ChromoViz: Multimodal visualization of gene expression data onto chromosomes using scalable vector graphics

Bioinformatics

Volumn 20, Issue 7, 2004, Pages 1191-1192

  Kim, Jihoon ^a   Chung, Hee Joon ^a   Park, Chan Hee ^a   Park, Woong Yang ^a   Kim, Ju Han ^a  

^a Seoul National University College of Medicine   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CELL DIFFERENTIATION; CHROMOSOME ANALYSIS; CHROMOSOME MAP; COMPUTER GRAPHICS; COMPUTER PROGRAM; DATA ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC DATABASE; INFORMATION PROCESSING; INTERNET; PRIORITY JOURNAL; STEM CELL;

EID: 2442690357     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth052     Document Type: Article

References (8)

1. Ihaka,R. and Gentleman,R. (1996) R: a language of data analysis and graphics. J. Comput. Graphic Stat., 5, 299-314.
2. Lercher,M.J., Urrutia,A. and Hurst,L.D. (2002) Clustering of house-keeping genes provides a unified model of gene order in the human genome. Nat. Genet., 31, 180-183.
3. Mu,D., Chen,L., Zhang,X., See, L.H., Koch,C.M., Yen,C., Tong,J.J., Spiegel,L., Nguyen,K.C., Servoss,A. et al. (2003) Genomic amplification and oncogenic properties of the KCNK9 potassium channel gene. Cancer Cell, 3, 297-302.
4. Pollack,J.R., Sørlie,T., Perou,C.M., Rees,C.A., Jeffrey,S.S., Lonning,P.E., Tibshirani,R., Botstein,D., Borresen-Dale,A.L. and Brown,P.O. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl Acad. Sci., USA, 99, 12963-12968.
5. Pressman,R.S. (1997) Software Engineering: A Practitioner's Approach, 4th edn. McGraw-Hill, New York, NY, USA, pp. 341-361.
6. Ramalho-Santos,M., Yoon,S., Matsuzaki,Y., Mulligan,R.C. and Mettoh,D.A. (2002) "Stemness": transcriptional profiling of embryonic and adult stem cells. Science, 298, 597-600.
7. Roy,P.J., Stuart,J.M., Lurd,J. and Kim,S.K. (2002) Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature, 418, 975-979.
8. Sturn,A., Quackenbush,J. and Trajanoski,Z. (2002) Genesis: cluster analysis of microarray. Bioinformatics, 18, 207-208.