI, G. T. HORN, K. B. MULLIS AND H. A. ERLICH. 1988. Primer-directed amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
39. SAMBROOK, J., E. F. FRITSCH AND T. MANIATIS. 1989. Molecular Cloning: Laboratory manual. Second edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. SCHNEIDER, S., D. ROESSLI AND L. EXCOFFIER. 2000. Arlequin: A software for population genetics data analysis, ver. 2.000. Available at http://anthro.unige.ch/arlequin.
41. SWOFFORD, D. E. 1993. PAUP: Phylogenetic analysis using parsimony, Version 4.0. Sinauer Associates Inc., Publishers, Sunderland, MA.
42. WILSON, A. C., R. L. CANN, S. M. CARR, M. GEORGE, U. B. GYLLENSTEN, K. M. HELMBYCHOWSKI, R. G. HIGUCHI, S. R. PALUMBI, E. M. PRAGER, R. D. SAGE AND M. STONEKING. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnaean Society 26:375-400.
43. WINNEPENNINCKX, B., T. BACKELJAU AND R. DEWACHTER. 1993. Extraction of high molecular weight DNA from mollusks. Trends in Genetics 9:407.