-
1
-
-
0001643728
-
Condensation of arabinose 5-phosphate and phosphorylenol pyruvate by 2-keto-3-deoxyphosphooctonic acid synthetase
-
Levin, D. H., and Racker, E. (1959) Condensation of arabinose 5-phosphate and phosphorylenol pyruvate by 2-keto-3-deoxyphosphooctonic acid synthetase, J. Biol. Chem. 234, 2532-2539.
-
(1959)
J. Biol. Chem.
, vol.234
, pp. 2532-2539
-
-
Levin, D.H.1
Racker, E.2
-
2
-
-
0035896523
-
Substrate and metal complexes of 3-deoxy-D-manno-octulosonate 8-phosphate synthase from Aquifex aeolicus at 1.9 Å resolution: Implications for the condensation mechanism
-
Duewel, H. S., Radaev, S., Wang, J., Woodard, R. W., and Gatti, D. L. (2001) Substrate and metal complexes of 3-deoxy-D-manno-octulosonate 8-phosphate synthase from Aquifex aeolicus at 1.9 Å resolution: implications for the condensation mechanism, J. Biol. Chem. 276, 8393-8402.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 8393-8402
-
-
Duewel, H.S.1
Radaev, S.2
Wang, J.3
Woodard, R.W.4
Gatti, D.L.5
-
3
-
-
0035951088
-
Structures of Aquifex aeolicus KDO8P synthase in complex with R5P and PEP, and with a bisubstrate inhibitor: Role of active site water in catalysis
-
Wang, J., Duewel, H. S., Woodard, R. W., and Gatti, D. L. (2001) Structures of Aquifex aeolicus KDO8P synthase in complex with R5P and PEP, and with a bisubstrate inhibitor: role of active site water in catalysis, Biochemistry 40, 15676-15683.
-
(2001)
Biochemistry
, vol.40
, pp. 15676-15683
-
-
Wang, J.1
Duewel, H.S.2
Woodard, R.W.3
Gatti, D.L.4
-
4
-
-
0035967515
-
Crystal structures of KDOP synthase in its binary complexes with the substrate phosphoenolpyruvate and with a mechanism-based inhibitor
-
Asojo, O., Friedman, J., Adir, N., Belakhov, V., Shoham, Y., and Baasov, T. (2001) Crystal structures of KDOP synthase in its binary complexes with the substrate phosphoenolpyruvate and with a mechanism-based inhibitor, Biochemistry 40, 6326-6334.
-
(2001)
Biochemistry
, vol.40
, pp. 6326-6334
-
-
Asojo, O.1
Friedman, J.2
Adir, N.3
Belakhov, V.4
Shoham, Y.5
Baasov, T.6
-
5
-
-
0024240284
-
3-Deoxy-D-manno-octulosonate-8-phosphate synthase catalyzes the C-O bond cleavage of phosphoenolpyruvate
-
Hedstrom, L., and Abeles, R. (1988) 3-Deoxy-D-manno-octulosonate-8- phosphate synthase catalyzes the C-O bond cleavage of phosphoenolpyruvate, Biochem. Biophys. Res. Commun. 157, 816-820.
-
(1988)
Biochem. Biophys. Res. Commun.
, vol.157
, pp. 816-820
-
-
Hedstrom, L.1
Abeles, R.2
-
6
-
-
0025285857
-
Biochemistry of endotoxins
-
Raetz, C. R. (1990) Biochemistry of endotoxins, Annu. Rev. Biochem. 59, 129-170.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 129-170
-
-
Raetz, C.R.1
-
8
-
-
0035097138
-
Aquifex aeolicus 3-deoxy-D-manno-2-octulosonic acid 8-phosphate synthase: A new class of KDO 8-P synthase?
-
Birck, M. R., and Woodard, R. W. (2001) Aquifex aeolicus 3-deoxy-D-manno-2-octulosonic acid 8-phosphate synthase: a new class of KDO 8-P synthase?, J. Mol. Evol. 52, 205-214.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 205-214
-
-
Birck, M.R.1
Woodard, R.W.2
-
9
-
-
0034725580
-
A metal bridge between two enzyme families. 3-Deoxy-D-manno-octulosonate 8-phosphate synthase from Aquifex aeolicus requires a divalent metal for activity
-
Duewel, H. S., and Woodard, R. W. (2000) A metal bridge between two enzyme families. 3-Deoxy-D-manno-octulosonate 8-phosphate synthase from Aquifex aeolicus requires a divalent metal for activity, J. Biol. Chem. 275, 22824-22831.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 22824-22831
-
-
Duewel, H.S.1
Woodard, R.W.2
-
10
-
-
3142723191
-
Functional and biochemical characterization of a recombinant Arabidopsis thaliana 3-deoxy-D-manno-octulosonate 8-phosphate synthase
-
Wu, J., Patel, M. A., Sundaram, A. K., and Woodard, R. W. (2004) Functional and biochemical characterization of a recombinant Arabidopsis thaliana 3-deoxy-D-manno-octulosonate 8-phosphate synthase, Biochem. J. 381, 185-193.
