Phylogenetic relationships of European strains of porcine reproductive and respiratory syndrome virus (PRRSV) inferred from DNA sequences of putative ORF-5 and ORF-7 genes

Virus Research

Volumn 42, Issue 1-2, 1996, Pages 159-165

  Suárez, Paloma ^a   Zardoya, Rafael ^a   Martín, M Jesús ^b   Prieto, Cinta ^a   Dopazo, Joaquin ^c   Solana, Alfredo ^a   Castro, José Ma ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^b Tecn el Diagnostico e Invest (TDI)   (Spain)

^c UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

Amino acid identifies; Maximum parsimony method; Polymerase chain reaction

Indexed keywords

AMINO ACID SEQUENCE; ARTERIVIRUS; ARTICLE; DNA SEQUENCE; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS;

ARTERIVIRIDAE; ARTERIVIRUS; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS; SUIDAE;

EID: 2542509003     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/0168-1702(95)01305-9     Document Type: Article

References (22)

1. Bautista, E.M., Goyal, S.M., Yoon, I.J., Joo, H.S. and Collins, J.E. (1993) Comparison of porcine alveolar macrophages and CL 2621 for the detection of porcine reproductive and respiratory syndrome (PRRS) virus and anti-PRRS antibody. J. Vet. Diagn. Invest. 5, 163-165.
2. Collins, J.E., Benfield, D.A., Christianson, W.T., Harris, L., Hennings, J.C., Shaw, D.P. et al. (1992) Isolation of swine infertility and respiratory syndrome virus (isolated ATCC-2332) in North America and experimental reproduction of the disease in gnotobiotic pigs. J. Vet. Diagn. Invest. 4, 117-126.
3. Conzelmann, K.K., Visser, N., Van Woensel, P. and Thiel, H.J. (1993) Molecular characterization of porcine reproductive and respiratory syndrome virus, a member of the Arterivirus group. Virology 193, 329-339.
4. Den Boon, J.A., Snijder, E.J., Chirnside, E.D., De Vries, A.A.F., Horzinek, M.C. and Spaan, W.J.M. (1991) Equine arteritis virus is not a togavirus but belongs to the coronavirus-like superfamily. J. Virol. 65, 2910-2920.
5. Domingo, E., Holland, J.J. and Ahlquist P. (1988) Variability of RNA genomes. In: RNA Genetics, Vol. 3. CRC Press, Boca Raton.
6. Felsenstein, J. (1985) Confidence limits on phylogenies: an aproach using the bootstrap. Evolution 39, 783-791.
7. Godeny, E.K., Chen, L., Kumar, S.N., Methven, S.L., Koonin, E.V. and Brinton M.A. (1993) Complete genomic sequence and phylogenetic analysis of lactate dehydrogenase-elevating virus (LDV). Virology 194, 585-596.
8. Hill, H. (1990) Overview and history of mystery swine disease (swine infertility respiratory syndrome). In: Proc. Mystery Swine Disease Committee Meet., Denver, October 6, 1990. Livestock Conservation Institute, Madison, pp. 29-31.
9. Kim, H.S., Kwang, J., Yoon, I.J., Joo, H.S. and Frey, M.L. (1993) Enhanced replication of porcine reproductive and respiratory syndrome (PRRS) virus in a homogenous subpopulation of MA-104 cell line. Arch. Virol. 133, 477-483.
10. Mardassi, H., Mounir, S. and Dea, S. (1994) Identification of major differences in the nucleocapsid protein genes of a Quebec strain and European strains of porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 75, 681-685.
11. Meng, X.J., Halbur, P.G. and Paul, P.S. (1994) Molecular cloning and nucleotide sequencing of the 3-terminal genomic RNA of the porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 75, 1795-1801.
12. Meng, X.J., Paul, P.S., Halbur, P.G. and Lum, M.A. (1995) Phylogenetic analyses of the putative M (ORF 6) and N (ORF 7) genes of porcine reproductive and respiratory syndrome virus (PRRSV): implication for the existence of two genotypes of PRRSV in the USA and Europe. Arch. Virol. 140, 745-755.
13. Meulenberg, J.J.M., Hulst, M.M., De Meijer, E.J., Moonen, P.L.J.M., Den Besten, A., De Kluyver, E.P. et al. (1993) Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV. Virology 192, 62-72.
14. Murtaugh, M. (1993) The PRRS virus. Proc. Allen D. Leman Swine Conf., Minneapolis, MN. University of Minnesota, Minneapolis, pp. 43-45.
15. Nelson, E.A., Christopher-Hennings, J., Drew, T., Wensvoort, G., Collins, J.E. and Benfield D.A. (1993) Differentiation of US an European isolates of Porcine Reproductive and Respiratory Syndrome virus by monoclonal antibodies. J. Clin. Micriobiol. 31, 3184-3189.
16. Plagemann, P.G.W, and Moenning, V. (1992) Lactate dehydrogenase-elevating virus, equine arteritis virus, and simian hemorrhagic fever virus: a new group of positive-strand RNA virus. Adv. Virus Res. 41, 99-192.
17. Suárez, P., Zardoya, R., Prieto, C., Solana, A., Tabarés, E., Bautista, J.M. and Castro, J.M. (1994) Direct detection of the porcine reproductive and respiratory syndrome virus (PRRS) virus by reverse polymerase chain reaction (RT-PCR). Arch. Virol. 135, 89-99.
18. Swofford, DL. (1993) PAUP: phylogenetic analysis using parsimony. Version 3.1.1. Illinois Natural History Survey, Champaign IL.
19. Terpstra, C., Weensvoort, G. and Van Leengoed, L.A.M.G. (1992) Persistence of Lelystad virus in herds affected by porcine epidemic abortion and respiratory syndrome. 12th Int. Pig Vet. Soc. 8/17-20. The Hague, p. 118.
20. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
21. Wensvoort, G., Terpstra, C., Pol, J.M.A., Ter Laak, E.A., Bloemraad, M., De Kluyver, E.P. et al. (1991) Mystery swine disease in the Netherlands; the isolation of Lelystad virus. Vet. Q. 13, 121-130.
22. Wensvoort, G., De Kluyver, E.P., Luijtze, E.A, Den Besten, A., Harris, L., Collins, J.E. et al. (1992) Antigenic comparison of Lelystad virus and swine infertility and respiratory syndrome virus. J. Vet. Diagn. Invest. 4, 134-138.