Towards performance control on the Grid

Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

Volumn 363, Issue 1833, 2005, Pages 1793-1805

  Mayes, K R ^a   Lujan M ^a   Riley, G D ^a   Chin, J ^b   Coveney, P V ^b   Gurd, J R ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Distributed components; Grid; Migration; Performance control

Indexed keywords

EID: 25144504428     PISSN: 1364503X     EISSN: None     Source Type: Journal    
DOI: 10.1098/rsta.2005.1607     Document Type: Review

References (36)

1. Armstrong, C., Ford, R. W., Gurd, J. R., Luján, M., Mayes, K. R. & Riley, G. D. 2005 Performance control of scientific coupled models in grid environments. Concurrency Comput.: Pract. Exper. 17, 259-295.
2. Berman, F. et al. 2003 Adaptive computing on the Grid using AppLeS. IEEE Trans. Parall. Distrib. Syst. 14, 369-382.
3. Chen, H., Boghosian, B. M., Coveney, P. V. & Nekovee, M. 2000 A ternary lattice Boltzmann model for amphiphilic fluids. Proc. R. Soc. A 456, 2043-2057. (doi:10.1098/rspa.2000.0601.)
4. Chin, J., Harting, J., Jha, S., Coveney, P. V., Porter, A. R. & Pickles, S. M. 2003 Steering in computational science: mesoscale modelling and simulation. Contemp. Phys. 44, 417-434.
5. Douglis, F. & Ousterhout, J. K. 1991 Transparent process migration: design alternatives and the Sprite implementation. Software: Pract. Exper. 21, 757-785.
6. Español, P. & Warren, P. 1995 Statistical mechanics of dissipative particle dynamics. Europhys. Lett. 30, 191-196.
7. Flekkøy, E. G., Coveney, P. V. & Fabritiis, G. D. 2000 Foundations of dissipative particle dynamics. Phys. Rev. E 62, 2140-2157.
8. Ford, R. W., Riley, G. D., Bane, M. K., Armstrong, C. W. & Freeman, T. L. In press. GCF: a general coupling framework. Concurrency Comput.: Pract. Exper.
9. Furmento, N., Mayer, A., McGough, S., Newhouse, S., Field, T. & Darlington, J. 2001 Optimising of component-based applications within a grid environment. In Procceedings of the ACM/IEEE SC2001 Conference, Denver, Colorado, 10-16 November 2001, p. 53. Los Alamitos, CA: IEEE Computer Society. (doi:10.1109/sc.2001.10000.)
10. González-Segredo, N. & Coveney, P. V. 2004 Coarsening dynamics of ternary amphiphilic fluids and the self-assembly of the gyroid and sponge mesophases: lattice-Boltzmann simulations. Phys. Rev. E 69, 061501.
11. González-Segredo, N. & Coveney, P. V. 2004 Self-assembly of the gyroid cubic mesophase: lattice-Boltzmann simulations. Europhys. Lett. 65, 795-801.
12. González-Segredo, N., Nekovee, M. & Coveney, P. V. 2003 Three-dimensional lattice-Boltzmann simulations of critical spinodal decomposition in binary immiscible fluids. Phys. Rev. E 67, 046304.
13. Harting, J., Chin, J., Venturoli, M. & Coveney, P. V. 2005 Large-scale lattice Boltzmann simulations of complex fluids: advances through the advent of computational grids. Phil. Trans. R. Soc. A 363. (doi:10.1098/rsta.2005.1618.)
14. Hashimoto, Y., Chen, Y. & Ohashi, H. 2000 Immiscible real-coded lattice gas. Comput. Phys. Commun. 129, 56-62.
15. Huedo, E., Montero, R. S. & Llorente, I. M. 2004 A framework for adaptive execution in grids. Software: Pract. Exper. 34, 631-651.
16. Jury, S., Bladon, P., Cates, M., Krishna, S., Hagen, M., Ruddock, N. & Warren, P. 1999 Simulation of amphiphilic mesophases using dissipative particle dynamics. Phys. Chem. Chem. Phys. 1, 2051-2056.
17. Kandhai, D., Koponen, A., Hoekstra, A. G., Kataja, M., Timonen, J. & Sloot, P. M. A. 1998 Lattice-Boltzmann hydrodynamics on parallel systems. Comput. Phys. Commun. 111, 14-26.
