Genetic structure of the cyclic fossorial water vole (Arvicola terrestris): Landscape and demographic influences

Molecular Ecology

Volumn 14, Issue 9, 2005, Pages 2861-2871

  Berthier, K ^a   Galan, M ^a   Foltete J C ^b   Charbonnel, N ^a   Cosson, J F ^a  

^a CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

^b Diplômée   (France)

Author keywords

Barriers to gene flow; Demography; Fluctuating rodent populations; Isolation by distance; Landscape

Indexed keywords

ARVICOLA TERRESTRIS; MICROTUS RICHARDSONI; MURIDAE; RODENTIA;

MICROSATELLITE DNA; PRIMER DNA;

ANIMAL; ARTICLE; ARVICOLINAE; COMPARATIVE STUDY; ENVIRONMENT; FRANCE; GENETIC VARIABILITY; GENETICS; GENOTYPE; POPULATION DENSITY; POPULATION DYNAMICS; POPULATION GENETICS;

ANIMALS; ARVICOLINAE; DNA PRIMERS; ENVIRONMENT; FRANCE; GENETICS, POPULATION; GENOTYPE; MICROSATELLITE REPEATS; POPULATION DENSITY; POPULATION DYNAMICS; VARIATION (GENETICS);

EID: 24944570165     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02636.x     Document Type: Article

References (60)

