-
1
-
-
0036083537
-
Molecular structure and physiological function of chloride channels
-
Jentsch T.J., Stein V., Weinreich F., Zdebik A.A. Molecular structure and physiological function of chloride channels. Physiol. Rev. 82:2002;503-568
-
(2002)
Physiol. Rev.
, vol.82
, pp. 503-568
-
-
Jentsch, T.J.1
Stein, V.2
Weinreich, F.3
Zdebik, A.A.4
-
2
-
-
0033873930
-
A decade of CLC chloride channels: Structure, mechanism, and many unsettled questions
-
Maduke M., Miller C., Mindell J.A. A decade of CLC chloride channels: structure, mechanism, and many unsettled questions. Annu. Rev. Biophys. Biomol. Struct. 29:2000;411-438
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 411-438
-
-
Maduke, M.1
Miller, C.2
Mindell, J.A.3
-
3
-
-
0035433168
-
ClC chloride channels in epithelia: Recent progress and remaining puzzles
-
Wills N.K., Fong P. ClC chloride channels in epithelia: recent progress and remaining puzzles. News Physiol. Sci. 16:2001;161-166
-
(2001)
News Physiol. Sci.
, vol.16
, pp. 161-166
-
-
Wills, N.K.1
Fong, P.2
-
4
-
-
0037126294
-
A biological role for prokaryotic ClC chloride channels
-
Iyer R., Iverson T.M., Accardi A., Miller C. A biological role for prokaryotic ClC chloride channels. Nature. 419:2002;715-718
-
(2002)
Nature
, vol.419
, pp. 715-718
-
-
Iyer, R.1
Iverson, T.M.2
Accardi, A.3
Miller, C.4
-
5
-
-
0035843079
-
Projection structure of a ClC-type chloride channel at 6.5 Å resolution
-
Mindell J.A., Maduke M., Miller C., Grigorieff N. Projection structure of a ClC-type chloride channel at 6.5 Å resolution. Nature. 409:2001;219-223
-
(2001)
Nature
, vol.409
, pp. 219-223
-
-
Mindell, J.A.1
Maduke, M.2
Miller, C.3
Grigorieff, N.4
-
7
-
-
0037122805
-
Ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
-
Dutzler R., Campbell E.B., Cadene M., Chait B.T., MacKinnon R.X.-. ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity. Nature. 415:2002;287-294
-
(2002)
Nature
, vol.415
, pp. 287-294
-
-
Dutzler, R.1
Campbell, E.B.2
Cadene, M.3
Chait, B.T.4
MacKinnon, R.X.5
-
8
-
-
0037418859
-
Gating the selectivity filter in ClC chloride channels
-
Dutzler R., Campbell E.B., MacKinnon R. Gating the selectivity filter in ClC chloride channels. Science. 300:2003;108-112
-
(2003)
Science
, vol.300
, pp. 108-112
-
-
Dutzler, R.1
Campbell, E.B.2
MacKinnon, R.3
-
10
-
-
0034940574
-
+ of the muscle-type ClC chloride channels
-
+ of the muscle-type ClC chloride channels. J. Gen. Physiol. 118:2001;23-32
-
(2001)
J. Gen. Physiol.
, vol.118
, pp. 23-32
-
-
Chen, M.F.1
Chen, T.Y.2
-
11
-
-
0034637572
-
Functional and structural analysis of ClC-K chloride channels involved in renal disease
-
Waldegger S., Jentsch T.J. Functional and structural analysis of ClC-K chloride channels involved in renal disease. J. Biol. Chem. 275:2000;24527-24533
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 24527-24533
-
-
Waldegger, S.1
Jentsch, T.J.2
-
14
-
-
0034730689
-
A computational study of ion binding and protonation states in the KcsA potassium channel
-
Luzhkov V., Åqvist J. A computational study of ion binding and protonation states in the KcsA potassium channel. Biochim. Biophys. Acta. 1481:2000;360-370
-
(2000)
Biochim. Biophys. Acta
, vol.1481
, pp. 360-370
-
-
Luzhkov, V.1
Åqvist, J.2
-
16
-
-
0033516590
-
+ channel: Electrostatic stabilization of monovalent cations
-
+ channel: electrostatic stabilization of monovalent cations. Science. 285:1999;100-102
-
(1999)
Science
, vol.285
, pp. 100-102
-
-
Roux, B.1
MacKinnon, R.2
-
17
-
-
0039179572
-
Ion channels, permeation and electrostatics: Insight into the function of KcsA
-
Roux B., Bernèche S., Im W. Ion channels, permeation and electrostatics: insight into the function of KcsA. Biochemistry. 39:2000;13295-13306
-
(2000)
Biochemistry
, vol.39
, pp. 13295-13306
-
-
Roux, B.1
Bernèche, S.2
Im, W.3
-
22
-
-
0142185496
-
+ selectivity filter: Charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates
-
+ selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates. J. Mol. Biol. 333:2003;965-975