18. Kennedy, K. et al. 2002 Toward a framework for preparing and executing adaptive Grid programs. In Proceedings of NSF Next Generation Systems Program Workshop (International Parallel and Distributed Processing Symposium), Fort Lauderdale, FL, April, 2002, p. 322. Los Alamitos, CA: IEEE Computer Society. (doi:10.1109/IPDPS.2002.1016570.)
19. Lamura, A., Gonnella, G. & Yeomans, J. M. 1999 A lattice-Boltzmann model of ternary fluid mixtures. Europhys. Lett. 45, 314-320.
20. Litzkow, M., Tannenbaum, T., Basney, J. & Livny, M. 1997 Checkpoint and migration of UNIX processes in the Condor distributed processing system. Technical Report UW-CS-TR-1346. Computer Sciences Department, University of Wisconsin, Madison.
21. Love, P. J., Nekovee, M., Coveney, P. V., Chin, J., González- Segredo, N. & Martin, J. M. R. 2003 Simulations of amphiphilic fluids using mesoscale lattice-Boltzmann and lattice-gas methods. Comput. Phys. Commun. 153, 340-358.
22. Malevanets, A. & Kapral, R. 1998 Continuous-velocity lattice-gas model for fluid flow. Europhys. Lett. 44, 552-558.
23. Mayes, K. R., Riley, G.D, Ford, R. W., Luján, M., Freeman, T. L. & Addison, C. 2004 The design of a performance steering system for component-based grid applications. In Performance analysis and grid computing (ed. V. Getov, M. Gerndt, A. Hoisie, A. Malony & B. Miller), pp. 111-127. Dordrecht: Kluwer Academic.
24. Nekovee, M. & Coveney, P. V. 2001 Lattice-Boltzmann simulations of self-assembly of a binary water-surfactant system into ordered bicontinuous cubic and lamellar phases. J. Am. Chem. Soc. 123, 12380.
25. Nekovee, M., Chin, J., González-Segredo, N. & Coveney, P. V. 2001 A parallel lattice-Boltzmann method for large scale simulations of complex fluids. In Computational fluid dynamics, Proc. Fourth UNAM Supercomputing Conference, Singapore (ed. E. Ramos, et al.), p. 204. Singapore: World Scientific.
26. Pickles, S. M. et al. 2004 The tera gyroid experiment. In Proceedings of the Workshop on Case Studies on Grid Applications at GGF 10 2004.
27. Reed, D. A., Elford, C. L., Madhyastha, T. M., Smirni, E. & Lamm, S. E. 1996 The next frontier: interactive and closed loop performance steering Proc. 25th Int. Conf. on Parallel Processing Workshop, August, 1996, pp. 20-31.
28. Ribler, R. L., Simitci, H. & Reed, D. A. 2001 The Autopilot performance-directed adaptive control system. Future Gen. Comp. Syst. 18, 175-187.
29. Rivet, J.-P. & Boon, J. P. 2001 Lattice gas hydrodynamics. Cambridge: Cambridge University Press.
30. Sakai, T., Chen, Y. & Ohashi, H. 2000 Formation of micelle in the real-coded lattice gas. Comput. Phys. Commun. 129, 75-81.
31. Seddon, J. M. & Templer, R. H. 1995 Polymorphism of lipid-water systems, ch. 3. In Handbook of biological physics (ed. R. Lipowsky & E. Sackmann) Structure and dynamics of membranes, vol. 1, pp. 97-160. Amsterdam: Elsevier Science. (Hoff, A. J., series ed.)
32. Shan, X. & Chen, H. 1993 Lattice Boltzmann model for simulating flows with multiple phases and components. Phys. Rev. E 47, 1815-1819.
33. Succi, S. 2001 The Lattice Boltzmann equation for fluid dynamics and beyond. Oxford: Oxford University Press.
34. Swift, M. R., Osborn, W. R. & Yeomans, J. M. 1995 Lattice Boltzmann simulation of nonideal fluids. Phys. Rev. E 75, 830-833.
35. Tapus, J. H. C., Chung, I.-H. & Hollingsworth, J. K. 2002 Active harmony: towards automated performance tuning Proc. IEEE/ACM Supercomputing SC2002 Conf., Baltimore, Maryland, 16-22 November 2002, p. 44.
36. Vadhiyar, S. S. & Dongarra, J. J. 2003 A performance oriented migration framework for the grid. In Proc. IEEE/ACM CCGrid, Tokyo, Japan, 12-15 May 2003, pp. 12-15. Los Alamitos: IEEE Computer Society Press.