A study of spoligotyping-defined Mycobacterium tuberculosis clades in relation to the origin of peopling and the demographic history in Madagascar

Infection, Genetics and Evolution

Volumn 5, Issue 4, 2005, Pages 340-348

  Ferdinand, Séverine ^a   Sola, Christophe ^a   Chanteau, Suzanne ^b,c   Ramarokoto, Herimanana ^b   Rasolonavalona, Tiana ^b   Rasolofo Razanamparany, Voahangy ^b   Rastogi, Nalin ^a  

^a Institut Pasteur de Guadeloupe   (Guadeloupe)

^b INSTITUT PASTEUR DE MADAGASCAR   (Madagascar)

^c Centre de Recherche Medicale et Sanitaire   (Niger)

Author keywords

Evolutionary genetics; Madagascar; Mycobacterium tuberculosis; Phylogeny; Spoligotyping

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; CONTROLLED STUDY; DEMOGRAPHY; DNA EXTRACTION; DNA POLYMORPHISM; DRUG SENSITIVITY; GENE CLUSTER; GENETIC ANALYSIS; GENETIC CONSERVATION; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HEALTH CARE POLICY; HUMAN; INCIDENCE; INFECTION CONTROL; MADAGASCAR; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; TUBERCULOSIS;

BACTERIAL TYPING TECHNIQUES; DATABASES, NUCLEIC ACID; GENOTYPE; HISTORY, ANCIENT; HUMANS; MADAGASCAR; MYCOBACTERIUM TUBERCULOSIS; PHYLOGENY; POLYMORPHISM, GENETIC; TUBERCULOSIS;

BACILLI; MYCOBACTERIUM TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS COMPLEX;

EID: 25144501466     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2004.10.002     Document Type: Article

References (39)

