Molecular and genetic analyses of geographic variation in isolates of Phoma macrostoma used for biological weed control

Mycologia

Volumn 97, Issue 3, 2005, Pages 612-620

  Zhou, Lecong ^a   Bailey, K L ^a   Chen, C Y ^a   Keri, Mario ^a  

^a SASKATOON RESEARCH CENTRE   (Canada)

Author keywords

Biocontrol; Genetic variation; Mating; PFGE; Phoma macrostoma; RAPD

Indexed keywords

BIOLOGICAL CONTROL; GENETIC ANALYSIS; GENETIC VARIATION; GEOGRAPHICAL VARIATION; MOLECULAR ANALYSIS; WEED CONTROL;

CANADA; EASTERN HEMISPHERE; EURASIA; EUROPE; NORTH AMERICA; WESTERN HEMISPHERE; WORLD;

FUNGI; PHOMA; PHOMA MACROSTOMA;

EID: 25444479111     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.1080/15572536.2006.11832792     Document Type: Article

References (47)

1. Arisan-Atac I, Heidenreich E, Kubicek CP. 1995. Randomly amplified polymorphic DNA fingerprinting identifies subgroups of Trichoderma viride and other Trichoderma sp. capable of chestnut blight control. FEMS Microbiol Lett 126:249-255.
2. Bailey KL, Derby J. 2001. Fungal isolates and biological control compositions for the control of weeds. US Patent Application Serial No. 60/294,475. Filed 20 May 2001.
3. Benzécri JP. 1973. L'analyse des données. Tome I. La taxonomie. Paris, France: Dunod.
4. Boerema GH, de Gruyter J, Noordeloos ME, Hamers MEC. 2004. Phoma identification manual: differentiation of specific and infra-specific taxa in culture. Wallingford, UK: CABI Publishing.
5. Chang TT, Yang WW, Wang WY. 1996. Use of random amplified polymorphic DNA markers for the detection of genetic variation in Phytophthora cinnamomi in Taiwan. Bot Bull Acad Sin 37:165-171.
6. Charudattan R. 1988. Inundative control of weeds with indigenous fungal pathogens. In: Burge MN, ed. Fungi in biological control systems. New York: Manchester University Press. 269 p.
7. Chen CY, Séguin-Swartz G. 1999. Reaction of wild crucifers to Leptosphaeria maculans, the causal agent of blackleg of crucifers. Can J Plant Pathol 21:361-367.
8. _, Plummer KM, Howlett BJ. 1996. Ability of a Leptosphaeria maculans isolate to form stem cankers on Indian mustard segregates as a single locus. Eur J Plant Pathol 102:349-352.
9. Cook RJ, Bruckart WL, Coulson JR, Goettel MS, Humber RA, Lumsden RD, Maddox JV, McManus ML, Moore L, Meyer SF, Quimby PC Jr, Stack JP, Vaughn JL. 1996. Safety of microorganisms intended for pest and plant disease control: a framework for scientific evaluation. Biol Control 7:333-351.
10. Cozijnsen AJ, Popa KM, Purwantara A, Rolls BD, Howlett BJ. 2000. Genome analysis of the plant pathogenic ascomycete Leptosphaeria maculans; mapping mating type and host-specificity loci. Mol Plant Pathol 1:293-302.
11. Efron B, Gong G. 1983. A leisurely look at the bootstrap, the jacknife, and cross-validation. Am Stat 37:36-48.
12. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
13. Gosselin L, Jobidon R, Bernier L. 1996. Assessment of genetic variation with Chondrostereum purpureum from Québec by random amplified polymorphic DNA analysis. Mycol Res 100:151-158.
14. Hassan AK, Schulz C, Sacristan MD, Wöstemeyer J. 1991. Biochemical and molecular tools for the differentiation of aggressive and non-aggressive isolates of the oilseed rape pathogen, Phoma lingam. J Phytopathol 131:120-136.
15. Hintz WE, Becker EM, Shamoun SF. 2001. Development of genetic markers for risk assessment of biological control agents. Can J Plant Pathol 23:13-18.
16. Howlett BJ. 1997. Genome analysis of the fungal plant pathogen, Leptosphaeria maculans using pulsed field gel electrophoresis. Electrophoresis 18:1544-1547.
17. Johnson RD, Lewis BG. 1990, DNA polymorphism in Leptosphaeria maculans. Physiol Mol Plant Pathol 37:417-424.
18. Koch E, Song K, Osborn TC, Williams PH. 1991. Relationship between pathogenicity and phylogeny based on restriction fragment length polymorphism in Leptosphaeria maculans. Mol Plant-Microbe Interact 4:341-349.
19. Kuusk A-K, Happstadius I, Zhou L, Steventon LA, Griese H, Dixelius C. 2002. Presence of Leptosphaeria maculans group A and group B isolates in Sweden. J Phytopathol 150:349-356.
20. Lim L, Howlett BJ. 1994. Linear plasmids, pLm9 and pLm10, can be isolated from the phytopathogenic ascomycete Leptosphaeria maculans by pulsed-field gel electrophoresis. Curr Genet 26:276-280.
