Vibrational spectroscopy and computer modeling of proteins: Solving structure of α1-acid glycoprotein

Spectroscopy

Volumn 18, Issue 2, 2004, Pages 323-330

  Kopecký Jr , Vladimír ^a   Ettrich, Rüdiger ^b   Hofbauerová, Kateřina ^a   Baumruk, Vladimír ^a  

^a CHARLES UNIVERSITY   (Czech Republic)

^b INSTITUTE OF LANDSCAPE ECOLOGY   (Czech Republic)

Author keywords

Binding site; Fourier transform infrared spectroscopy; Molecular modeling; Orosomucoid; Raman spectroscopy; Thermal dynamics

Indexed keywords

BIOLOGICAL MEMBRANES; CARBOHYDRATES; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULAR VIBRATIONS;

HOMOLOGY; MOLECULAR MODELING; VIBRATIONAL SPECTROSCOPY;

PROTEINS;

CARBOHYDRATE; GLYCOPROTEIN; MEMBRANE PROTEIN; OROSOMUCOID;

AMINO ACID SEQUENCE; BINDING SITE; CARBOHYDRATE ANALYSIS; COMPUTER MODEL; CONFERENCE PAPER; INFRARED SPECTROSCOPY; INTERMETHOD COMPARISON; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE; PROTEIN STRUCTURE; RAMAN SPECTROMETRY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECTROSCOPY; STRUCTURE ANALYSIS; THERMAL ANALYSIS; THREE DIMENSIONAL IMAGING; VIBRATIONAL SPECTROSCOPY; X RAY ANALYSIS;

EID: 2442668918     PISSN: 07124813     EISSN: None     Source Type: Journal    
DOI: 10.1155/2004/747828     Document Type: Conference Paper

References (21)

1. +-ATPase, Biopolymers 67 (2002), 242-246.
2. +-ATPase, Biochem. Biophys. Res. Commun. 306 (2003), 416-420.
3. R. Ettrich, W. Brandt, V. Kopecký Jr., V. Baumruk, K. Hofbauerová and Z. Pavlíček, Study of chaperone-like activity of human haptoglobin: conformational changes under heat shock conditions and localization of interaction sites, Biol. Chetn. 383 (2002), 1667-1676.
4. 1-acid glycoprotein and its high-affinity binding site, Biochem. Biophys. Res. Commun. 300 (2003), 41-46.
5. K. Schmid, Preparation and properties of serum and plasma proteins XXIX, J. Am. Chem. Soc. 75 (1953), 60-68.
6. 1-acid glycoprotein, Biochem. Biophys. Res. Commun. 124 (1984), 619-624.
7. 1-acid glycoprotein, Biochemistry 15 (1976), 2245-2255.
8. T. Fournier, N. Medjoubi-N and D. Porquet, Alpha-1-acid glycoprotein, Biochim. Biophys. Acta 1482 (2000), 157-171.
9. F. Dousseau, M. Therrien and M. Pézolet, On the spectral subtraction of water from the FT-IR spectra of aqueous solutions of proteins, Appl. Spectrosc. 43 (1989), 538-542.
10. A. Sali and T.L. Blundell, Comparative modelling by satisfaction of spatial restraints, J. Mol. Biol. 234 (1993), 779-815.
11. N. Yamada, K. Ariga, M. Naito, K. Matsubara and E. Koyama, Regulation of β-sheet structures within amyloid-like β-sheet assemblage from tripeptide derivatives, J. Am. Chem. Soc. 120 (1998), 12192-12199.
12. F. Dousseau and M. Pézolet, Determination of the secondary structure content of proteins in aqueous solutions from their amide I and amide II infrared bands. Comparison between classical and partial least-squares methods, Biochemistry 29 (1990), 8771-8779.
13. R.W. Williams, Protein secondary structure analysis using Raman amide I and III spectra, Methods Enzymol. 130 (1986), 311-331.
14. H.E. Van Wart and H.A. Scheraga, Raman spectra of strained disulfides. Effect of rotation about sulfur-sulfur bonds on sulfur stretching frequencies, J. Phys. Chem. 80 (1976), 1823-1832.
15. 1- acid glycoprotein for characterization of the progesterone binding site, Biochim. Biophys. Acta 168 (1976), 195-213.
16. 1-acid glycoprotein, Biochim. Biophys. Acta 1336 (1997), 349-359.
17. M. Kodíček, A. Infanzón and V. Karpenko, Heat denaturation of human orosomucoid in water-methanol mixtures, Biochim. Biophys. Acta 1246 (1995), 10-16.
18. 1- glycoprotein in acidic media, Biophys. Chem. 103 (2003), 25-33.
19. 1- acid glycoprotein: generation of the three-dimensional quantitative structure-activity relationship model for drug binding to the A variant, Mol. Pharmacol. 54 (1998), 129-138.
20. +-ATPase, Nat. Struct. Biol. 10 (2003), 468-474.
21. +-ATPase N-domain at 2.6 Å resolution, J. Mol. Biol. 332 (2003), 1175-1182.