1. S. Banu S.V. Gordon S. Palmer R. Islam S. Ahmed K.M. Alam et al. Genotypic analysis of Mycobacterium tuberculosis in Bangladesh and prevalence of the Beijing strain J. Clin. Microbiol. 42 2004 674-682
2. J. Bauer A.B. Andersen K. Kremer H. Miörner Usefulness of spoligotyping to discriminate IS6110 Low-copy-number Mycobacterium tuberculosis complex strains cultures in Denmark J. Clin. Microbiol. 37 1999 2602-2606
3. R. Brosch S.V. Gordon M. Marmiesse P. Brodin C. Buchrieser K. Eiglmeier et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex Proc. Natl. Acad. Sci. U.S.A. 99 2002 3684-3689
4. L.L. Cavalli-Sforza P. Menozzi A. Piazza Chapter 3: Africa, 3.4.1: Physical anthropology of modern africans In: P.M.L. Luca Cavalli-Sforza A. Piazza (Eds.) The History and Geography of Human Genes, vol. Abridged paperback edition 1994 Princeton University Press Princeton, NJ 168
5. S. Chanteau V. Rasolofo H. Ramarokoto T. Rasolonavalona O. Ratsirahonana M. Ratsitorahina et al. Anti-tuberculous drug resistance in Madagascar in 1994-1995 Int. J. Tuberc. Lung Dis. 1 1997 405-410
6. L.S. Cowan L. Diem M.C. Brake J.T. Crawford Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system J. Clin. Microbiol. 42 2004 474-477
7. J.W. Dale H. Al-Ghusein S. Al-Hasmi P.D. Butcher A. Dickens F. Drobniewski et al. Evolutionary relationships amongst isolates of Mycobacterium tuberculosis with few copies of IS6110 J. Bacteriol. 185 2003 2555-2562
8. A.J. Enright C.A. Ouzounis BioLayout an automatic graph layout algorithm for similarity visualization Bioinformatics 17 2001 853-854
9. I. Filliol J.R. Driscoll D. van Soolingen B.N. Kreiswirth K. Kremer G. Valetudie et al. A snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study J. Clin. Microbiol. 41 2003 1963-1970
10. I. Filliol J.R. Driscoll D. van Soolingen B.N. Kreiswirth K. Kremer G. Valetudie et al. Global distribution of Mycobacterium tuberculosis spoligotypes Emerg. Inf. Dis. 8 2002 1347-1350
11. N.G. Fomukong T.H. Tang S. Al-Maamary W.A. Ibrahim S. Ramayah M. Yates et al. Insertion sequence typing of Mycobacterium tuberculosis: characterization of a widespread subtype with a single copy of IS6110 Tuber. Lung Dis. 75 1994 435-440
12. N. Fomukong M. Beggs H.E. Hajj G. Templeton K. Eisenach M.D. Cave Differences in the prevalence of IS6110 insertion sites in Mycobacterium tuberculosis strains: Low and high copy number of IS6110 Tuber. Lung Dis. 78 1998 109-116
13. R. Frothingham W.A. Meeker-O'Connell Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats Microbiology 144 1998 1189-1196
14. Y.O. Goguet de la Salmoniere H.M. Li G. Torrea A. Bunschoten J.D.A. van Embden B. Gicquel Evaluation of spoligotyping in a study of the transmission of Mycobacterium tuberculosis J. Clin. Microbiol. 35 1997 2210-2214
15. E. Hagelberg M. Kayser M. Nagy L. Roewer H. Zimdahl M. Krawczak et al. Molecular genetic evidence for the human settlement of the Pacific: analysis of mitochondrial DNA Y chromosome and HLA markers Philos. Trans. R. Soc. London B: Biol. Sci. 354 1999 141-152
16. R. Hewitt A. Krause A. Goldman G. Campbell T. Jenkins Beta-globin haplotype analysis suggests that a major source of Malagasy ancestry is derived from Bantu-speaking Negroids Am. J. Hum. Genet. 58 1996 1303-1308
17. R.S. Heyderman M. Goyal P. Roberts S. Ushewokunze S. Zishou B.G. Marshall et al. Pulmonary tuberculosis in Harare, Zimbabwe: Analysis by spoligotyping Thorax 53 1998 346-350
18. A.E. Hirsh A.G. Tsolaki K. DeRiemer M.W. Feldman P.M. Small Stable association between strains of Mycobacterium tuberculosis and their human host populations Proc. Natl. Acad. Sci. U.S.A. 101 2004 4871-4876
19. J. Kamerbeek L. Schouls A. Kolk M. van Agterveld D. van Soolingen S. Kuijper et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology J. Clin. Microbiol. 35 1997 907-914
20. K. Kremer D. van Soolingen R. Frothingham W.H. Haas P.W.M. Hermans C. Martin et al. Comparison of methods based on different molecular epidemiologial markers for typing of Mycobacterium tuberculosis strains: interlaboratory study of discriminatory power and reproducibility J. Clin. Microbiol. 37 1999 2607-2618
21. McHugh, T.D., Batt, S.L., Shorten, R.J., Gosling, R.D., Uiso, L., Gillespie, S.H., in press, 2005. Mycobacterium tuberculosis lineage: A naming of the parts. Tuberculosis (Edinburgh).
