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Volumn 6, Issue , 2005, Pages

Thesaurus-based disambiguation of gene symbols

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATICALLY GENERATED; BIOLOGICAL LITERATURES; HUMAN GENES; MULTIPLE GENES; OVERALL ACCURACIES; TEST SETS; TEXT MINING; TRAINING DATA;

EID: 25444465132     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-149     Document Type: Article
Times cited : (40)

References (41)
  • 1
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Jenssen TK, Laegreid A, Komorowski J, Hovig E: A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 2001, 28:21-28.
    • (2001) Nat. Genet. , vol.28 , pp. 21-28
    • Jenssen, T.K.1    Laegreid, A.2    Komorowski, J.3    Hovig, E.4
  • 4
    • 0035236048 scopus 로고    scopus 로고
    • GENIES: A natural-language processing system for the extraction of molecular pathways from journal articles
    • Friedman C, Kra P, Yu H, Krauthammer M, Rzhetsky A: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 2001, 17:S74-82.
    • (2001) Bioinformatics , vol.17
    • Friedman, C.1    Kra, P.2    Yu, H.3    Krauthammer, M.4    Rzhetsky, A.5
  • 6
    • 0034734040 scopus 로고    scopus 로고
    • Automated extraction of information in molecular biology
    • Andrade MA, Bork P: Automated extraction of information in molecular biology. FEBS Lett 2000, 476:12-17.
    • (2000) FEBS Lett. , vol.476 , pp. 12-17
    • Andrade, M.A.1    Bork, P.2
  • 7
    • 0742321913 scopus 로고    scopus 로고
    • Mining the biomedical literature in the genomic era: An overview
    • Shatkay H, Feldman R: Mining the biomedical literature in the genomic era: an overview. J Comput Biol 2003, 10:821-855.
    • (2003) J. Comput. Biol. , vol.10 , pp. 821-855
    • Shatkay, H.1    Feldman, R.2
  • 8
    • 1342330525 scopus 로고    scopus 로고
    • Knowledge discovery by automated identification and ranking of implicit relationships
    • Wren JD, Bekeredjian R, Stewart JA, Shohet RV, Garner HR: Knowledge discovery by automated identification and ranking of implicit relationships. Bioinformatics 2004, 20:389-398.
    • (2004) Bioinformatics , vol.20 , pp. 389-398
    • Wren, J.D.1    Bekeredjian, R.2    Stewart, J.A.3    Shohet, R.V.4    Garner, H.R.5
  • 9
    • 3042786293 scopus 로고    scopus 로고
    • A gene network for navigating the literature
    • Hoffmann R, Valencia A: A gene network for navigating the literature. Nat Genet 2004, 36:664.
    • (2004) Nat. Genet. , vol.36 , pp. 664
    • Hoffmann, R.1    Valencia, A.2
  • 10
    • 0037187568 scopus 로고    scopus 로고
    • Conceptual biology: Unear thing the gems
    • Blagosklonny MV, Pardee AB: Conceptual biology: unear thing the gems. Nature 2002, 416:373.
    • (2002) Nature , vol.416 , pp. 373
    • Blagosklonny, M.V.1    Pardee, A.B.2
  • 11
    • 0035031110 scopus 로고    scopus 로고
    • Linking microarray data to the literature
    • Masys DR: Linking microarray data to the literature. Nat Genet 2001, 28:9-10.
    • (2001) Nat. Genet. , vol.28 , pp. 9-10
    • Masys, D.R.1
  • 12
    • 84874667542 scopus 로고    scopus 로고
    • Obstacles of nomenclature
    • Obstacles of nomenclature. Nature 1997, 389:1.
    • (1997) Nature , vol.389 , pp. 1
  • 16
    • 13444256580 scopus 로고    scopus 로고
    • Gene name ambiguity of eukaryotic nomenclatures
    • Chen L, Liu H, Friedman C: Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics 2005, 21:248-256.
    • (2005) Bioinformatics , vol.21 , pp. 248-256
    • Chen, L.1    Liu, H.2    Friedman, C.3
  • 17
    • 0035564886 scopus 로고    scopus 로고
    • Disambiguating ambiguous biomedical terms in biomedical narrative text: An unsupervised method
    • Liu H, Lussier YA, Friedman C: Disambiguating ambiguous biomedical terms in biomedical narrative text: an unsupervised method. J Biomed Inform 2001, 34:249-261.
    • (2001) J. Biomed. Inform. , vol.34 , pp. 249-261
    • Liu, H.1    Lussier, Y.A.2    Friedman, C.3
  • 20
    • 0002487107 scopus 로고    scopus 로고
    • Introduction to the special issue on word sense disambiguation: The state of the art
    • Ide N, Věronis J: Introduction to the special issue on word sense disambiguation: the state of the art. Computational Linguistics 1998, 24:1-40.
    • (1998) Computational Linguistics , vol.24 , pp. 1-40
    • Ide, N.1    Věronis, J.2
  • 21
    • 17944387888 scopus 로고    scopus 로고
    • The inter action of knowledge sources in word sense disambiguation
    • Stevenson M, Wilks Y: The inter action of knowledge sources in word sense disambiguation. Computational Linguistics 2001, 27:321-349.
    • (2001) Computational Linguistics , vol.27 , pp. 321-349
    • Stevenson, M.1    Wilks, Y.2
  • 22
