An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 39, 2005, Pages 13933-13938

  Budovskaya, Yelena V ^a   Stephan, Joseph S ^a   Deminoff, Stephen J ^a   Herman, Paul K ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

Ras proteins; Sequence conservation; Stationary phase

Indexed keywords

CYCLIC AMP DEPENDENT PROTEIN KINASE; PROTEOME;

ARTICLE; AUTOPHAGY; ENZYME PHOSPHORYLATION; ENZYME SUBSTRATE; EUKARYOTIC CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN MOTIF; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION;

AUTOPHAGY; CYCLIC AMP-DEPENDENT PROTEIN KINASES; EVOLUTION, MOLECULAR; PHOSPHORYLATION; PROTEIN KINASES; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SUBSTRATE SPECIFICITY;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 25444459688     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0501046102     Document Type: Article

References (53)

1. Cohen, P. (2002) Nat. Rev. Drug Discov. 1, 309-315.
2. Hunter, T. (2000) Cell 100, 113-127.
3. Hunter, T. (1987) Cell 50, 823-829.
4. Manning, G., Whyte, D. B., Martinez, R., Hunter, T. & Sudarsanam, S. (2002) Science 298, 1912-1934.
5. Manning, B. D. & Cantley, L. C. (2002) Sci. STKE 162, 1-4.
6. Taylor, S. S., Yang, J., Wu, J., Haste, N. M., Radzio-Andzelm, E. & Anand, G. (2004) Biochim. Biophys. Acta 1697, 259-269.
7. Taylor, S. S., Buechler, J. A. & Yonemoto, W. (1990) Annu. Rev. Biochem. 59, 971-1005.
8. Broach, J. R. (1991) Trends Genet. 7, 28-33.
9. Herman, P. K. (2002) Curr. Opin. Microbiol. 5, 602-607.
10. Thevelein, J. M. & de Winde, J. H. (1999) Mol. Microbiol. 33, 904-918.
11. Suzuki, N., Choe, H. R., Nishida, Y., Yamawaki-Kataoka, Y., Ohnishi, S., Tamaoki, T. & Kataoka, T. (1990) Proc. Natl. Acad. Sci. USA 87, 8711-8715.
12. Field, J., Xu, H. P., Michaeli, T., Ballester, R., Sass, P., Wigler, M. & Colicelli, J. (1990) Science 247, 464-467.
13. Toda, T., Cameron, S., Sass, P., Zoller, M. & Wigler, M. (1987) Cell 50, 277-287.
14. Cliften, P. F., Hillier, L. W., Fulton, L., Graves, T., Miner, T., Gish, W. R., Waterston, R. H. & Johnston, M. (2001) Genome Res. 11, 1175-1186.
15. Tagle, D. A., Koop, B. F., Goodman, M., Slightom, J. L., Hess, D. L. & Jones, R. T. (1988) J. Mol. Biol. 203, 439-455.
16. Hardison, R. C., Oeltjen, J. & Miller, W. (1997) Genome Res. 7, 959-966.
17. Cliften, P., Sudarsanam, P., Desikan, A., Fulton, L., Fulton, B., Majors, J., Waterston, R., Cohen, B. A. & Johnston, M. (2003) Science 301, 71-76.
18. Rubin, G. M., Yandell, M. D., Wortman, J. R., Gabor Miklos, G. L., Nelson, C. R., Hariharan, I. K., Fortini, M. E., Li, P. W., Apweiler, R., Fleischmann, W., et al. (2000) Science 287, 2204-2215.
19. Denis, C. L., Kemp, B. E. & Zoller, M. J. (1991) J. Biol. Chem. 266, 17932-17935.
20. Sonayang, Z., Blechner, S., Hoagland, N., Hoekstra, M. F., Piwnica-Worms, H. & Cantley, L. C. (1994) Curr. Biol. 4, 973-982.
21. Tegge, W., Frank, R., Hofmann, F. & Dostmann, W. R. (1995) Biochemistry 34, 10569-10577.
22. Shabb, J. B. (2001) Chem. Rev. 101, 2381-2411.
23. Smith, C. M., Radzio-Andzelm, E., Madhusudan, Akamine, P. & Taylor, S. S. (1999) Prog. Biophys. Mol. Biol. 71, 313-341.