22. F. Migot B. Perichon P.M. Danze L. Raharimalala J.P. Lepers P. Deloron et al. HLA class II haplotype studies bring molecular evidence for population affinity between Madagascans and Javanese Tissue Antigens 46 1995 131-135
23. H.O. Molhuizen A.E. Bunschoten L.M. Schouls J.D.A. van Embden Rapid detection and simultaneous strain differentiation of Mycobacterium tuberculosis complex bacteria by spoligotyping Meth. Mol. Biol. 101 1998 381-394
24. S. Ngo Niobe-Eyangoh C. Kuaban P. Sorlin P. Cunin J. Thonnon C. Sola et al. Genetic biodiversity of Mycobacterium tuberculosis complex strains from patients with pulmonary tuberculosis in Cameroon J. Clin. Microbiol. 41 2003 2547-2553
25. V. Rasolofo H. Ramarokoto T. Rasolonavalona E.J. Vololonirina J. Clouzeau B. Cauchoix La tuberculose chez les enfants de moins de 11 ans: résistance primaire et variants génétiques dominants de Mycobacterium tuberculosis à Antananarivo Arch. Inst. Pasteur Madagascar 68 2002 41-43
26. V. Rasolofo-Razanamparany G. Auregan O. Ratsirahonana R. Raharimanana R. Ramarokoto B. Gicquel Polymorphisme génétique des souches du complexe M. tuberculosis a Antananarivo Arch. Inst. Pasteur Madagascar 62 1995 59-64
27. V. Rasolofo-Razanamparany D. Ménard T. Rasolonavalona H. Ramarokoto F. Rakotomanana G. Aurgan Prevalence of Mycobacterium bovis in human pulmonary and extra-pulmonary tuberculosis in Madagascar Int. J. Tuberc. Lung. Dis. 3 1999 632-634
28. V. Rasolofo-Razanamparany D. Ménard M. Ratsitorahina G. Aurégan B. Gicquel S. Chanteau Transmission of tuberculosis in the prison of Antananarivo Madagascar Res. Microbiol. 151 2000 785-795
29. V. Rasolofo-Razanamparany H. Ramarokoto G. Auregan B. Gicquel S. Chanteau A combination of two genetic markers is sufficient for restriction fragment length polymorphism typing of Mycobacterium tuberculosis complex in areas with a high incidence of tuberculosis J. Clin. Microbiol. 39 2001 1530-1535
30. U.B. Singh N. Suresh N. Vijaya Bhanu J. Arora H. Pant S. Sinha et al. Predominant tuberculosis spoligotypes, Delhi, India Emerg. Inf. Dis. 10 2004 1138-1142
31. C. Sola I. Filliol C. Guttierez I. Mokrousov V. Vincent N. Rastogi Spoligotype database of Mycobacterium tuberculosis: Biogeographical distribution of shared types and epidemiological and phylogenetic perspectives Emerg. Inf. Dis. 7 2001a 390-396
32. C. Sola I. Filliol E. Legrand I. Mokrousov N. Rastogi Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110 VNTR and DR-based spoligotyping suggests the existence of two new phylogeographical clods J. Mol. E 53 2001 680-689
33. E.M. Streicher R.M. Warren C. Kewley J. Simpson N. Rastogi C. Sola et al. Genotypic and phenotypic characterization of drug-resistant Mycobacterium tuberculosis isolates from rural districts of the Western Cape province of South Africa J. Clin. Microbiol. 42 2004 891-894
34. P. Supply S. Lesjean E. Savine K. Kremer D. van Soolingen C. Locht Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units J. Clin. Microbiol. 39 2001 3563-3571
35. J.D.A. Van Embden T. van Gorkom K. Kremer R. Jansen B.A.M. van der Zeijst L.M. Schouls Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria J. Bacteriol. 182 2000 2393-2401
36. C. Viana-Niero C. Gutierrez C. Sola I. Filliol F. Boulahbal V. Vincent et al. Genetic diversity of Mycobacterium africanum clinical isolates based on IS6110-restriction fragment length polymorphism analysis, spoligotyping, and variable number of tandem DNA repeats (in Process citation) J. Clin. Microbiol. 39 2001 57-65
37. T.C. Victor P.E. de Haas A.M. Jordaan G.D. van der Spuy M. Richardson D. van Soolingen Molecular characteristics and global spread of Mycobacterium tuberculosis with a western cape F11 genotype J. Clin. Microbiol. 42 2004 769-772
38. N. Vijaya-Bhanu D. van Soolingen J.D.A. van Embden L. Dar R.M. Pandey P. Seth Predominance of a novel Mycobacterium tuberculosis genotype in the Delhi region of India Tuberculosis 82 2002 105-112
39. R.M. Warren E.M. Streicher S.L. Sampson G.D. Van Der Spuy M. Richardson D. Nguyen et al. Microevolution of the Direct Repeat Region of Mycobacterium tuberculosis: Implications for interpretation of spoligotyping data J. Clin. Microbiol. 40 2002 4457-4465