    • 0035224502 scopus 로고    scopus 로고
    • Disambiguating proteins, genes, and RNA in text: A machine learning approach
    • Hatzivassiloglou V, Duboue PA, Rzhetsky A: Disambiguating proteins, genes, and RNA in text: a machine learning approach. Bioinformatics 2001, 17:S97-106.
    • (2001) Bioinformatics , vol.17
    • Hatzivassiloglou, V.1    Duboue, P.A.2    Rzhetsky, A.3
  • 23
    • 84925720272 scopus 로고    scopus 로고
    • New techniques for disambiguation in natural language and their application to biological text
    • Ginter F, Boberg J, Järvinen J, Salakosi T: New techniques for disambiguation in natural language and their application to biological text. J Machine Learning Res 2004, 5:605-621.
    • (2004) J. Machine Learning Res. , vol.5 , pp. 605-621
    • Ginter, F.1    Boberg, J.2    Järvinen, J.3    Salakosi, T.4
  • 24
    • 0036828375 scopus 로고    scopus 로고
    • Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS
    • Liu H, Johnson SB, Friedman C: Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS. J Am Med Inform Assoc 2002, 9:621-636.
    • (2002) J. Am. Med. Inform. Assoc. , vol.9 , pp. 621-636
    • Liu, H.1    Johnson, S.B.2    Friedman, C.3
  • 25
    • 3042723139 scopus 로고    scopus 로고
    • A multi-aspect comparison study of supervised word sense disambiguation
    • Liu H, Teller V, Friedman C: A multi-aspect comparison study of supervised word sense disambiguation. J Am Med Inform Assoc 2004, 11:320-331.
    • (2004) J. Am. Med. Inform. Assoc. , vol.11 , pp. 320-331
    • Liu, H.1    Teller, V.2    Friedman, C.3
  • 27
    • 0028230073 scopus 로고
    • Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches
    • Lowe HJ, Barnett GO: Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches. Jama 1994, 271:1103-1108.
    • (1994) Jama , vol.271 , pp. 1103-1108
    • Lowe, H.J.1    Barnett, G.O.2
  • 28
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt KD, Maglott DR: RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 2001, 29:137-140.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 29
    • 0347756650 scopus 로고    scopus 로고
    • The Molecular Biology Database Collection: 2004 update
    • Database issue
    • Galperin MY: The Molecular Biology Database Collection: 2004 update. Nucleic Acids Res 2004, 32 Database issue:D3-22.
    • (2004) Nucleic Acids Res. , vol.32
    • Galperin, M.Y.1
  • 30
    • 0041627757 scopus 로고    scopus 로고
    • A simple algorithm for identifying abbreviation definitions in biomedical text
    • Schwartz AS, Hearst MA: A simple algorithm for identifying abbreviation definitions in biomedical text. Pac Symp Biocomput 2003:451-462.
    • (2003) Pac. Symp. Biocomput. , pp. 451-462
    • Schwartz, A.S.1    Hearst, M.A.2
  • 32
    • 0003653039 scopus 로고
    • Introduction to modern information retrieval
    • New York: McGraw-Hill
    • Salton G: Introduction to modern information retrieval. New York: McGraw-Hill; 1983.
    • (1983)
    • Salton, G.1
  • 34
    • 8444226720 scopus 로고    scopus 로고
    • Term identification in the biomedical literature
    • Krauthammer M, Nenadic G: Term identification in the biomedical literature. J Biomed Inform 2004, 37:512-526.
    • (2004) J. Biomed. Inform. , vol.37 , pp. 512-526
    • Krauthammer, M.1    Nenadic, G.2
  • 35
    • 84874654777 scopus 로고    scopus 로고
    • Genew download
    • Genew download [http://www.gene.ucl.ac.uk/public-files/nomen/nomeids.txt].
  • 36
    • 84874656044 scopus 로고    scopus 로고
    • GDB download
    • GDB download [http://gdbwww.gdb.org/gdbreports/GeneByAlpha.tab].
  • 37
    • 84874664351 scopus 로고    scopus 로고
    • LocusLink download [ftp://ftp.ncbi.nih.gov/refseq/LocusLink /LL™pl.gz]
    • LocusLink download [ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL™pl.gz].
  • 38
    • 84874658518 scopus 로고    scopus 로고
    • OMIM download [ftp://ftp.ncbi.nih.gov/repository/OMIM/genemap]
    • OMIM download [ftp://ftp.ncbi.nih.gov/repository/OMIM/genemap].
  • 39
    • 84874663891 scopus 로고    scopus 로고
    • Swiss-Prot download [ftp://us.expasy.org/databases/swissprot/special↘lections /human.seq]
    • Swiss-Prot download [ftp://us.expasy.org/databases/swissprot/special↘lections /human.seq].
  • 40
    • 84874650894 scopus 로고    scopus 로고
    • UMLS lexical tools
    • UMLS lexical tools [http://umlslex.nlm.nih.gov/lvg/current/].
  • 41
    • 0004011404 scopus 로고    scopus 로고
    • Information retrieval: A health and biomedical perspective
    • New York: Springer-Verlag
    • Hersh WR: Information retrieval: a health and biomedical perspective. New York: Springer-Verlag; 2003.
    • (2003)
    • Hersh, W.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.