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Volumn 39, Issue 2, 2004, Pages 197-211

Phylogenetic diversity in South African Porphyra (Bangiales, Rhodophyta) determined by nuclear SSU sequence analyses

Author keywords

18S rDNA; Bangiales; Bangiophycidae; Nuclear SSU; Phylogenetics; Porphyra; Small subunit rDNA; South african biodiversity; Species identification

Indexed keywords

PHYLOGENETICS;

EID: 2542476420     PISSN: 09670262     EISSN: None     Source Type: Journal    
DOI: 10.1080/0967026042000202145     Document Type: Review
Times cited : (26)

References (48)
  • 3
    • 2642619432 scopus 로고    scopus 로고
    • Molecular systematics of the Gelidiales: Inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences
    • BAILEY, J.C. & FRESHWATER, D.W. (1997). Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences. Eur. J. Phycol., 32: 343-352.
    • (1997) Eur. J. Phycol. , vol.32 , pp. 343-352
    • Bailey, J.C.1    Freshwater, D.W.2
  • 6
    • 0033495257 scopus 로고    scopus 로고
    • Species recognition in New Zealand Porphyra using 18S rDNA sequencing
    • BROOM, J.E., JONES, W.A., HILL, D.F., KNIGHT, G.A. & NELSON, W.A. (1999). Species recognition in New Zealand Porphyra using 18S rDNA sequencing. J. Appl. Phycol., 11: 421-428.
    • (1999) J. Appl. Phycol. , vol.11 , pp. 421-428
    • Broom, J.E.1    Jones, W.A.2    Hill, D.F.3    Knight, G.A.4    Nelson, W.A.5
  • 7
    • 0036106780 scopus 로고    scopus 로고
    • A reassessment of the taxonomic status of Porphyra suborbiculata, Porphyra carolinensis and Porphyra lilliputiana (Bangiales, Rhodophyta) based on molecular and morphological data
    • BROOM, J.E.S., NELSON, W.A., YARISH, C., JONES, W.A., AGUILAR ROSAS, R. & AGUILAR ROSAS, L.E. (2002). A reassessment of the taxonomic status of Porphyra suborbiculata, Porphyra carolinensis and Porphyra lilliputiana (Bangiales, Rhodophyta) based on molecular and morphological data. Eur. J. Phycol., 37: 227-236.
    • (2002) Eur. J. Phycol. , vol.37 , pp. 227-236
    • Broom, J.E.S.1    Nelson, W.A.2    Yarish, C.3    Jones, W.A.4    Aguilar Rosas, R.5    Aguilar Rosas, L.E.6
  • 8
    • 2442585562 scopus 로고    scopus 로고
    • Phylogeny of the Bangia flora of New Zealand suggests a southern origin for Porphyra and Bangia (Bangiales, Rhodophyta)
    • in press
    • BROOM, J.E.S., FARR, T.J. & NELSON, W.A. (2004). Phylogeny of the Bangia flora of New Zealand suggests a southern origin for Porphyra and Bangia (Bangiales, Rhodophyta). Mol. Phylogenet. Evol. in press.
    • (2004) Mol. Phylogenet. Evol.
    • Broom, J.E.S.1    Farr, T.J.2    Nelson, W.A.3
  • 10
    • 0002746389 scopus 로고
    • The Tyson collection of marine algae
    • DELF, E.M. & MICHELL, M.R. (1921). The Tyson collection of marine algae. Ann. Bolus Herb., 3: 89-119.
    • (1921) Ann. Bolus Herb. , vol.3 , pp. 89-119
    • Delf, E.M.1    Michell, M.R.2
  • 11
    • 0344153015 scopus 로고    scopus 로고
    • A challenge to the taxonomy of Porphyra in Australia: The New Zealand red alga Porphyra rakiura (Bangiaceae, Rhodophyta) occurs in southern Australia, and is distinct from P. lucasii
    • FARR, T.J., NELSON, W.A. & BROOM, J.E.S. (2003). A challenge to the taxonomy of Porphyra in Australia: the New Zealand red alga Porphyra rakiura (Bangiaceae, Rhodophyta) occurs in southern Australia, and is distinct from P. lucasii. Aus. J. Syst. Biol., 16: 569-575.
    • (2003) Aus. J. Syst. Biol. , vol.16 , pp. 569-575
    • Farr, T.J.1    Nelson, W.A.2    Broom, J.E.S.3
  • 12