-
(2004)
Biochem. J.
, vol.381
, pp. 185-193
-
-
Wu, J.1
Patel, M.A.2
Sundaram, A.K.3
Woodard, R.W.4
-
11
-
-
0033600866
-
Functional and biochemical characterization of a recombinant 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase from the hyperthermophilic bacterium Aquifex aeolicus
-
Duewel, H. S., Sheflyan, G. Y., and Woodard, R. W. (1999) Functional and biochemical characterization of a recombinant 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase from the hyperthermophilic bacterium Aquifex aeolicus, Biochem. Biophys. Res. Commun. 263, 346-351.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.263
, pp. 346-351
-
-
Duewel, H.S.1
Sheflyan, G.Y.2
Woodard, R.W.3
-
12
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
13
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams, P. D., Pannu, N. S., Read, R. J., and Brunger, A. T. (1997) Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement, Proc. Natl. Acad. Sci. U.S.A. 94, 5018-5023.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brunger, A.T.4
-
14
-
-
0034084540
-
Objective comparison of protein structures: Error-scaled difference distance matrices
-
Schneider, T. R. (2000) Objective comparison of protein structures: error-scaled difference distance matrices, Acta Crystallogr., Sect. D 56 (Pt 6), 714-721.
-
(2000)
Acta Crystallogr., Sect. D
, vol.56
, Issue.PART 6
, pp. 714-721
-
-
Schneider, T.R.1
-
15
-
-
0036008503
-
A genetic algorithm for the identification of conformationally invariant regions in protein molecules
-
Schneider, T. R. (2002) A genetic algorithm for the identification of conformationally invariant regions in protein molecules, Acta Crystallogr., Sect. D 58, 195-208.
-
(2002)
Acta Crystallogr., Sect. D
, vol.58
, pp. 195-208
-
-
Schneider, T.R.1
-
16
-
-
0033106268
-
Remarks about protein structure precision
-
Cruickshank, D. W. (1999) Remarks about protein structure precision, Acta Crystallogr., Sect. D 55 (Pt 3), 583-601.
-
(1999)
Acta Crystallogr., Sect. D
, vol.55
, Issue.PART 3
, pp. 583-601
-
-
Cruickshank, D.W.1
-
17
-
-
0014261435
-
The enzymatic assay of pyruvic and lactic acids. A definitive procedure
-
Hadjivassiliou, A. G., and Rieder, S. V. (1968) The enzymatic assay of pyruvic and lactic acids. A definitive procedure, Clin. Chim. Acta 19, 357-361.
-
(1968)
Clin. Chim. Acta
, vol.19
, pp. 357-361
-
-
Hadjivassiliou, A.G.1
Rieder, S.V.2
-
18
-
-
0028905817
-
Analysis of enzyme progress curves by nonlinear regression
-
Duggleby, R. G. (1995) Analysis of enzyme progress curves by nonlinear regression, Methods Enzymol. 249, 61-90.
-
(1995)
Methods Enzymol.
, vol.249
, pp. 61-90
-
-
Duggleby, R.G.1
-
19
-
-
0026726753
-
Mechanistic studies of 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase from Escherichia coli
-
Kohen, A., Jakob, A., and Baasov, T. (1992) Mechanistic studies of 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase from Escherichia coli, Eur. J. Biochem. 208, 443-449.
-
(1992)
Eur. J. Biochem.
, vol.208
, pp. 443-449
-
-
Kohen, A.1
Jakob, A.2
Baasov, T.3
-
20
-
-
0027376764
-
Catalytic mechanism of 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase. The use of synthetic analogues to probe the structure of the putative reaction intermediate
-
Baasov, T., Sheffer-Dee-Noor, S., Kohen, A., Jakob, A., and Belakhov, V. (1993) Catalytic mechanism of 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase. The use of synthetic analogues to probe the structure of the putative reaction intermediate. Eur. J. Biochem. 217, 991-999.
-
(1993)
Eur. J. Biochem.
