GenColors: Accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness

Bioinformatics

Volumn 21, Issue 18, 2005, Pages 3669-3671

  Romualdi, Alessandro ^a   Siddiqui, Roman ^a   Glöckner, Gernot ^a   Lehmann, Rüdiger ^a   Sühnel, Jürgen ^a  

^a FRITZ LIPMANN INSTITUTE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BORRELIA GARINII; COMPARATIVE STUDY; COMPUTER PROGRAM; EMBL NUCLEOTIDE SEQUENCE DATABASE; GENBANK; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC DATABASE; GENOME ANALYSIS; INFORMATION PROCESSING; INTERNET; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; QUALITATIVE ANALYSIS; SEQUENCE ANALYSIS; SWISS-PROT; SYNTENY;

BORRELIA GARINII; PROKARYOTA;

EID: 24644523610     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti606     Document Type: Article

References (15)

1. Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
2. Bentley,S.D. and Parkhill,J. (2004) Comparative genomic structure of prokaryotes. Annu. Rev. Genet., 38, 771-791.
3. Bernal,A. et al. (2001) Genomes OnLine Database (GOLD): A monitor of genome projects world-wide. Nucleic Acids Res., 29, 126-127.
4. Berriman,M. and Rutherford.K. (2003) Viewing and annotating sequence data with Artemis. Brief. Bioinformatics, 4, 124-132.
5. Boeckmann,B. et al. (2003) The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
6. Bonfield,J.K. et al. (1995) A new DNA sequence assembly program. Nucleic Acids Res., 23, 4992-4999.
7. Chaudhuri,R.R. et al. (2004) coliBASE: An online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Res., 32, D296-D299.
8. Ewing,B. and Green,P. (1998) Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res., 8, 186-194.
9. Glöckner,G. et al. (2004) Comparative analysis of the Borrelia garinii genome. Nucleic Acids Res., 32, 6038-6046.
10. Hulo,N. et al. (2004) Recent improvements to the PROSITE database. Nucleic Acids Res., 32, D134-D137.
11. Mulder,N.J. et al. (2005) InterPro, progress and status in 2005. Nucleic Acids Res., 33, D201-D205.
12. Rice,P. et al. (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
13. Stajich,J.E. et al. (2002) The Bioperl Toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
14. Tatusov,R.L. et al. (1997) A genomic perspective on protein families. Science, 278, 631-637.
15. The Gene Ontology Consortium (2000) Gene Ontology: Tool for the unification of biology. Nat. Genet., 25, 25-29.