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • FARRIS, J.S. (1989). The retention index and the rescaled consistency index. Cladistics, 5: 417-419.
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 14
    • 84989622086 scopus 로고
    • PCR amplification of nuclear and plastid genes from algal herbarium specimens and algal spores
    • GOFF, L.J. & MOON, D.A. (1993). PCR amplification of nuclear and plastid genes from algal herbarium specimens and algal spores. J. Phycol., 29: 381-384.
    • (1993) J. Phycol. , vol.29 , pp. 381-384
    • Goff, L.J.1    Moon, D.A.2
  • 15
    • 0012564414 scopus 로고
    • The genus Porphyra on South African coasts. I. Observations on the autecology of Porphyra capensis sensu Isaac 1957, including a description of dwarf plants
    • GRAVES, J.M. (1969). The genus Porphyra on South African coasts. I. Observations on the autecology of Porphyra capensis sensu Isaac 1957, including a description of dwarf plants. J. S. Afr. Bot., 35: 343-362.
    • (1969) J. S. Afr. Bot. , vol.35 , pp. 343-362
    • Graves, J.M.1
  • 16
    • 0033384425 scopus 로고    scopus 로고
    • Porphyra aeodis sp. nov. (Bangiales, Rhodophyta), an epiphyte of Aeodes orbitosa from South Africa
    • GRIFFIN, N.J., BOLTON, J.J. & ANDERSON, R.J. (1999a). Porphyra aeodis sp. nov. (Bangiales, Rhodophyta), an epiphyte of Aeodes orbitosa from South Africa. Eur. J. Phycol., 34: 505-512.
    • (1999) Eur. J. Phycol. , vol.34 , pp. 505-512
    • Griffin, N.J.1    Bolton, J.J.2    Anderson, R.J.3
  • 17
    • 0033117837 scopus 로고    scopus 로고
    • The effects of a simulated harvest on Porphyra (Bangiales, Rhodophyta) in South Africa
    • GRIFFIN, N.J., BOLTON, J.J. & ANDERSON, R.J. (1999b). The effects of a simulated harvest on Porphyra (Bangiales, Rhodophyta) in South Africa. Hydrobiologia, 399: 183-189.
    • (1999) Hydrobiologia , vol.399 , pp. 183-189
    • Griffin, N.J.1    Bolton, J.J.2    Anderson, R.J.3
  • 18
    • 1842458649 scopus 로고    scopus 로고
    • World Wide Web electronic publication
    • GUIRY, M.D. & NIC DHONNCHA, E. (2003). AlgaeBase. World Wide Web electronic publication, www.algaebase.org, accessed on 23rd March 2003.
    • (2003) AlgaeBase
    • Guiry, M.D.1    Nic Dhonncha, E.2
  • 19
    • 0141694826 scopus 로고
    • A field culture and cytological study of porphyra garderi (Smith & Hollenberg) Comb nov. (= Porphyrella gardneri Smith & Hollenberg) (Bangiales, Rhodophyta)
    • HAWKES, M.W. (1977). A field culture and cytological study of porphyra garderi (Smith & Hollenberg) Comb nov. (= Porphyrella gardneri Smith & Hollenberg) (Bangiales, Rhodophyta). Phycologia, 16: 457-469.
    • (1977) Phycologia , vol.16 , pp. 457-469
    • Hawkes, M.W.1
  • 20
    • 0026300584 scopus 로고
    • Ribosomal DNA: Molecular evolution and phylogenetic inference
    • HILLIS, D.M. & DIXON, M.T. (1991). Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol., 66: 411-453.
    • (1991) Q. Rev. Biol. , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 21
    • 0012565163 scopus 로고
    • The distribution, ecology and taxonomy of Porphyra on South African coasts
    • ISAAC, W.E. (1957). The distribution, ecology and taxonomy of Porphyra on South African coasts. Proc. Linn. Soc. Lond., 168: 61-65.
    • (1957) Proc. Linn. Soc. Lond. , vol.168 , pp. 61-65
    • Isaac, W.E.1
  • 22
    • 0032764246 scopus 로고    scopus 로고
    • Discrimination of Porphyra species based on small subunit ribosomal RNA gene sequences