1. Aars J, Ims RA, Liu HP, Mulvey M, Smith MH (1998) Bank voles in linear habitats show restricted gene flow as revealed by mitochondrial DNA (mtDNA). Molecular Ecology, 7, 1383-1389.
2. Andreassen HP, Hertzberg K, Ims RA (1998) Space-use responses to habitat fragmentation and connectivity in the root vole Microtus oeconomus. Ecology, 79, 1223-1235.
3. Arnaud JF (2003) Metapopulation genetic structure and migration pathways in the land snail Helix aspersa: influence of landscape heterogeneity. Landscape Ecology, 18, 333-346.
4. Beaumont MA (1999) Detecting population expansion and decline using microsatellites. Genetics, 153, 2013-2029.
5. Belkhir K et al. (2001) GENETIX, logiciel sous Windows'™ pour la génétique des populations. Laboratoire Genome, Populations, Interactions, CNRS UNR 5000, Université de Montpellier II, Montpellier, France.
6. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B, 57, 289-300.
7. Bowen B (1982) Temporal dynamics of microgeographic structure of genetic variation in Microtus californicus. Journal of Mammalogy, 63, 625-638.
8. Brouat C, Sennedot F, Audiot P, Leblois R, Rasplus J-Y (2003) Finescale genetic structure of two carabid species with contrasted levels of habitat specialization. Molecular Ecology, 12, 1731-1745.
9. Corander J, Waldmann P, Sillanpaa MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367-374.
10. Cornuet J-M, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
11. Coulon A, Cosson JF, Angibault JM et al. (2004) Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology, 13, 2841-2850.
12. Danielson BJ, Hubbard MW (2000) The influence of corridors on the movement behavior of individual Peromyscus polionotus in experimental landscapes. Landscape Ecology, 15, 323-331.
13. Ehrich D, Jorde PE, Krebs CJ et al. (2001) Spatial structure of lemming populations (Dicrostonyx groenlandicus) fluctuating in density. Molecular Ecology, 10, 481-495.
14. Estoup A, Wilson IJ, Sullivan C, Cornuet J-M, Moritz C (2001) Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus. Genetics, 159, 1671-1687.
15. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
16. Giraudoux P, Pradier B, Delattre P et al. (1995) Estimation of water vole abundance by using surface indices. Acta Theriologica, 40 (1), 77-96.
17. Giraudoux P, Delattre P, Habert M et al. (1997) Population dynamics of fossorial water vole (Arvicola terrestris scherman): a land use and landscape perspective. Agriculture, Ecosystems and Environment, 66, 47-60.
18. Goudet J (1995) FSTAT, version 1.2: a computer program to calculate F-statistics. Journal of Heredity, 86 (6), 485-486.
19. Hardy OJ, Vekemans X (1999) Isolation-by-distance in a continuous population: reconciliation between spatial autocorrelation analysis and population genetics models. Heredity, 83, 145-154.
20. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
21. Hudson PJ, Dobson AP, Newborn D (1998) Prevention of population cycle by parasite removal. Science, 282, 2256-2258.
22. Koenig WD, Van Vuren D, Hooge PN (1996) Detectability, philopatry, and the distribution of dispersal distances in vertebrates. Trends in Ecology & Evolution, 11, 514-517.
23. Lambin X, Elston DA, Petty SJ, MacKinnon JL (1998) Spatial asynchrony and periodic travelling waves in cyclic populations of field voles. Proceedings of the Royal Society London. Series B, Biological Sciences, 265, 1491-1496.
24. Lambin X, Krebs CJ, Moss R, Stenseth NC, Yoccoz NG (1999) Population cycle and parasitism. Science, 286, 2425a.
25. Leblois R, Estoup A, Rousset F (2003) Influence of mutational and sampling factors on the estimation of demographic parameters in a 'continuous' population under isolation-by-distance. Molecular Biology and Evolution, 20, 491-502.
26. Leblois R, Rousset F, Estoup A (2004) Influence of spatial and temporal heterogeneities on the estimation of demographic parameters in a continuous population using individual microsatellite data. Genetics, 166 (2), 1081-1092.
27. Legendre P, Fortin MJ (1989) Spatial pattern and ecological analysis. Vegetatio, 80, 107-138.
28. Legendre P, Vaudor A (1991) LE PROGICIEL R. Analyse Multidimensionnelle et Spatiale. Université de Montréal, http://www.fas.umontreal.ca/ BIOL/Casgrain/R/index.html.
29. Luikart G, Cornuet JM (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conservation Biology, 12, 228-237.
30. Mackinnon JL, Petty SJ, Elston DA et al. (2001) Scale invariant spatio-temporal patterns of field vole density. Journal of Animal Ecology, 70, 101-111.
31. Meylan A (1977) Fossorial form of the water vole, Arvicola terrestris (L.), in Europe. EPPO Bulletin, 7, 209-221.
32. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
33. Piry S, Luikart G, Cornuet JM (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90, 502-503.
34. Plante Y, Boag PT, Bradley NW (1989) Microgeographic variation in mitochondrial DNA of meadow voles (Microtus pennsylvanicus) in relation to population density. Evolution, 43, 1522-1537.
35. Queney G, Ferrand N, Marchandeau S et al. (2000) Absence of a genetic bottleneck in a wild rabbit (Oryctolagus cuniculus) population exposed to a severe viral epizootic. Molecular Ecology, 9, 1253-1264.
36. Raymond M, Rousset F (1995) GENEPOP (version 1.2): Population genetics software for exact tests and ecumenism. Journal of Heredity, 86, 248-249.
37. Roberts MG, Dobson AP, Arneberg P et al. (2002) Parasite community ecology and biodiversity. In: The Ecology of Wildlife Diseases (eds Hudson PJ, Rizzoli A, Grenfell BT, Heesterbeek H, Dobson A), pp. 63-82. Oxford University Press, Oxford, UK.
38. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation-by-distance. Genetics, 145, 1219-1228.
39. Rousset F (2000) Genetic differentiation between individuals. Journal of Evolutionary Biology, 13, 58-62.
40. Rousset F (2003) Inferences from spatial population genetics. In: Handbook of Statistical Genetics (eds Balding D, Bishop M, Cannings C), 2nd edn, pp. 681-712. John Wiley & Sons, Chichester, UK.
41. Rueness EK, Stenseth NC, O'Donoghue M et al. (2003) Ecological and genetic spatial structuring in the Canadian lynx. Nature, 425, 69-72.
42. Saucy F (1988) Dynamique de population, dispersion et organisation sociale de la forme fouisseuse du campagnol terrestre (Arvicola terrestris scherman). Thèse de doctorat, Université de Neuchâtel, Neuchâtel, Switzerland.
43. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN: a software for population genetics data analysis, version 2.000. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland.
44. Sherrat TN, Lambin X, Petty SJ et al. (2000) Use coupled oscillator models to understand synchrony and travelling waves in populations of the field vole, microtus agrestis, in northern England. Journal of Applied Ecology, 37, 148-158.
45. Slatkin M (1993) Isolation-by-distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
46. Slatkin M (1994) Gene flow and population structure. In: Ecological Genetics (eds Real LA), pp. 3-17. Princeton University Press, Princeton, New Jersey.
47. Stacy JE, Jorde PE, Steen H et al. (1997) Lack of concordance between mtDNA gene flow and population density fluctuations in the bank vole. Molecular Ecology, 6, 751 -759.
48. Stenseth NC, Falck W, Chan KS et al. (1998) From patterns to processes: phase and density dependencies in the Canadian lynx cycle. Proceedings of the National Academy of Sciences, USA, 95, 15430-15435.
49. Stenseth NC, Chan KS, Tong H et al. (1999) Common dynamic structure of Canada lynx populations within three climatic regions. Science, 285, 1071-1073.
50. Stenseth NC, Ehrich D, Rueness EK et al. (2004) The effect of climatic forcing on population synchrony and genetic structuring of the Canadian lynx. Proceedings of the National Academy of Sciences, USA, 101, 6056-6061.
51. Stewart WA, Piertney SB, Dallas JF (1998) Isolation and characterization of highly polymorphic microsatellites in the water vole, Arvicola terrestris. Molecular Ecology, 7, 1258-1259.
52. Stow AJ, Sunnucks P, Briscoe DA, Gardner MG (2001) The impact of habitat fragmentation on dispersal of Cunningham's skink (Egernia cunninghami): evidence from allelic and genotypic analyses of microsatellites. Molecular Ecology, 10, 867-878.
53. Telfer S, Piertney SB, Dallas JF et al. (2003) Parentage assignment detects frequent and large-scale dispersal in water voles. Molecular Ecology, 12, 1939-1949.
54. Vos CC, Antonisse-De Jong AG, Goedhart PW, Smulders MJM (2001) Genetic similarity as a measure for connectivity between fragmented populations of the moor frog (Rana arvalis). Heredity, 86, 598-608.
55. Weber JM, Aubry S, Ferrari N et al. (2002) Population changes of different predators during a water vole cycle in a central European mountainous habitat. Ecography, 25, 95-101.
56. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
57. Whitlock MC (1992) Temporal fluctuations in demographic parameters and the genetic variance among populations. Evolution, 46, 608-615.
58. ST ≠ 1/(4Nm ± 1). Heredity, 52, 117-125.
59. Wright S (1943) Isolation-by-distance. Genetics, 28, 114-138.
60. Wright S (1969) Evolution and the Genetics of Populations, vol. 2, The Theory of Gene frequencies. University of Chicago Press, Chicago.