Proton-mediated dynamics of the alkaline conformational transition of yeast iso-1-cytochrome c

Journal of the American Chemical Society

Volumn 126, Issue 21, 2004, Pages 6751-6758

  Martinez, Robert E ^a   Bowler, Bruce E ^a  

^a UNIVERSITY OF DENVER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; IONIZATION; PH EFFECTS; PROTEINS; REACTION KINETICS;

ALKALINE CONFORMATIONAL TRANSITIONS; PROTON-MEDIATED DYNAMICS;

ORGANIC COMPOUNDS;

CYTOCHROME C; HISTIDINE; ISOCYTOCHROME C1; LYSINE; METHIONINE; PROTON; UNCLASSIFIED DRUG;

ALKALINITY; ARTICLE; CONFORMATIONAL TRANSITION; IONIZATION; KINETICS; MOLECULAR DYNAMICS; NONHUMAN; PH; PROTEIN FOLDING; YEAST;

AMINO ACID SUBSTITUTION; CYTOCHROMES C; HISTIDINE; HYDROGEN-ION CONCENTRATION; ISOENZYMES; KINETICS; LYSINE; METHIONINE; PROTEIN CONFORMATION; PROTONS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SPECTROPHOTOMETRY;

EID: 2542585318     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0494454     Document Type: Article

References (36)

1. Wilson, M. T.; Greenwood, C. In Cytochrome c: A Multidisciplinary Approach; Scott, R. A., Mauk, A. G., Eds; University Science Books: Sausalito, CA, 1996; pp 611-634.
2. (a) Ferrer, J. C.; Guillemette, J. G.; Bogumil, R.; Inglis, S. C.; Smith, M.; Mauk, A. G. J. Am. Chem. Soc. 1993, 115, 7507-7508.
3. (b) Rosell, F. I.; Ferrer, J. C.; Mauk, A. G. J. Am. Chem. Soc. 1998, 120, 11234-11245.
4. Assfalg, M.; Bertini, I.; Dolfi, A.; Turano, P.; Mauk, A. G.; Rosell, F. I.; Gray, H. B. J. Am. Chem. Soc. 2003, 125, 2913-2922.
5. (a) Davis, L. A.; Schejter, A.; Hess, G. P. J. Biol. Chem. 1974, 249, 2624-2632.
6. (b) Stellwagen, E.; Babul, J.; Wilgus, H. Biochim. Biophys. Acta 1976, 405, 115-121.
7. (c) Kihara, H.; Saigo, S.; Nakatani, H.; Hiromi, K.; Ikeda-Saito, M.; Iizuka, T. Biochim. Biophys. Acta 1976, 430, 225-243.
8. (d) Hasumi, H. Biochim. Biophys. Acta 1980, 626, 265-276.
9. (e) Saigo, S. Biochim. Biophys. Acta 1981, 669, 13-20.
10. (a) Pearce, L. L.; Gärtner, A. L.; Smith, M.; Mauk, A. G. Biochemistry 1989, 28, 3152-3156.
11. (b) Rosell, F. I.; Harris, T. R.; Hildebrand, D. P.; Döpner, S.; Hildebrandt, P.; Mauk, A. G. Biochemistry 2000, 39, 9047-9054.
12. (c) Hoang, L.; Maity, H.; Krishna, M. M. G.; Lin, Y.; Englander, S. W. J. Mol. Biol. 2003, 331, 37-43.
13. (d) Nall, B. T.; Zuniga, E. H.; White, T. B.; Wood, L. C.; Ramdas, L. Biochemistry 1989, 28, 9834-9839.
14. (a) Krishna, M. M. G.; Lin, Y.; Rumbley, J. N.; Englander, S. W. J. Mol. Biol. 2003, 331, 29-36.
15. (b) Bai, Y.; Sosnick, T. R.; Mayne, L.; Englander, S. W. Science 1995, 269, 192-197.
16. (a) Godbole, S.; Dong, A.; Garbin, K.; Bowler, B. E. Biochemistry 1997, 36, 119-126.
17. (b) Godbole, S.; Bowler, B. E. Biochemistry 1999, 38, 487-495.
18. (c) Nelson, C. J.; Bowler, B. E. Biochemistry 2000, 39, 13584-13594.
19. (d) Nelson, C. J.; LaConte, M. J.; Bowler, B. E. J. Am. Chem. Soc. 2001, 123, 7453-7454.
20. (a) Thomas, P. J.; Qu, B.-H.; Pedersen, P. L. Trends Biochem. Sci. 1995, 20, 456-459.
21. (b) Dobson, C. M. Trends Biochem. Sci. 1999, 24, 329-332.
22. Döpner, S.; Hildebrandt, P.; Rosell, F. I.; Mauk, A. G.; von Walter, M.; Buse, G.; Soulimane, T. Eur. J. Biochem. 1999, 261, 379-391.
23. (a) Bowler, B. E.; May, K.; Zaragoza, T.; York, P.; Dong, A.; Caughey, W. S. Biochemistry 1993, 32, 183-190.
24. (b) Bowler, B. E.; Dong, A.; Caughey, W. S. Biochemistry 1994, 33, 2402-2408.
25. Tonomura, B.; Nakatani, H.; Ohnishi, M.; Yamaguchi-Ito, J.; Hiromi, K. Anal. Biochem. 1978, 84, 370-383.
26. Nall, B. T. In Cytochrome c: A Multidisciplinary Approach; Scott, R. A., Mauk, A. G., Eds.; University Science Books: Sausalito, CA, 1996; pp 167-200.
27. (a) Louie, G. V.; Brayer, G. D. J. Mol. Biol. 1990, 214, 527-555.
28. (b) Berghuis, A. M.; Brayer, G. D. J. Mol. Biol. 1992, 223, 959-976.
29. Wood, L. C.; White, T. B.; Ramdas, L.; Nall, B. T. Biochemistry 1988, 27, 8562-8568.
30. Hartshorn, R. T.; Moore, G. R. Biochem. J. 1989, 258, 595-598.
31. Pielak, G. J.; Auld, D. S.; Hilgen-Willis, S. E.; Garcia, L. L. In Cytochrome c: A Multidisciplinary Approach; Scott, R. A., Mauk, A. G., Eds.; University Science Books: Sausalito, CA, 1996; pp 203-284.
32. Cohen, J. S.; Hayes, M. B. J. Biol. Chem. 1974, 249, 5472-5477.
33. Robinson, M. N.; Boswell, A. P.; Huang, Z.-X.; Eley, C. G. S.; Moore, G. R. Biochem. J. 1983, 213, 687-700.
34. Fink, A. L. Folding Des. 1998, 3, R9-R23.
35. (a) Lyubovitsky, J. G.; Gray, H. B.; Winkler, J. R. J. Am. Chem. Soc. 2002, 124, 5481-5485.
36. (b) Tezcan, F. A.; Findley, W. M.; Crane, B. R.; Ross, S. A.; Lyubovitsky, J. G.; Gray, H. B.; Winkler, J. R. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 8626-8630.