1.2 Å crystal structure of the S. pneumoniae PhtA histidine triad domain a novel zinc binding fold

FEBS Letters

Volumn 579, Issue 24, 2005, Pages 5353-5360

  Riboldi Tunnicliffe, A ^a   Isaacs, N W ^a   Mitchell, T J ^a  

^a UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

PhtA; PhtB; PhtD; PhtE; Pneumococcal histidine triad protein; SAD; Zinc binding

Indexed keywords

BACTERIAL PROTEIN; PNEUMOCOCCAL HISTIDINE TRIAD A PROTEIN; UNCLASSIFIED DRUG; ZINC; HISTIDINE;

ALPHA HELIX; ARTICLE; CRYSTAL STRUCTURE; GENOMICS; GEOMETRY; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEIN STRUCTURE; STREPTOCOCCUS PNEUMONIAE; AMINO ACID SEQUENCE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; METABOLISM; MOLECULAR GENETICS; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

BACTERIA (MICROORGANISMS); PNEUMOCOCCUS; STREPTOCOCCUS PNEUMONIAE;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; HISTIDINE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; STREPTOCOCCUS PNEUMONIAE; ZINC;

EID: 25844467850     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2005.08.066     Document Type: Article

References (34)

1. D. Vitkup, E. Melamud, J. Moult, and C. Sander Completeness in structural genomics Nat. Struct. Biol. 8 2001 559 566
2. T.I. Zarembinski, L.W. Hung, H.J. Mueller-Dieckmann, K.K. Kim, H. Yokota, R. Kim, and S.H. Kim Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics Proc. Natl. Acad. Sci. USA 95 1998 15189 15193
3. K.Y. Hwang, J.H. Chung, S.H. Kim, Y.S. Han, and Y. Cho Structure-based identification of a novel NTPase from Methanococcus jannaschii Nat. Struct. Biol. 6 1999 691 696
4. M. Teplova, V. Tereshko, R. Sanishvili, A. Joachimiak, T. Bushueva, W.F. Anderson, and M. Egli The structure of the yrdC gene product from Escherichia coli reveals a new fold and suggests a role in RNA binding Prot. Sci. 9 2000 2557 2566
5. U. Schulze-Gahmen, J. Pelaschier, H. Yokota, R. Kim, and S.H. Kim Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein Proteins 50 2003 526 530
6. D. Christendat, A. Yee, A. Dharamsi, Y. Kluger, M. Gerstein, C.H. Arrowsmith, and A.M. Edwards Structural proteomics: prospects for high throughput sample preparation Prog. Biophys. Mol. Biol. 73 2000 339 345
7. A.G. Murzin Structure classification-based assessment of CASP3 predictions for the fold recognition targets Proteins Suppl. 3 1999 88 103
8. S.G. Oliver From DNA sequence to biological function Nature 379 1996 597 600
9. M. Linial, and G. Yona Methodologies for target selection in structural genomics Prog. Biophys. Mol. Biol. 73 2000 297 320
10. J.E. Adamou Identification and characterization of a novel family of pneumococcal proteins that are protective against sepsis Infect. Immun. 69 2001 949 958
11. D.J. Rigden, M.Y. Galperin, and M.J. Jedrzejas Analysis of structure and function of putative surface-exposed proteins encoded in the Streptococcus pneumoniae genome: a bioinformatics-based approach to vaccine and drug design Crit. Rev. Biochem. Mol. Biol. 38 2003 143 168
12. T.M. Wizemann Use of a whole genome approach to identify vaccine molecules affording protection against Streptococcus pneumoniae infection Infect. Immun. 69 2001 1593 1598
13. Y. Zhang, A.W. Masi, V. Barniak, K. Mountzouros, M.K. Hostetter, and B.A. Green Recombinant PhpA protein, a unique histidine motif-containing protein from Streptococcus pneumoniae, protects mice against intranasal pneumococcal challenge Infect. Immun. 69 2001 3827 3836
14. J. Hamel, N. Charland, I. Pineau, C. Ouellet, S. Rioux, D. Martin, and B.R. Brodeur Prevention of pneumococcal disease in mice immunized with conserved surface-accessible proteins Infect. Immun. 72 2004 2659 2670
15. A. Riboldi-Tunnicliffe, C.J. Bent, N.W. Isaacs, and T.J. Mitchell Expression, purification and X-ray characterization of residues 18-230 from the pneumococcal histidine triad protein A (PhtA) from Streptococcus pneumoniae Acta Crystallogr. D, Biol. Crystallogr. 60 2004 926 928
16. A. Riboldi-Tunnicliffe, and R. Hilgenfeld Cryocrystallography with oil - an old idea revived J. Appl. Cryst. 32 1999 1003 1005
17. A.G.M. Leslie, MOSFLM, Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography 26 (1992).
18. P.R. Evans (1993) in: Proceedings of CCP4 Study Weekend on Data Collection & Processing, pp. 114-122.
19. C.C.P.N. CCP4 The CCP4 suite: programs for protein crystallography Acta Crystallogr., D 50 1994 760 763
20. S. French, and K. Wilson On the treatment of negative intensity observations Acta Crystallogr., A 34 1978 517 525
21. E.d. LaFortelle, and G. Bricogne J.R.M. Sweet C.W. Carter Methods in Enzymology vol. 276 1997 Academic Press New York
22. J.P. Abrahams, and A.G.W. Leslie Methods used in the structure determination of bovine mitochondrial F1 ATPase Acta Crystallogr., D 52 1996 30 42
23. A. Perrakis, R. Morris, and V.S. Lamzin Automated protein model building combined with iterative structure refinement Nat. Struct. Biol. 6 1999 458 463
24. G.N. Murshudov, A.A. Vagin, A. Lebedev, K.S. Wilson, and E.J. Dodson Efficient anisotropic refinement of macromolecular structures using FFT Acta Crystallogr. D, Biol. Crystallogr. 55 Pt 1 1999 247 255
25. R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Cryst. 26 1993 283 291
26. G. Vriend WHAT IF: a molecular modeling and drug design program J. Mol. Graph. 8 1990 52 56 29
27. M.D. Winn, M.N. Isupov, and G.N. Murshudov Use of TLS parameters to model anisotropic displacements in macromolecular refinement Acta Crystallogr. D, Biol. Crystallogr. 57 2001 122 133
28. P.J. Kraulis MOLSCRIPT: A programk to produce both detailed and schematic plots of protein structures J. Appl. Cryst. 24 1991 946 950
29. R.M. Esnouf Further additions to MolScript version 1.4, including reading and contouring of electron-density maps Acta Crystallogr., D 55 1999 938 940
30. E.A. Merrit, and D.J. Bacon J.R.M. Sweet C.W. Carter Methods in Enzymology vol. 277 1997 Academic Press New York
31. E.M. Panina, A.A. Mironov, and M.S. Gelfand Comparative genomics of bacterial zinc regulons: enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins Proc. Natl. Acad. Sci. USA 100 2003 9912 9917
32. B.W. Matthews Solvent content of protein crystals J. Mol. Biol. 33 1968 491 497
33. H.M. Berman, T.N. Bhat, P.E. Bourne, Z. Feng, G. Gilliland, H. Weissig, and J. Westbrook The Protein Data Bank and the challenge of structural genomics Nat. Struct. Biol. 7 Suppl 2000 957 959
34. L. Holm, and C. Sander Protein structure comparison by alignment of distance matrices J. Mol. Biol. 233 1993 123 138