, vol.217
, pp. 991-999
-
-
Baasov, T.1
Sheffer-Dee-Noor, S.2
Kohen, A.3
Jakob, A.4
Belakhov, V.5
-
21
-
-
0032541962
-
Catalytic mechanism of Kdo8P synthase: Transient kinetic studies and evaluation of a putative reaction intermediate
-
Liang, P. H., Lewis, J., Anderson, K. S., Kohen, A., D'Souza, F. W., Benenson, Y., and Baasov, T. (1998) Catalytic mechanism of Kdo8P synthase: transient kinetic studies and evaluation of a putative reaction intermediate, Biochemistry 37, 16390-16399.
-
(1998)
Biochemistry
, vol.37
, pp. 16390-16399
-
-
Liang, P.H.1
Lewis, J.2
Anderson, K.S.3
Kohen, A.4
D'Souza, F.W.5
Benenson, Y.6
Baasov, T.7
-
22
-
-
0029015263
-
Overproduction and one-step purification of Escherichia coli 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase and oxygen transfer studies during catalysis using isotopic-shifted heteronuclear NMR
-
Dotson, G. D., Dua, R. K., Clemens, J. C., Woolen, E. W., and Woodard, R. W. (1995) Overproduction and one-step purification of Escherichia coli 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase and oxygen transfer studies during catalysis using isotopic-shifted heteronuclear NMR. J. Biol. Chem. 270, 13698-13705.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 13698-13705
-
-
Dotson, G.D.1
Dua, R.K.2
Clemens, J.C.3
Woolen, E.W.4
Woodard, R.W.5
-
23
-
-
0027376956
-
Stereochemistry of 3-deoxyoctulosonate 8-phosphate synthase
-
Dotson, G. D., Nanjappan, P., Reily, M. D., and Woodard, R. W. (1993) Stereochemistry of 3-deoxyoctulosonate 8-phosphate synthase, Biochemistry 32, 12392-12397.
-
(1993)
Biochemistry
, vol.32
, pp. 12392-12397
-
-
Dotson, G.D.1
Nanjappan, P.2
Reily, M.D.3
Woodard, R.W.4
-
24
-
-
0029902679
-
Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
-
Kuzmic, P. (1996) Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase, Anal.Biochem. 237, 260-273.
-
(1996)
Anal.Biochem.
, vol.237
, pp. 260-273
-
-
Kuzmic, P.1
-
25
-
-
33947472850
-
A Schematic method of deriving the rate laws for enzyme-catalyzed reactions
-
King, E. L., and Altman, C. (1956) A Schematic method of deriving the rate laws for enzyme-catalyzed reactions, J. Phys. Chem. 60, 1375-1378.
-
(1956)
J. Phys. Chem.
, vol.60
, pp. 1375-1378
-
-
King, E.L.1
Altman, C.2
-
27
-
-
0017370629
-
An automatic method for deriving steady-state rate equations
-
Cornish-Bowden, A. (1977) An automatic method for deriving steady-state rate equations, Biochem. J. 165, 55-59.
-
(1977)
Biochem. J.
, vol.165
, pp. 55-59
-
-
Cornish-Bowden, A.1
-
28
-
-
50549159930
-
The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations
-
Cleland, W. W. (1963) The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations, Biochim. Biophys. Acta 67, 104-137.
-
(1963)
Biochim. Biophys. Acta
, vol.67
, pp. 104-137
-
-
Cleland, W.W.1
-
29
-
-
0027370376
-
GEPAS1: A software package for modelling the dynamics, steady states and control of biochemical and other systems
-
Mendes, P. (1993) GEPAS1: a software package for modelling the dynamics, steady states and control of biochemical and other systems, Comput. Appl. Biosci. 9, 563-571.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 563-571
-
-
Mendes, P.1
-
30
-
-
0001811061
-
ODEPACK: A systematized collection of ODE solvers
-
(Stepleman, R. S., Ed.) , North-Holland, Amsterdam
-
Hindmarsh, A. C. (1983) ODEPACK: a systematized collection of ODE solvers, in Scientific Computing (Stepleman, R. S., Ed.) pp 55-64, North-Holland, Amsterdam.
-
(1983)
Scientific Computing
, pp. 55-64
-
-
Hindmarsh, A.C.1
-
31
-
-
0027219268
-
Stereochemistry of KDO8P synthase. An efficient synthesis of the 3-fluoro analogs of KDO8P
-
Kohen, A., Berkovich, R., Belakhov, V., and Baasov, T. (1993) Stereochemistry of KDO8P synthase. An efficient synthesis of the 3-fluoro analogs of KDO8P, Bioorg. Med. Chem. Lett. 3, 1577-1582.
-
(1993)
Bioorg. Med. Chem. Lett.
, vol.3
, pp. 1577-1582
-
-
Kohen, A.1
Berkovich, R.2
Belakhov, V.3
Baasov, T.4
-
32
-
-
84952126648
-
Validation of regression models: Methods and examples
-
Snee, R. D. (1977) Validation of regression models: methods and examples, Technometrics 19 (4), 415-428.