21. McDermott JM, Brandle U, Dutly F, Haemmerli UA, Keller S, Muller KE, Wolfe MS. 1994. Genetic variation in powdery mildew of barley: development of RAPD, SCAR, and VNTR markers. Phytopathology 84:1316-1321.
22. McGee DC, Petrie GA. 1978. Variability of Leptosphaeria maculans in relation to blackleg of oilseed rape. Phytopathology 68:625-630.
23. Mengistu A, Hill CB, Williams PH. 1995. A toothpick method for mating Leptosphaeria maculans, the causal agent of blackleg of crucifers. Plant Dis 79:755-756.
24. _, Rimmer SR, Williams PH. 1993. Protocols for in vitro sporulation, ascospore release, sexual mating and fertility in crosses of Leptosphaeria maculans. Plant Dis 77:538-540.
25. Morales VM, Séguin-Swartz G, Taylor JL. 1993. Chromosome size polymorphism in Leptosphaeria maculans. Phytopathology 83:503-509.
26. Moreno-Rico O, Séguin-Swartz G, Nettleton JA, Luna-Ruiz JJ, Frias-Treviño AG, Romero-Cova S. 2002. Mexican isolates of Leptosphaeria maculans belong to the aggressive strain of the fungus. Can J Plant Pathol 24:69-73.
27. Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273.
28. Nicholson P, Rezanoor HN. 1994. The use of random amplified polymorphic DNA to identify pathotype and detect variation in Pseudocercosporella herpotrichoides. Mycol Res 98:13-21.
29. Pest Management Regulatory Agency 2001. Regulatory Directive DIR 2002-02 Guidelines for the registration of microbial pest control agents and products. Website: www.hc-sc.gc.ca
30. Petrie GA. 1969. Variability of Leptosphaeria maculans (Desm.) Ces. & de Not., the cause of blackleg of rape [Doctoral thesis]. Saskatoon, Saskatchewan: University of Saskatchewan.
31. Plummer KM, Howlett BJ. 1993. Major chromosomal length polymorphisms are evident after meiosis in the phytopathogenic fungus Leptosphaeria maculans. Curr Genet 24:107-113.
32. _, Howlett BJ. 1995. Inheritance of chromosomal length polymorphisms in the ascomycete Leptosphaeria maculans. Mol Gen Genet 247:416-422.
33. Ramsfield TD, Becker EM, Rathlef SM, Tang Y, Vrain TC, Shamoun SF, Hintz WE. 1996. Geographic variation of Chondrostereum purpureum detected by polymorphisms in the ribosomal DNA. Can J Bot 74:1919-1929.
34. _, Shamoun SF, Punja ZK, Hintz WE. 1999. Variation in mitochondrial DNA of the potential biological control agent Chondrostereum purpureum. Can J Bot 77:1490-1498.
35. Shamoun SF, Wall RE. 1996. Characterization of Canadian isolates of Chondrostereum purpureum by protein content, APIZYM and isozyme analysis. Eur J For Pathol 26:333-342.
36. Slatkin M. 1987. Gene flow and the geographic structure of natural populations. Science 236:787-792.
37. Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. 1996. Phylogenetic inference. In: Hillis DM, Moritz C, Mable BK, eds. Molecular Systematics. Sinauer Associates, Sunderland, USA. p 407-514.
38. Taylor JL, Pedras MSC, Morales VM. 1995. Horizontal transfer in the phytopathogenic fungal genus Leptosphaeria and host-range expansion. Trends Biotechnol 3:202-206.
39. TeBeest DO, Yang XB, Cisar CR. 1992. The status of biological control of weeds with fungal pathogens. Annu Rev Phytopathol 30:637-657.
40. Templeton GE. 1992. Regulations and guidelines: critical issues in biological control. In: Proceedings of the USDA-CSRS National Workshop. 10-12 Jun 1991, Vienna, Virginia. p 63.
41. _, TeBeest DO, Smith RJJr. 1979. Biological weed control with mycoherbicides. Annu Rev Phytopathol 17:301-310.
42. Teng PS, Yang XB. 1993. Biological impact and risk assessment in plant pathology. Annu Rev Phytopathol 31:495-521.
43. Van Acker RC, Thomas AG, Leeson JY, Knezevic SZ, Frick BL. 2000. Comparison of weed communities in Manitoba ecoregions and crops. Can J Plant Sci 80:963-972.
44. Van de Peer Y, de Wachter R. 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Applic Biosci 10:569-570.
45. Wapshere AJ. 1974. A strategy for evaluating the safety of organisms for biological weed control. Ann Appl Biol 77:201-211.
46. Zhou L, Bailey KL, Derby J. 2004. Plant colonization and environmental fate of the biocontrol fungus, Phoma macrostoma. Bio Control 20:634-644.
47. Zimand G, Valinsky L, Elad Y, Chet I, Manulis S. 1994. Use of RAPD procedure for the identification of Trichoderma strains. Mycol Res 98:531-534.