24. Noda, T., Matsuura, A., Wada, Y. & Ohsumi, Y. (1995) Biochem. Biophys. Res. Commun. 210, 126-132.
25. Budovskaya, Y. V., Stephan, J. S., Reggiori, F., Klionsky, D. J. & Herman, P. K. (2004) J. Biol. Chem. 279, 20663-20671.
26. Zhu, H., Bilgin, M., Bangham, R., Hall, D., Casamayor, A., Bertone, P., Lan, N., Jansen, R., Bidlingmaier, S., Houfek, T., et al. (2001) Science 293, 2101-2105.
27. Chang, Y. W., Howard, S. C. & Herman, P. K. (2004) Mol. Cell 15, 107-116.
28. Budovskaya, Y. V., Hama, H., DeWald, D. B. & Herman, P. K. (2002) J. Biol. Chem. 277, 287-294.
29. Gerhardt, B., Kordas, T. J., Thompson, C. M., Patel, P. & Vida, T. (1998) J. Biol. Chem. 273, 15818-15829.
30. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1995) Current Protocols in Molecular Biology (Wiley, New York).
31. Kunkel, T. A. (1985) Proc. Natl. Acad. Sci. USA 82, 488-492.
32. Herman, P. K., Stack, J. H. & Emr, S. D. (1991) EMBO J. 10, 4049-4060.
33. Reinders, A., Burckert, N., Boller, T., Wiemken, A. & De Virgilio, C. (1998) Genes Dev. 12, 2943-2955.
34. Kim, J., Huang, W. F., Stromhaug, P. E. & Klionsky, D. J. (2002) J. Biol. Chem. 277, 763-773.
35. Reggiori, F., Tucker, K. A., Stromhaug, P. E. & Klionsky, D. J. (2004) Dev. Cell 6, 79-90.
36. Barnett, J. A. (1992) Yeast 8, 1-23.
37. Rocha, C. R., Schroppel, K., Harcus, D., Mardi, A., Dignard, D., Taylor, B. N., Thomas, D. Y., Whiteway, M. & Leberer, E. (2001) Mol. Biol. Cell 12, 3631-3643,
38. Leberer, E., Harcus, D., Dignard, D., Johnson, L., Ushinsky, S., Thomas, D. Y. & Schroppel, K. (2001) Mol. Microbiol. 42, 673-687.
39. Kuret, J., Johnson, K. E., Nicolette, C. & Zoller, M. J. (1988) J. Biol. Chem. 263, 9149-9154.
40. Kim, K. H. & Carman, G. M. (1999) J. Biol. Chem. 274, 9531-9538.
41. Gorner, W., Durchschlag, E., Wolf, J., Brown, E. L., Ammerer, G., Ruis, H. & Schuller, C. (2002) EMBO J. 21, 135-144.
42. Garrett, S., Menold, M. M. & Broach, J. R. (1991) Mol. Cell. Biol. 11, 4045-4052.
43. Noda, T., Suzuki, K. & Ohsumi, Y. (2002) Trends Cell Biol. 12, 231-235.
44. Reggiori, F. & Klionsky, D. J. (2002) Eukaryot. Cell 1, 11-21.
45. Matsuura, A., Tsukada, M., Wada, Y. & Ohsumi, Y. (1997) Gene 192, 245-250.
46. Suzuki, K., Kirisako, T., Kamada, Y., Mizushima, N., Noda, T. & Ohsumi, Y. (2001) EMBO J. 20, 5971-5981.
47. Russell, M., Bradshaw-Rouse, J., Markwardt, D. & Heideman, W. (1993) Mol. Biol. Cell 4, 757-765.
48. Tucker, K. A., Reggiori, F., Dunn, W. A., Jr. & Klionsky, D. J. (2003) J. Biol. Chem. 278, 48445-48452.
49. Heckman, D. S., Geiser, D. M., Eidell, B. R., Stauffer, R. L., Kardos, N. L. & Hedges, S. B. (2001) Science 293, 1129-1133.
50. Jorgensen, P., Rupes, I., Sharom, J. R., Schneper, L. Broach, J. R. & Tyers, M. (2004) Genes Dev. 18, 2491-2505.
51. Martin, D. E., Soulard, A. & Hall, M. N. (2004) Cell 119, 969-979.
52. Tsukada, M. & Ohsumi, Y. (1993) FEBS Lett. 333, 169-174.
53. Guan, J., Stromhaug, P. E., George, M. D., Habibzadegah-Tari, P., Bevan, A., Dunn, W. A., Jr. & Klionsky, D. J. (2001) Mol. Biol. Cell 12, 3821-3838.