    • KUNIMOTO, M., KITO, H., YAMAMOTO, Y., CHENEY, D.P., KAMINISHI, Y. & MIZUKAMI, Y. (1999). Discrimination of Porphyra species based on small subunit ribosomal RNA gene sequences. J. Appl. Phycol., 11: 203-209.
    • (1999) J. Appl. Phycol. , vol.11 , pp. 203-209
    • Kunimoto, M.1    Kito, H.2    Yamamoto, Y.3    Cheney, D.P.4    Kaminishi, Y.5    Mizukami, Y.6
  • 24
    • 0027845705 scopus 로고
    • The systematics of Porphyra: Character evolution in closely related species
    • LINDSTROM, S.C. & COLE, K.M. (1993). The systematics of Porphyra: character evolution in closely related species. Hydrobiologia, 260/261: 151-157.
    • (1993) Hydrobiologia , vol.260-261 , pp. 151-157
    • Lindstrom, S.C.1    Cole, K.M.2
  • 25
    • 0036864014 scopus 로고    scopus 로고
    • Contribution to the seaweed flora of Namibia: New records of Rhodophyta
    • LLUCH, J.R. & GARRETA, A.G. (2002). Contribution to the seaweed flora of Namibia: new records of Rhodophyta. Bot. Mar., 45: 518-529.
    • (2002) Bot. Mar. , vol.45 , pp. 518-529
    • Lluch, J.R.1    Garreta, A.G.2
  • 27
    • 0034350373 scopus 로고    scopus 로고
    • Comparison of three methods for estimating internal support on phylogenetic trees
    • MORT, M.E., SOLTIS, P.S., SOLTIS, D.E. & MABRY, M.L. (2000). Comparison of three methods for estimating internal support on phylogenetic trees. Syst. Biol., 49: 16-171.
    • (2000) Syst. Biol. , vol.49 , pp. 16-171
    • Mort, M.E.1    Soltis, P.S.2    Soltis, D.E.3    Mabry, M.L.4
  • 28
    • 0032322014 scopus 로고    scopus 로고
    • Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America
    • MÜLLER, K.M., SHEATH, R.G., VIS, M.L., CREASE, T.J. & COLE, K.M. (1998). Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America. Phycologia, 37: 195-207.
    • (1998) Phycologia , vol.37 , pp. 195-207
    • Müller, K.M.1    Sheath, R.G.2    Vis, M.L.3    Crease, T.J.4    Cole, K.M.5
  • 29
    • 0034882882 scopus 로고    scopus 로고
    • A structural and phylogenetic analysis of the group ICI introns in the order Bangiales (Rhodophyta)
    • MÜLLER, K.M., CANNONE, J.J., GUTELL, R.R. & SHEATH, R.G. (2001a). A structural and phylogenetic analysis of the group ICI introns in the order Bangiales (Rhodophyta). Mol. Biol. Evol., 18: 1654-1667.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1654-1667
    • Müller, K.M.1    Cannone, J.J.2    Gutell, R.R.3    Sheath, R.G.4
  • 30
    • 0347039141 scopus 로고    scopus 로고
    • Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids
    • MÜLLER, K.M., OLIVEIRA, M.C., SHEATH, R.G. & BHATTACHARYA, D. (2001b). Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids. Am. J. Bot., 88: 1390-1400.
    • (2001) Am. J. Bot. , vol.88 , pp. 1390-1400
    • Müller, K.M.1    Oliveira, M.C.2    Sheath, R.G.3    Bhattacharya, D.4
  • 32
    • 0013237619 scopus 로고    scopus 로고
    • Four new species of Porphyra from the New Zealand region
    • NELSON, W.A., BROOM, J.E. & FARR, T.F. (2001). Four new species of Porphyra from the New Zealand region. Cryptogamie: Algol., 22: 263-284.
    • (2001) Cryptogamie: Algol. , vol.22 , pp. 263-284
    • Nelson, W.A.1    Broom, J.E.2    Farr, T.F.3
  • 34
    • 0028211831 scopus 로고
    • Variant forms of a Group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia
    • OLIVEIRA, M.C. & RAGAN, M.A. (1994). Variant forms of a Group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia. Mol. Biol. Evol., 11: 195-207.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 195-207
    • Oliveira, M.C.1    Ragan, M.A.2
  • 35
    • 84983883156 scopus 로고
    • A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of nuclear small-subunit ribosomal RNA genes
