Genotyping of hepatitis B virus isolated from chronic hepatitis B patients in the south of Turkey by DNA cycle-sequencing method

Diagnostic Microbiology and Infectious Disease

Volumn 53, Issue 1, 2005, Pages 57-60

  Serin, Mehmet S ^a   Akkiz, Hikmet ^b   Abayli, Bahri ^b   Oksuz, Murat ^b   Aslan, Gonul ^a   Emekdas, Gurol ^a  

^a MERSIN UNIVERSITY   (Turkey)

^b CUKUROVA UNIVERSITY   (Turkey)

Author keywords

Cycle sequencing; Genotypes; HBV; PCR

Indexed keywords

VIRUS DNA; VITRONECTIN;

ARTICLE; CHRONIC HEPATITIS; CONTROLLED STUDY; DNA SEQUENCE; GENETIC VARIABILITY; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TURKEY (REPUBLIC); VIRUS GENE; VIRUS ISOLATION; VIRUS TYPING;

DNA, VIRAL; GENOTYPE; HEPATITIS B VIRUS; HEPATITIS B, CHRONIC; HUMANS; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TURKEY;

EID: 25144472549     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2005.04.007     Document Type: Article

References (25)

1. P. Arauz-Ruiz, H. Norder, B.H. Robertson, and L.O Magnius A new Amerindian genotype of hepatitis B virus related in Central America J. Gen. Virol. 83 2002 2059 2073
2. A. Bartholomeusz, and S. Schaefer Hepatitis B virus genotypes: comparison of genotyping methods Rev. Med. Virol. 14 2004 3 16
3. A.M. Bozdayi, H. Bozkaya, A.R. Turkyilmaz, M. Saryodlu, H. Cetinkaya, S. Karayalcin, C. Yurdaydin, and C. Uzunalimoglu Nucleotide divergences in the core promoter and precore region of genotype D hepatitis B virus in patients with persistently elevated or normal ALT levels J. Clin. Virol. 21 2001 91 101
4. B. Clarke, and S. Bloor Molecular genotyping of hepatitis B virus J. Clin. Virol. 25 2002 S41 S45
5. T. Ehata, M. Omata, O. Yokosuka, K. Hosoda, and M. Ohto Variation in codons 84-101 in the core nucleotide sequence correlates with hepatocellular injury in chronic hepatitis B virus infection J. Clin. Invest. 89 1992 332 338
6. H. Fujie, K. Moriya, Y. Shintani, H. Yotsuyanagi, S. Iino, and K. Koike Hepatitis B virus genotypes and hepatocellular carcinoma in Japan Gastroenterology 120 2001 1564 1565
7. M. Kann, and W.H. Gerlich Hepatitis B L. Collier A. Bolows M. Sussman Topley and Wilson's microbiology and microbial infections 9th ed 1999 [CD-ROM]
8. J.H. Kao, P.J. Chen, M.Y. Lai, and D.S. Chen Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B Gastroenterology 118 2000 554 559
9. H. Kato, E. Orito, F. Sugauchi, R. Ueda, R.G. Gish, S. Usuda, Y. Miyakawa, and M. Mizokami Determination of hepatitis B virus genotype G by polymerase chain reaction with hemi-nested primers J. Virol. Methods 98 2001 153 159
10. K. Kikuchi, H. Niitsuma, M. Ishii, J.G. Cervantes, S. Hong, T. Ojima, C. Suzuki, T. Kobayashi, Y. Ueno, K. Kobayashi, T. Shimosegawa, and T. Toyota Genoepidemiology and its relation to clinical features in patients infected chronically with hepatitis B virus (HBV) Hepatol. Res. 17 2000 43 55
11. O. Kirschberg, C. Schüttler, R. Repp, and A.F. Schaefer A multiplex-PCR to identify hepatitis B virus-genotypes A-F J. Clin. Virol. 29 2004 39 43
12. M. Kobayashi, Y. Arase, K. Ikeda, A. Tsubota, Y. Suzuki, S. Saitoh, M. Kobayashi, F. Suzuki, N. Akuda, T. Someya, M. Matsuda, J. Sato, and H. Kumada Clinical characteristics of patients infected with hepatitis B virus genotypes A, B, and C J. Gastroenterol. 37 2002 35 39
13. C. Kulah, and C.M. Yalinay Genotyping of Turkish hepatitis B virus isolates based on the sequencing of the S region 2nd Molecular and Diagnostic Microbiology Congress Abstract Book 1998 Hodder Arnold London, UK
14. S. Laperche, A. Girault, M.J. Beaulieu, F. Boucharddeau, and A.M. Courouce Determination of hepatitis B virus subtypes by an enzyme immunoassay method using monoclonal antibodies to type-specific epitopes of HBsAg J. Viral. Hepat. 8 2001 447 453
15. J.E. Maynard Hepatitis B: global importance and need for control Vaccine 8 Suppl 1990 S18 S23
16. M. Misirlioglu, E. Kayin, E. Akman, and S. Tuncer Hepatitis B virus genotypes and viral load analysis in pre and post vaccination sera from carrier children 2nd Molecular and Diagnostic Microbiology Congress Abstract Book 2002 Ankara Mikrobiyoloji Dernegi Ankara, Turkey
17. M.T. Mizokami, T. Nakano, E. Orito, Y. Tanaka, H. Sakugawa, M. Mukaide, and B.H. Robertson Hepatitis B virus genotype assignment using restriction fragment length polymorphism patterns FEBS Lett. 450 1999 66 71
18. H. Norder, A.M. Courouce, and L.O. Magnius Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes Virology 198 1994 489 503
19. K. Ohba, M. Mizokami, T. Ohno, K. Suzuki, E. Orito, J.Y. Lau, Y. Ina, K. Ikeo, and T. Gojobori Relationships between serotypes and genotypes of hepatitis B virus: genetic classification of HBV by use of surface genes Virus Res. 39 1995 25 34
20. H. Okamoto, F. Tsuda, H. Sakugawa, R.I. Sastrosoewignjo, M. Imai, and Y. Miyakawa Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes J. Gen. Virol. 69 1988 2575 2583
21. E. Orito, T. Ichida, H. Sakugawa, M. Sata, N. Horiike, K. Hino, K. Okika, T. Okanoue, S. Iino, E. Tanaka, K. Suzuki, H. Watanabe, S. Hiye, and M. Mizolami Geographic distribution of hepatitis B virus (HBV) genotype in patients with chronic HBV infection in Japan Hepatology 34 2001 590 594
22. L. Stuyver, C. Van Geyt, S. De Gendt, G. Van Reybroeck, F. Zoulim, G. Leroux-Roels, and R. Rossau Line probe assay for monitoring drug resistance in hepatitis B virus-infected patients during antiviral therapy J. Clin. Microbiol. 38 2000 702 707
23. S.A. Teles, R.M. Martins, B. Vanderborght, L. Stuyver, A.M. Gaspar, and C.F. Yoshida Hepatitis B virus: genotypes and subtypes in Brazilian hemodialysis patients Artif. Organs 23 1999 1074 1078
24. V. Thakur, R.C. Guptan, S.N. Kazim, V. Malhotra, and S.K. Sarin Profile and significance of HBV genotypes in chronic liver disease patients in the Indian subcontinent J. Gastroenterol. Hepatol. 17 2002 113 115
25. S. Usuda, H. Okamoto, H. Iwanari, K. Baba, F. Tsuda, Y. Miyakawa, and M. Mayumi Serological detection of hepatitis B virus genotypes by ELISA with monoclonal antibodies to type-specific epitopes in the preS2-region product J. Virol. Methods 80 1999 97 112