Within-population spatial genetic structure, neighbourhood size and clonal subrange in the seagrass Cymodocea nodosa

Molecular Ecology

Volumn 14, Issue 9, 2005, Pages 2669-2681

  Alberto, Filipe ^a   Gouveia, Licínia ^a   Arnaud Haond, Sophie ^a   Pérez Lloréns, José L ^b   Duarte, Carlos M ^c   Serrão, Ester A ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

^b UNIVERSITY OF CÁDIZ   (Spain)

^c INSTITUTO MEDITERRÁNEO DE ESTUDIOS AVANZADOS   (Spain)

Author keywords

Clonal plant; Clonal subrange; Cymodocea nodosa; Microsatellites; Seagrass; SGS

Indexed keywords

CYMODOCEA NODOSA; EMBRYOPHYTA; HALOPHILA;

MICROSATELLITE DNA; SEA WATER;

ANGIOSPERM; ARTICLE; COMPARATIVE STUDY; DEMOGRAPHY; GENETICS; GENOTYPE; HETEROZYGOTE; PHYSIOLOGY; POPULATION GENETICS; REPRODUCTION; SPAIN;

ANGIOSPERMS; DEMOGRAPHY; GENETICS, POPULATION; GENOTYPE; HETEROZYGOTE; MICROSATELLITE REPEATS; REPRODUCTION; SEAWATER; SPAIN;

EID: 24944583202     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02640.x     Document Type: Article

References (61)