-
(1977)
Technometrics
, vol.19
, Issue.4
, pp. 415-428
-
-
Snee, R.D.1
-
33
-
-
84950461478
-
Estimating the error rate of a prediction rule: Improvement on cross-validation
-
Efron, B. (1983) Estimating the error rate of a prediction rule: improvement on cross-validation, J. Am. Stat. Assoc. 78, 316-331.
-
(1983)
J. Am. Stat. Assoc.
, vol.78
, pp. 316-331
-
-
Efron, B.1
-
36
-
-
0030574065
-
Molecular control analysis: Control within proteins and molecular processes
-
Brown, G. C., Westerhoff, H. V., and Kholodenko, B. N. (1996) Molecular control analysis: control within proteins and molecular processes, J. Theor. Biol. 182, 389-396.
-
(1996)
J. Theor. Biol.
, vol.182
, pp. 389-396
-
-
Brown, G.C.1
Westerhoff, H.V.2
Kholodenko, B.N.3
-
38
-
-
0038333468
-
Mechanistic insight into 3-deoxy-D-manno-octulosonate-8-phosphate synthase and 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase utilizing phosphorylated monosaccharide analogues
-
Howe, D. L., Sundaram, A. K., Wu, J., Gatti, D. L., and Woodard, R. W. (2003) Mechanistic insight into 3-deoxy-D-manno-octulosonate-8-phosphate synthase and 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase utilizing phosphorylated monosaccharide analogues, Biochemistry 42, 4843-4854.
-
(2003)
Biochemistry
, vol.42
, pp. 4843-4854
-
-
Howe, D.L.1
Sundaram, A.K.2
Wu, J.3
Gatti, D.L.4
Woodard, R.W.5
-
39
-
-
0022978194
-
Site-directed mutagenesis reveals role of mobile arginine residue in lactate dehydrogenase catalysis
-
Clarke, A. R., Wigley, D. B., Chia, W. N., Barstow, D., Atkinson, T., and Holbrook, J. J. (1986) Site-directed mutagenesis reveals role of mobile arginine residue in lactate dehydrogenase catalysis, Nature 324, 699-702.
-
(1986)
Nature
, vol.324
, pp. 699-702
-
-
Clarke, A.R.1
Wigley, D.B.2
Chia, W.N.3
Barstow, D.4
Atkinson, T.5
Holbrook, J.J.6
-
40
-
-
0037561915
-
Structural framework for catalysis and regulation in ribulose-1,5- bisphosphate carboxylase/ oxygenase
-
Andersson, I., and Taylor, T. C. (2003) Structural framework for catalysis and regulation in ribulose-1,5-bisphosphate carboxylase/ oxygenase, Arch. Biochem. Biophys. 414, 130-140.
-
(2003)
Arch. Biochem. Biophys.
, vol.414
, pp. 130-140
-
-
Andersson, I.1
Taylor, T.C.2
-
41
-
-
0036290392
-
A functional role for a flexible loop containing Glu182 in the class II fructose-1,6-bisphosphate aldolase from Escherichia coli
-
Zgiby, S., Plater, A. R., Bates, M. A., Thomson, G. J., and Berry, A. (2002) A functional role for a flexible loop containing Glu182 in the class II fructose-1,6-bisphosphate aldolase from Escherichia coli, J. Mol. Biol. 315, 131-140.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 131-140
-
-
Zgiby, S.1
Plater, A.R.2
Bates, M.A.3
Thomson, G.J.4
Berry, A.5
-
42
-
-
0025276041
-
Stabilization of a reaction intermediate as a catalytic device: Definition of the functional role of the flexible loop in triosephosphate isomerase
-
Pompliano, D. L., Peyman, A., and Knowles, J. R. (1990) Stabilization of a reaction intermediate as a catalytic device: definition of the functional role of the flexible loop in triosephosphate isomerase, Biochemistry 29, 3186-3194.
-
(1990)
Biochemistry
, vol.29
, pp. 3186-3194
-
-
Pompliano, D.L.1
Peyman, A.2
Knowles, J.R.3
-
43
-
-
0037623785
-
Binding of the natural substrates and products to KDO8P synthase: 31P and 13C solution NMR characterization
-
Kaustov, L., Baasov, T., and Schmidt, A. (2003) Binding of the natural substrates and products to KDO8P synthase: 31P and 13C solution NMR characterization, Bioorg. Chem. 31, 306-321.
-
(2003)
Bioorg. Chem.
, vol.31
, pp. 306-321
-
-
Kaustov, L.1
Baasov, T.2
Schmidt, A.3
|