Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome reveals its chaperone action

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 34, 2005, Pages 12017-12022

  Baram, David ^a   Pyetan, Erez ^a   Sittner, Assa ^a   Auerbach Nevo, Tamar ^a   Bashan, Anat ^a   Yonath, Ada ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

Deinococcus radiodurans; Nascent chain; Protein folding; Ribosomal crystallography; Ribosomal exit tunnel

Indexed keywords

BINDING PROTEIN; CHAPERONE; TRIGGER FACTOR BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BINDING COMPETITION; CONFORMATIONAL TRANSITION; DEINOCOCCUS RADIODURANS; EUBACTERIUM; HYDROPHOBICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN MOTIF; PROTEIN STRUCTURE; RIBOSOME; RIBOSOME SUBUNIT;

BACTERIAL PROTEINS; CLONING, MOLECULAR; CRYSTALLIZATION; DEINOCOCCUS; DNA PRIMERS; MODELS, MOLECULAR; MOLECULAR CHAPERONES; PEPTIDYLPROLYL ISOMERASE; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RIBOSOMAL PROTEINS; RIBOSOMES;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS;

EID: 24744435971     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0505581102     Document Type: Article

References (32)

1. Anfinsen, C. B. (1973) Science 181, 223-230.
2. Rospert, S. (2004) Curr. Biol. 14, R386-R388.
3. Frydman, J. (2001) Annu. Rev. Biochem. 70, 603-647.
4. Hartl, F. U. & Hayer-Hartl, M. (2002) Science 295, 1852-1858.
5. Thirumalai, D. & Lorimer, G. H. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 245-269.
6. Gottesman, M. E. & Hendrickson, W. A. (2000) Curr. Opin. Microbiol 3, 197-202.
7. Maier, T., Ferbitz, L., Deuerling, E. & Ban, N. (2005) Curr. Opin. Struct. Biol. 15, 204-212.
8. Deuerling, E., Schulze-Specking, A., Tomoyasu, T., Mogk, A. & Bukau, B. (1999) Nature 400, 693-696.
9. Patzelt, H., Kramer, G., Rauch, T., Schonfeld, H. J., Bukau, B. & Deuerling, E. (2002) Biol. Chem. 383, 1611-1619.
10. Blaha, G., Wilson, D. N., Stoller, G., Fischer, G., Willumeit, R. & Nierhaus, K. H. (2003) J. Mol Biol. 326, 887-897.
11. Kramer, G., Rauch, T., Rist, W., Vorderwulbecke, S., Patzelt, H., Schulze-Specking, A., Ban, N., Deuerling, E. & Bukau, B. (2002) Nature 419, 171-174.
12. Harms, J., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F. & Yonath, A. (2001) Cell 107, 679-688.
13. Baram, D. & Yonath, A. (2005) FEBS Lett. 579, 948-954.
14. Kristensen, O. & Gajhede, M. (2003) Structure (Cambridge) 11, 1547-1556.
15. Ferbitz, L., Maier, T., Patzelt, H., Bukau, B., Deuerling, E. & Ban, N. (2004) Nature 431, 590-596.
16. Qiagen (2000) A Handbook for High Level Expression and Purification of 6xHis-tagged Proteins (Qiagen, Valencia, CA).
17. Auerbach-Nevo, T., Zarivach, R., Peretz, M. & Yonath, A. (2005) Acta Crystallogr. D 61, 713-719.
18. Otwinowski, Z. & Minor, W. (1997) Methods Enzymol. 276, 307-326.
19. Bailey, S. (1994) Acta Crystallogr. D 50, 760-763.
20. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta Crystallogr. D 54, 905-921.
21. Ludlam, A. V., Moore, B. A. & Xu, Z. (2004) Proc. Natl. Acad. Sci. USA 101, 13436-13441.
22. Genevaux, P., Keppel, F., Schwager, F., Langendijk-Genevaux, P. S., Hartl, F. U. & Georgopoulos, C. (2004) EMBO Rep. 5, 195-200.
23. Schaffitzel, E., Rudiger, S., Bukau, B. & Deuerling, E. (2001) Biol Chem. 382, 1235-1243.
24. Kramer, G., Rutkowska, A., Wegrzyn, R. D., Patzelt, H., Kurz, T. A., Merz, F., Rauch, T., Votderwulbecke, S., Deuerling, E. & Bukau, B. (2004) J. Bacteriol. 186, 3777-3784.
25. Agashe, V. R., Guha, S., Chang, H. C., Genevaux, P., Hayer-Hartl, M., Stemp, M., Georgopoulos, C., Hartl, F. U. & Barrai, J. M. (2004) Cell 117, 199-209.
26. Patzelt, H., Rudiger, S., Brehmer, D., Kramer, G., Vorderwulbecke, S., Schaffitzel, E., Waitz, A., Hesterkamp, T., Dong, L., Schneider-Mergener, J., et al. (2001) Proc. Natl. Acad. Sci. USA 98, 14244-14249.
27. Hesterkamp, T., Hauser, S., Lutcke, H. & Bukau, B. (1996) Proc. Natl. Acad. Sci. USA 93, 4437-4441.
28. Woolhead, C. A., McCormick, P. J. & Johnson, A. E. (2004) Cell 116, 725-736.
29. Eisenstein, M., Hardesty, B., Odom, O. W., Kudlicki, W., Kramer, G., Arad, T., Franceschi, F. & Yonath, A. (1994) in Supramolecular Structure and Function, ed. Pifat, G. (Balaban Press, Rehovot, Israel), Vol. 4, pp. 213-246.
30. Hardesty, B., Kudlicki, W., Odom, O. W., Zhang, T., McCarthy, D. & Kramer, G. (1995) Biochem. Cell Biol. 73, 1199-1207.
31. Gilbert, R. J., Fucini, P., Connell, S., Fuller, S. D., Nierhaus, K. H., Robinson, C. V., Dobson, C. M. & Stuart, D. I. (2004) Mol. Cell 14, 57-66.
32. Maier, R., Eckert, B., Scholz, C., Lilie, H. & Schmid, F. X. (2003) J. Mol. Biol. 326, 585-592.