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 965-975
-
-
Zhou, Y.F.1
MacKinnon, R.2
-
23
-
-
0032478818
-
+ conduction and selectivity
-
+ conduction and selectivity. Science. 280:1998;69-77
-
(1998)
Science
, vol.280
, pp. 69-77
-
-
Doyle, D.A.1
Cabral, J.M.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
Cahit, B.T.7
MacKinnon, R.8
-
26
-
-
0030197443
-
Effects of polarizability on the hydration of the chloride ion
-
Stuart S.J., Berne B.J. Effects of polarizability on the hydration of the chloride ion. J. Phys. Chem. 100:1996;11934-11943
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 11934-11943
-
-
Stuart, S.J.1
Berne, B.J.2
-
27
-
-
0142058551
-
Effect of polarizability of halide anions on the ionic solvation in water clusters
-
Yoo S., Lei Y.A., Zeng X.C. Effect of polarizability of halide anions on the ionic solvation in water clusters. J. Chem. Phys. 119:2003;6083-6091
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 6083-6091
-
-
Yoo, S.1
Lei, Y.A.2
Zeng, X.C.3
-
28
-
-
0034690250
-
Ion permeation mechanism of the potassium channel
-
Åqvist J., Luzhkov V. Ion permeation mechanism of the potassium channel. Nature. 404:2000;881-884
-
(2000)
Nature
, vol.404
, pp. 881-884
-
-
Åqvist, J.1
Luzhkov, V.2
-
29
-
-
0042213113
-
+ channel in a bilayer membrane
-
+ channel in a bilayer membrane. Biophys. J. 78:2000;2900-2917
-
(2000)
Biophys. J.
, vol.78
, pp. 2900-2917
-
-
Bernèche, S.1
Roux, B.2
-
30
-
-
0034783033
-
GYGD pore motifs in neighbouring potassium channel subunits interact to determine ion selectivity
-
Chapman M.L., Krovetz H.S., VanDongen A.M. GYGD pore motifs in neighbouring potassium channel subunits interact to determine ion selectivity. J. Physiol. London. 530:2001;21-33
-
(2001)
J. Physiol. London
, vol.530
, pp. 21-33
-
-
Chapman, M.L.1
Krovetz, H.S.2
Vandongen, A.M.3
-
32
-
-
0027488714
-
Dominant role of local dipoles in stabilizing uncompensated charges on a sulfate sequestered in a periplasmic active transport protein
-
He J.J., Quiocho F.A. Dominant role of local dipoles in stabilizing uncompensated charges on a sulfate sequestered in a periplasmic active transport protein. Protein Sci. 2:1993;1643-1647
-
(1993)
Protein Sci.
, vol.2
, pp. 1643-1647
-
-
He, J.J.1
Quiocho, F.A.2
-
33
-
-
0038342435
-
Crystal structure of M. tuberculosis ABC phosphate transport receptor: Specificity and charge compensation dominated by ion-dipole interactions
-
Vyas N.K., Vyas M.N., Quiocho F.A. Crystal structure of M. tuberculosis ABC phosphate transport receptor: specificity and charge compensation dominated by ion-dipole interactions. Structure. 11:2003;765-774
-
(2003)
Structure
, vol.11
, pp. 765-774
-
-
Vyas, N.K.1
Vyas, M.N.2
Quiocho, F.A.3
-
34
-
-
12444274301
-
Crystal structure of the potassium channel KirBac1.1 in the closed state
-
Kuo A., Gulbis J.M., Antcliff J.F., Rahman T., Lowe E.D., Zimmer J., et al. Crystal structure of the potassium channel KirBac1.1 in the closed state. Science. 300:2003;1922-1926
-
(2003)
Science
, vol.300
, pp. 1922-1926
-
-
Kuo, A.1
Gulbis, J.M.2
Antcliff, J.F.3
Rahman, T.4
Lowe, E.D.5
Zimmer, J.6
-
35
-
-
0037198626
-
Crystal structure and mechanism of a calcium-gated potassium channel
-
Jiang Y., Lee A., Chen J., Cadene M., Chait B.T., MacKinnon R. Crystal structure and mechanism of a calcium-gated potassium channel. Nature. 417:2002;512-522
-
(2002)
Nature
, vol.417
, pp. 512-522
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
36
-
-
0036873086
-
The Poisson-Boltzmann equation for biomolecular electrostatics: A tool for structural biology
-
Fogolari F., Molinari H. The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology. J. Mol. Recogn. 15:2002;377-392
-
(2002)
J. Mol. Recogn.
, vol.15
, pp. 377-392
-
-
Fogolari, F.1
Molinari, H.2
-
37
-
-
0037529067
-
Electrostatics and dynamics of proteins
-
Simonson T. Electrostatics and dynamics of proteins. Rep. Prog. Phys. 66:2003;737-787
-
(2003)
Rep. Prog. Phys.