    • OLIVEIRA, M.C., KURNIAWAN, J., BIRD, C.J., RICE, E.L., MURPHY, C.A., SINGH, R.K., GUTELL, R.R. & RAGAN, M.A. (1995). A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of nuclear small-subunit ribosomal RNA genes. Phycol. Res., 43: 71-79.
    • (1995) Phycol. Res. , vol.43 , pp. 71-79
    • Oliveira, M.C.1    Kurniawan, J.2    Bird, C.J.3    Rice, E.L.4    Murphy, C.A.5    Singh, R.K.6    Gutell, R.R.7    Ragan, M.A.8
  • 36
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • POSADA, D. & CRANDALL, K. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics, 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.2
  • 37
    • 0028364254 scopus 로고
    • A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene
    • RAGAN, M., BIRD, C.J., RICE, E.L., GUTELL, R., MURPHY, C.A. & SINGH, R.K. (1994). A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene. Proc. Natl. Acad. Sci. USA, 91: 7276-7280.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 7276-7280
    • Ragan, M.1    Bird, C.J.2    Rice, E.L.3    Gutell, R.4    Murphy, C.A.5    Singh, R.K.6
  • 38
    • 0033384726 scopus 로고    scopus 로고
    • Systematics and biogeography of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families in North America
    • RINTOUL, T., SHEATH, R. & VIS, M. (1999). Systematics and biogeography of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families in North America. Phycologia, 38: 517-527.
    • (1999) Phycologia , vol.38 , pp. 517-527
    • Rintoul, T.1    Sheath, R.2    Vis, M.3
  • 40
    • 0027953222 scopus 로고
    • Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta). 1. Evidence for the Plocamiales ord. nov
    • SAUNDERS, G.W. & KRAFT, G.T. (1994). Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta). 1. Evidence for the Plocamiales ord. nov. Can. J. Bot., 72: 1250-1263.
    • (1994) Can. J. Bot. , vol.72 , pp. 1250-1263
    • Saunders, G.W.1    Kraft, G.T.2
  • 42
    • 0001461298 scopus 로고    scopus 로고
    • Catalogue of the benthic marine algae of the Indian Ocean
    • SILVA, P., BASSON, P. & MOE. R. (1996). Catalogue of the benthic marine algae of the Indian Ocean. Univ. Calif. Pub. Bot., 79: 1-1259.
    • (1996) Univ. Calif. Pub. Bot. , vol.79 , pp. 1-1259
    • Silva, P.1    Basson, P.2    Moe, R.3
  • 44
    • 84989640535 scopus 로고
    • Molecular analysis reveals cryptic diversity in Porphyra (Rhodophyta)
    • STILLER, J.W. & WAALAND, J.R. (1993). Molecular analysis reveals cryptic diversity in Porphyra (Rhodophyta). J. Phycol., 29: 506-517.
    • (1993) J. Phycol. , vol.29 , pp. 506-517
    • Stiller, J.W.1    Waaland, J.R.2
  • 46
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innes, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. editors, Academic Press, San Diego, CA, USA
    • WHITE, T.J., BRUNS, T., LEE, S. & TAYLOR J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: Guide to Methods and Applications (Innes, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. editors), 315-322. Academic Press, San Diego, CA, USA.
    • (1990) PCR Protocols: Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 48
    • 0002990318 scopus 로고    scopus 로고
    • The history and future prospects of systematics of Bangiaceae, Rhodophyta
    • YOSHIDA, T. (1997). The history and future prospects of systematics of Bangiaceae, Rhodophyta. Nat. Hist. Res., Special Issue No. 3: 1-4.
    • (1997) Nat. Hist. Res. , Issue.3 , pp. 1-4
    • Yoshida, T.1


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