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Volumn 6, Issue , 2005, Pages

Comparison of theoretical proteomes: Identification of COGs with conserved and variable pI within the multimodal pI distribution

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEOME;

EID: 25444480245     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-116     Document Type: Article
Times cited : (32)

References (22)
  • 2
    • 0023724979 scopus 로고
    • Isoelectric focusing of basic proteins: The problem of oxidation of cysteines
    • Altland K, Becher P, Rossmann U, Bjellqvist B: Isoelectric focusing of basic proteins: the problem of oxidation of cysteines. Electrophoresis 1988, 9(9): 474-85
    • (1988) Electrophoresis , vol.9 , Issue.9 , pp. 474-485
    • Altland, K.1    Becher, P.2    Rossmann, U.3    Bjellqvist, B.4
  • 4
    • 0034744173 scopus 로고    scopus 로고
    • Whole proteome isoelectric point values correlate with subcellular localization of proteins for organisms within the three domains of life
    • Schwartz R, Ting CS, King J: Whole proteome isoelectric point values correlate with subcellular localization of proteins for organisms within the three domains of life. Gen. Res. 2001, 11, 703-709
    • (2001) Gen. Res. , vol.11 , pp. 703-709
    • Schwartz, R.1    Ting, C.S.2    King, J.3
  • 5
    • 1842476119 scopus 로고    scopus 로고
    • The modal distribution of protein isoelectric points reflects amino acid properties rather than sequence evolution
    • Weiller GF, Caraux G, Sylvester N: The modal distribution of protein isoelectric points reflects amino acid properties rather than sequence evolution. Proteomics. 2004, 4(4): 943-9
    • (2004) Proteomics , vol.4 , Issue.4 , pp. 943-949
    • Weiller, G.F.1    Caraux, G.2    Sylvester, N.3
  • 6
    • 2942567744 scopus 로고    scopus 로고
    • Global analysis of predicted proteomes: Functional adaptation of physical properties
    • Knight CG, Kassen R, Hebestreit H, Rainey PB.: Global analysis of predicted proteomes: functional adaptation of physical properties. Proc Natl Acad Sci U S A. 2004, 101(22):8390-5
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , Issue.22 , pp. 8390-8395
    • Knight, C.G.1    Kassen, R.2    Hebestreit, H.3    Rainey, P.B.4
  • 7
    • 0037019808 scopus 로고    scopus 로고
    • Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: A global picture with correspondence analysis
    • Tekaia F, Yeramian E, Dujon B: Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis. Gene. 2002, 297(1-2):51-60
    • (2002) Gene , vol.297 , Issue.1 , pp. 251-260
    • Tekaia, F.1    Yeramian, E.2    Dujon, B.3
  • 8
    • 2942625668 scopus 로고    scopus 로고
    • Environmental signatures in proteome properties
    • Brocchieri L: Environmental signatures in proteome properties. Proc Natl Acad Sci. 2004, 101(22): 8257-8258
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , Issue.22 , pp. 8257-8258
    • Brocchieri, L.1
  • 9
    • 0034767491 scopus 로고    scopus 로고
    • Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
    • Kennedy SP, Ng WV, Salzberg SL, Hood L, DasSarma S.: Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome Res. 2001, 11(10):1641-50
    • (2001) Genome Res. , vol.11 , Issue.10 , pp. 1641-1650
    • Kennedy, S.P.1    Ng, W.V.2    Salzberg, S.L.3    Hood, L.4    DasSarma, S.5
  • 10
    • 0036593492 scopus 로고    scopus 로고
    • Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes
    • Karlin S, Brocchieri L, Trent J, Blaisdell BE, Mrazek J.: Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes. Theor Popul Biol. 2002 61(4):367-90
    • (2002) Theor. Popul. Biol. , vol.61 , Issue.4 , pp. 367-390
    • Karlin, S.1    Brocchieri, L.2    Trent, J.3    Blaisdell, B.E.4    Mrazek, J.5
  • 11
    • 0034855858 scopus 로고    scopus 로고
    • How do thermophilic proteins deal with heat?
    • Kumar S, Nussinov R.: How do thermophilic proteins deal with heat? Cell Mol Life Sci. 2001, 58(9):1216-33
    • (2001) Cell Mol. Life Sci. , vol.58 , Issue.9 , pp. 1216-1233
    • Kumar, S.1    Nussinov, R.2
  • 12
    • 0030660581 scopus 로고    scopus 로고
    • A Genomics Perspective on Protein Families
    • Tatusov RL, Koonin EV, Lipman DJ: A Genomics Perspective on Protein Families. Science 1997, 278(5338): 631-7
    • (1997) Science , vol.278 , Issue.5338 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 15
    • 25444475163 scopus 로고    scopus 로고
    • Website title [ftp://ftp.ncbi.nih.gov/pub/COG/ and ftp://ftp.ncbi.nih.gov/genomes]
    • Website title [ftp://ftp.ncbi.nih.gov/pub/COG/ and ftp://ftp.ncbi.nih.gov/genomes].
  • 16
    • 25444445470 scopus 로고    scopus 로고
    • Website title
    • Website title [http://www.expasy.org/tools/pi_tool.html].
  • 17
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22(22): 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 18
    • 0000122573 scopus 로고
    • PHYLIP: Phylogeny inference package
    • Felsenstein J: PHYLIP: Phylogeny inference package. Cladistics 1989, 5: 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 20
    • 84861604521 scopus 로고
    • Multiple Comparisons Using Rank Sums
    • Dunn DJ: Multiple Comparisons Using Rank Sums. Technometrics, 1964, 5:241-252
    • (1964) Technometrics , vol.5 , pp. 241-252
    • Dunn, D.J.1
  • 21
    • 0028568176 scopus 로고
    • TopPred II: An improved software for membrane protein structure predictions
    • Claros MG, von Heijne G: TopPred II: an improved software for membrane protein structure predictions. Comput. Appl. Biosci. 1994
    • (1994) Comput. Appl. Biosci.
    • Claros, M.G.1    von Heijne, G.2
  • 22
    • 25444479283 scopus 로고    scopus 로고
    • Website title
    • Website title [http://www.ncbi.nlm.nih.gov/COG/old/ COGhelp.html#function_code].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.