, vol.66
, pp. 737-787
-
-
Simonson, T.1
-
38
-
-
0032096837
-
Continuum solvation model: Electrostatic forces from numerical solutions to the Poisson-Boltzmann equation
-
Im W., Beglov D., Roux B. Continuum solvation model: electrostatic forces from numerical solutions to the Poisson-Boltzmann equation. Comput. Phys. Commun. 111:1998;59-75
-
(1998)
Comput. Phys. Commun.
, vol.111
, pp. 59-75
-
-
Im, W.1
Beglov, D.2
Roux, B.3
-
39
-
-
0031167555
-
Atomic radii for continuum electrostatic calculations based on molecular dynamics free energy simulations
-
Nina M., Beglov D., Roux B. Atomic radii for continuum electrostatic calculations based on molecular dynamics free energy simulations. J. Phys. Chem. ser. B. 101:1997;5239-5248
-
(1997)
J. Phys. Chem. Ser. B
, vol.101
, pp. 5239-5248
-
-
Nina, M.1
Beglov, D.2
Roux, B.3
-
40
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., Karplus M. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4:1983;187-217
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
41
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell A.D., Bashford D., Bellott M., Dunbrack R.L., Evanseck J.D., Field M.J., et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. ser. B. 102:1998;3586-3616
-
(1998)
J. Phys. Chem. Ser. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
-
42
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. The Protein Data Bank. Nucl. Acids Res. 28:2000;235-242
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
43
-
-
0029669955
-
Free-energy determinants of α-helix insertion into lipid bilayers
-
Ben-Tal N., Ben-Shaul A., Nicholls A., Honig B. Free-energy determinants of α-helix insertion into lipid bilayers. Biophys. J. 70:1996;1803-1812
-
(1996)
Biophys. J.
, vol.70
, pp. 1803-1812
-
-
Ben-Tal, N.1
Ben-Shaul, A.2
Nicholls, A.3
Honig, B.4
-
44
-
-
0011613265
-
Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane
-
Bernèche S., Nina M., Roux B. Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane. Biophys. J. 75:1998;1603-1618
-
(1998)
Biophys. J.
, vol.75
, pp. 1603-1618
-
-
Bernèche, S.1
Nina, M.2
Roux, B.3
-
45
-
-
0033802790
-
Anchoring of a monotopic membrane protein: The binding of prostaglandin H2 synthase-1 to the surface of a phospholipid bilayer
-
Nina M., Bernèche S., Roux B. Anchoring of a monotopic membrane protein: the binding of prostaglandin H2 synthase-1 to the surface of a phospholipid bilayer. Eur. Biophys. J. 29:2000;439-454
-
(2000)
Eur. Biophys. J.
, vol.29
, pp. 439-454
-
-
Nina, M.1
Bernèche, S.2
Roux, B.3
-
47
-
-
0011930746
-
Theory of hydrophobic-bonding. II. The correlation between hydrocarbon solubility in water with solvent cavity surface area
-
Hermann R.B. Theory of hydrophobic-bonding. II. The correlation between hydrocarbon solubility in water with solvent cavity surface area. J. Phys. Chem. 76:1972;2754-2759
-
(1972)