1. Alberto F, Mata L, Santos R (2001) Genetic homogeneity in the seagrass Cymodocea nodosa at its northern Atlantic limit revealed through RAPD. Marine Ecology Progress Series, 221, 299-301.
2. Alberto F, Correia L, Billot C, Duarte CM, Serrão E (2003) Isolation and characterization of microsatellite markers for the seagrass Cymodocea nodosa. Molecular Ecology Notes, 3, 397-399.
3. Arnaud-Haond S, Alberto F, Procaccini G, Serrão EA, Duarte CM (2005) Assessing genetic diversity in clonal organisms: low diversity or low resolution? Combining power and cost-efficiency in selecting markers. Journal of Heredity, 3, 1-7.
4. Auge H, Brandl R (1997) Seedling recruitment in the invasive clonal shrub, Mahonia aquifolium Pursh (Nutt). Oecologia, 110, 205-211.
5. Auge H, Neuffer B, Erlinghagen F, Grupe R, Brandl R (2001) Demographic and random amplified polymorphic DNA analyses reveal high levels of genetic diversity in a clonal violet. Molecular Ecology, 10, 1811-1819.
6. Billingham M, Reusch TB, Alberto F, Serrão EA (2003) Is asexual reproduction more important at geographical limits? A genetic test of the seagrass Zostera marina in the Ria Formosa, Portugal. Marine Ecology Progress Series, 265, 77-83.
7. Bonin I, Ronfort J, Wozniak F, Olivierri I (2001) Spatial effects and rare outcrossing events in Medicago truncatula (Fabaceae). Molecular Ecology, 10, 1371-1384.
8. Buia MC, Mazzella L (1991) Reproductive phenology of the Mediterranean seagrasses Posidonia oceanica (L.) Delile, Cymodocea nodosa (Ucria) Aschers, and Zostera noltii Hornem. Aquatic Botany, 40, 343-362.
9. Caujapé-Castells J, Pedrola-Monfort J (1997) Space-time patterns of genetic structure within a stand of Androcymbium gramineum (Cav.) McBride (Colchicaceae). Heredity, 79, 341-349.
10. Caye G, Meinesz A (1985) Observations of the vegetative development, flowering and seeding of Cymodocea nodosa (Ucria) Acherson on the Mediterranean coasts of France. Aquatic Botany, 22, 277-289.
11. Chung MG, Epperson BK (1999) Spatial genetic structure and clonal and sexual reproduction in populations of Adenophora grandiflora (Campanulaceae). Evolution, 53, 1068-1078.
12. Chung MG, Epperson BK (2000) Clonal and spatial genetic structure in Eurya emarginata (Theaceae). Heredity, 84, 170-177.
13. Chung MG, Chung JM, Chung MY, Epperson BK (2000) Spatial distribution of allozyme polymorphisms following clonal and sexual reproduction in populations of Rhus javanica (Anacardiaceae). Silvae Genetica, 48, 223-227.
14. Coyer JA, Diekmann OE, Serrao EA et al. (2004) Genetic differentiation of the seagrass, Zostera noltii, populations throughout its european, asian and african range. Marine Ecology Progress Series, 281, 51-62.
15. Dorken ME, Eckert CG (2001) Severely reduced sexual reproduction in northern populations of a clonal plant, Decodon verticillatus (Lythraceae). Journal of Ecology, 89, 339-350.
16. Doyle JJ, Doyle JL (1988) Natural interspecific hybridization in eastern North American Claytonia. American Journal of Botany, 75, 1238-1246.
17. Duarte CM, Sand-Jensen K (1990) Seagrass colonization: patch formation and patch growth in Cymodocea nodosa. Marine Ecology Progress Series, 65, 193-200.
18. Duarte CM, Sand-Jensen K (1996) Nutrient constraints on establishment from seed and on vegetative expansion of the Mediterranean seagrass Cymodocea nodosa. Aquatic Botany, 54, 279-286.
19. Ellstrand NC, Roose ML (1987) Patterns of genotypic diversity in clonal plant species. American Journal of Botany, 74, 123-131.
20. Epperson BK (2003) Geographical Genetics: Monographs in Population Biology. Princeton University Press, Princeton, New Jersey.
21. Eriksson O (1993) Dynamics of genets in clonal plants. Trends in Ecology & Evolution, 8, 313-316.
22. Eriksson O (1997) Clonal life histories and the evolution of seed recruitment. In: The Ecology and Evolution of Clonal Plants (eds de Kroon H, van Groenendael J), pp. 211-226. Backhuys Publishers, Leiden, The Netherlands.
23. Fenster CB, Vekemans X, Hardy OJ (2003) Quantifying gene flow from spatial genetic structure data in a metapopulation of Chamaecrista fasciculate (Leguminosae). Evolution, 57, 995-1007.
24. Gliddon C, Belhassen E, Gouyon PH (1987) Genetic neighborhoods in plants with diverse systems of mating and different patterns of growth. Heredity, 59, 29-32.
25. Hämmerli A, Reusch TBH (2003a) Inbreeding depression influences genet size distribution in a marine angiosperm. Molecular Ecology, 12, 619-629.
26. Hämmerli A, Reusch TBH (2003b) Genetic neighbourhood of clone structures in eelgrass meadows quantified by spatial autocorrelation of microsatellite markers. Heredity, 91, 448-455.
27. Harada Y, Iwasa Y (1996) Analyses of spatial patterns and population processes of clonal plants. Researches on Population Ecology, 38, 153-164.
28. Harada Y, Kawano S, Iwasa Y (1997) Probability of clonal identity: inferring the relative success of sexual versus clonal reproduction from spatial genetic patterns. Journal of Ecology, 85, 591-600.
29. Hardy OJ, Vekemans X (1999) Isolation by distance in a continuous population: reconciliation between spatial autocorrelation and population genetics models. Heredity, 83, 145-154.
30. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
31. Hemminga MA, Duarte CM (2000) Seagrass Ecology. Cambridge University Press, Cambridge.
32. Herben T, Hara T, Handicova V et al. (2002) Neighborhood effects and genetic structure in a clonal grass: the role of the spatial structure of the environment. Plant Species Biology, 16, 1-11.
33. Heuertz M, Vekemans X, Hausman F, Paladas M, Hardy OJ (2003) Estimating seed vs. pollen dispersal from spatial genetic structure in the common ash. Molecular Ecology, 12, 2483-2495.
34. Inglis GJ (2000) Variation in the recruitment behaviour of seagrass seeds: implications for population dynamics and resource management. Pacific Conservation Biology, 5, 251-259.
35. Loiselle BA, Sork VL, Nason JD, Graham C (1995) Spatial genetic structure of a tropical understory shrub. American Journal of Botany, 82, 1420-1425.
36. Lovett Doust L (1981) Population dynamics and local specialization in a clonal perennial (Rannunculus repens) I. The dynamics of ramets in contrasting habitats. Journal of Ecology, 69, 743-755.
37. Marbà N, Cebrian J, Enríquez S, Duarte CM (1994) Migration of large scale subaqueous bedforms measured using seagrasses (Cymodocea nodosa) as tracers. Limnology and Oceanography, 39, 126-133.
38. Marbà N, Duarte CM (1995) Coupling of seagrass (Cymodocea nodosa) patch dynamics to subaqueous dune migration. Journal of Ecology, 83, 381-389.
39. Marbà N, Duarte CM (1998) Rhizome enlongation and seagrass clonal growth. Marine Ecology Progress Series, 174, 269-280.
40. Orive M (1993) Effective population size in organisms with complex life-histories. Theoretical Population Biology, 44, 316-340.
41. Parks JC, Werth CR (1993) A Study of spatial features of clones in a population of Bracken fern, Pteridium aquilinum (Dennstaedtiaceae). American Journal of Botany, 80, 537-544.
42. Procaccini G, Mazzella L (1996) Genetic Variability and Reproduction in Two Mediterranean Seagrasses. Seagrass Biology: Proceedings of an International Workshop, pp. 85-92. Rottnest Island, Western Australia.
43. Prugnolle F, Choisy M, Théron A, Durand P, De Meeûs T (2004) Sex-specific correlation between heterozygosity and clone size in the trematode Schistosma mansoni. Molecular Ecology, 13, 2859-2864.
44. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
45. R Development Core Team (2004) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-00-3, URL http://www.R-project.org.
46. Reusch TBH, Hukriede W, Stam WT, Olsen JL (1999a) Differentiating between clonal growth and limited gene flow using spatial autocorrelation of microsatellites. Heredity, 83, 120-126.
47. Reusch TBH, Boström C, Stam WT, Olsen JL (1999b) An ancient eelgrass clone in the Baltic Sea. Marine Ecology Progress Series, 183, 301-304.
48. Reusch TBH, Stam WT, Olsen JL (2000) A microsatellite-based estimation of clonal diversity and population subdivision in Zostera marina, a marine flowering plant. Molecular Ecology, 9, 127-140.
49. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
50. Shimizu Y, Ando M, Sakai F (2002) Clonal structure of natural populations of Cryptomeria japonica growing at different positions on slopes, detected using RAPD markers. Biochemical Systematics and Ecology, 30, 733-748.
51. Sintes T, Marbà N, Duarte CM, Kendrick GA (2004) Nonlinear processes in seagrass colonisation explained by simple clonal growth rules. Oikos, 108, 165-175.
52. Stehlik I, Holderegger R (2000) Spatial genetic structure and clonal diversity of Anemone nemorosa in late successional deciduous woodlands of Central Europe. Journal of Ecology, 88, 424-435.
53. Suzuki JI, Herben T, Krahulec F, Hara T (1999) Size and spatial pattern of Festuca rubra genets in a mountain grassland: its relevance to genet establishment and dynamics. Journal of Ecology, 87, 942-954.
54. Terrados J (1993) Sexual reproduction and seed banks of Cymodocea nodosa (Ucria) Ascherson meadows on the southeast Mediterranean coast of Spain. Aquatic Botany, 46, 293-299.
55. Vekemans X, Hardy OJ (2004) New insights from fine-scale spatial genetic structure analyses in plant populations. Molecular Ecology, 13, 921-935.
56. Vidondo B, Duarte CM, Middelboe AL, Stefasen K, Lutzen T, Nielsen SL (1997) Dynamics of a landscape mosaic: size and age distributions, growth and demography of seagrass Cymodocea nodosa patches. Marine Ecology Progress Series, 158, 131-138.
57. Waycott M, Walker DI, James SH (1996) Genetic uniformity in Amphibolis antarctica, a dioecious seagrass. Heredity, 76, 578-585.
58. Weir BS (1990) Genetic Data Analysis. Sinauer Associates, Sunderland, Massachusetts.
59. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
60. Wright S (1977) Evolution and the Genetics of Populations. Vol. 4. Variability Within and Among Populations. University of Chicago Press, Chicago.
61. Ziegenhagen B, Bialozyt R, Kuhlenkamp V, Schulze I, Ulrich A, Wulf M (2003) Spatial patterns of maternal lineages and clones of Galium odoratum in a large ancient woodland: inferences about seedling recruitment. Journal of Ecology, 91, 578-586.