J. Phys. Chem.
, vol.76
, pp. 2754-2759
-
-
Hermann, R.B.1
-
48
-
-
0017702985
-
Use of solvent cavity area and number of packed solvent molecules around a solute in regard to hydrocarbon solubilities and hydrophobic interactions
-
Hermann R.B. Use of solvent cavity area and number of packed solvent molecules around a solute in regard to hydrocarbon solubilities and hydrophobic interactions. Proc. Natl Acad. Sci. USA. 74:1977;4144-4145
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 4144-4145
-
-
Hermann, R.B.1
-
49
-
-
0000398347
-
Empirical correlation between hydrophobic free energy and aqueous cavity surface area
-
Reynolds J.A., Gilbert D.B., Tanford C. Empirical correlation between hydrophobic free energy and aqueous cavity surface area. Proc. Natl Acad. Sci. USA. 71:1974;2925-2927
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 2925-2927
-
-
Reynolds, J.A.1
Gilbert, D.B.2
Tanford, C.3
-
51
-
-
0037440938
-
Calculation of the dielectric permitivity profile for a nonuniform system: Application to a lipid bilayer simulation
-
Stern H.A., Feller S. Calculation of the dielectric permitivity profile for a nonuniform system: application to a lipid bilayer simulation. J. Chem. Phys. 118:2003;3401-3412
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 3401-3412
-
-
Stern, H.A.1
Feller, S.2
-
52
-
-
0031740601
-
Hydrophobic interactions of peptides with membrane interfaces
-
White S.H., Wimley W.C. Hydrophobic interactions of peptides with membrane interfaces. Biochim. Biophys. Acta. 1376:1998;339-352
-
(1998)
Biochim. Biophys. Acta
, vol.1376
, pp. 339-352
-
-
White, S.H.1
Wimley, W.C.2
-
53
-
-
0000831520
-
Solvation free energies estimated from macroscopic continuum theory: An accuracy assessment
-
Simonson T., Brünger A.T. Solvation free energies estimated from macroscopic continuum theory: an accuracy assessment. J. Phys. Chem. 98:1994;4683-4694
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 4683-4694
-
-
Simonson, T.1
Brünger, A.T.2
-
54
-
-
0030945495
-
Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties
-
Alexov E.G., Gunner M.R. Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties. Biophys. J. 74:1997;2075-2093
-
(1997)
Biophys. J.
, vol.74
, pp. 2075-2093
-
-
Alexov, E.G.1
Gunner, M.R.2
-
55
-
-
0035451052
-
What are the dielectric "constants" of proteins and how to validate electrostatic models?
-
Schutz C.N., Warshel A. What are the dielectric "constants" of proteins and how to validate electrostatic models? Proteins: Struct. Funct. Genet. 44:2001;400-417
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.44
, pp. 400-417
-
-
Schutz, C.N.1
Warshel, A.2
-
57
-
-
0031179495
-
A low energy short hydrogen bond in very high resolution structures of protein receptor-phosphate complexes
-
Wang Z., Luecke H., Yao N., Quiocho F.A. A low energy short hydrogen bond in very high resolution structures of protein receptor-phosphate complexes. Nature Struct. Biol. 4:1997;519-522
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 519-522
-
-
Wang, Z.1
Luecke, H.2
Yao, N.3
Quiocho, F.A.4
-
58
-
-
0031576989
-
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: A new homology modeling tool
-
Bower M.J., Cohen F.E., Dunbrack R.L. Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool. J. Mol. Biol. 267:1997;1268-1282
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1268-1282
-
-
Bower, M.J.1
Cohen, F.E.2
Dunbrack, R.L.3
-
59
-
-
0037168282
-
Atomic radii for continuum electrostatics calculations on nucleic acids
-
Banavali N.K., Roux B. Atomic radii for continuum electrostatics calculations on nucleic acids. J. Phys. Chem. ser. B. 106:2002;11026-11035
-
(2002)
J. Phys. Chem. Ser. B
, vol.106
, pp. 11026-11035
-
-
Banavali, N.K.1
Roux, B.2
-
61
-
-
0031187388
-
Langevin dipoles model for ab initio calculations of chemical processes in solution: Parametrization and application to hydration free energies of neutral and ionic solutes and conformational analysis in aqueous solution
-
Florian J., Warshel A. Langevin dipoles model for ab initio calculations of chemical processes in solution: parametrization and application to hydration free energies of neutral and ionic solutes and conformational analysis in aqueous solution. J. Phys. Chem. ser. B. 101:1997;5583-5595
-
(1997)
J. Phys. Chem. Ser. B
, vol.101
, pp. 5583-5595
-
-
Florian, J.1
Warshel, A.2
-
62
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
63
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt E.A., Bacon D.J. Raster3D: photorealistic molecular graphics. Methods Enzymol. 277:1997;505-524
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
64
-
-
0042377364
-
Side-chain charge effects and conductance determinants in the pore of ClC-0 chloride channels
-
Chen M.F., Chen T.Y. Side-chain charge effects and conductance determinants in the pore of ClC-0 chloride channels. J. Gen. Physiol. 122:2003;133-145
-
(2003)
J. Gen. Physiol.
, vol.122
, pp. 133-145
-
-
Chen, M.F.1
Chen, T.Y.2
-
66
-
-
0027968068
-
CLUSTAL W.: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W.: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
67
-
-
0033019968
-
Statistical mechanical equilibrium theory of selective ion channels
-
Roux B. Statistical mechanical equilibrium theory of selective ion channels. Biophys. J. 77:1999;139-153
-
(1999)
Biophys. J.
, vol.77
, pp. 139-153
-
-
Roux, B.1
|