메뉴 건너뛰기




Volumn 70, Issue 5, 2004, Pages 3024-3040

Particle-based multidimensional multispecies biofilm model

Author keywords

[No Author keywords available]

Indexed keywords

BIOFILMS; BIOMASS; DIFFUSION; MATHEMATICAL MODELS;

EID: 2442656951     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.5.3024-3040.2004     Document Type: Article
Times cited : (269)

References (37)
  • 1
    • 0001818828 scopus 로고
    • r- and K-selection and microbial ecology
    • Andrews, J. H., and R. F. Harris. 1986. r- and K-selection and microbial ecology. Adv. Microb. Ecol. 9:99-147.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 99-147
    • Andrews, J.H.1    Harris, R.F.2
  • 2
    • 0037460221 scopus 로고    scopus 로고
    • Self-organized lane formation and optimized traffic flow in army ants
    • Couzin, I. D., and N. R. Franks. 2003. Self-organized lane formation and optimized traffic flow in army ants. Proc. R. Soc. London B Biol. Sci. 270: 139-146.
    • (2003) Proc. R. Soc. London B Biol. Sci. , vol.270 , pp. 139-146
    • Couzin, I.D.1    Franks, N.R.2
  • 3
    • 0034608589 scopus 로고    scopus 로고
    • A microscale model of bacterial and biofilm dynamics in porous media
    • Dillon, R., and L. Fauci. 2000. A microscale model of bacterial and biofilm dynamics in porous media. Biotechnol. Bioeng. 68:536-547.
    • (2000) Biotechnol. Bioeng. , vol.68 , pp. 536-547
    • Dillon, R.1    Fauci, L.2
  • 4
    • 0030295718 scopus 로고    scopus 로고
    • Modeling biofilm processes using the immersed boundary method
    • Dillon, R., L. Fauci, A. Fogelson, and D. Gaver. 1996. Modeling biofilm processes using the immersed boundary method. J. Comput. Phys. 129:57-73.
    • (1996) J. Comput. Phys. , vol.129 , pp. 57-73
    • Dillon, R.1    Fauci, L.2    Fogelson, A.3    Gaver, D.4
  • 6
    • 0035703066 scopus 로고    scopus 로고
    • Pore-scale modeling of biological clogging due to aggregate expansion: A material mechanics approach
    • Dupin, H. J., P. K. Kitanidis, and P. L. McCarty. 2001. Pore-scale modeling of biological clogging due to aggregate expansion: a material mechanics approach. Water Res. 37:2965-2979.
    • (2001) Water Res. , vol.37 , pp. 2965-2979
    • Dupin, H.J.1    Kitanidis, P.K.2    McCarty, P.L.3
  • 7
    • 0034351961 scopus 로고    scopus 로고
    • A three-dimensional numerical study on the correlation of spatial structure, hydrodynamic conditions, and mass transfer and conversion in biofilms
    • Eberl, H. J., C. Picioreanu, J. J. Heijnen, and M. C. M. van Loosdrecht. 2001. A three-dimensional numerical study on the correlation of spatial structure, hydrodynamic conditions, and mass transfer and conversion in biofilms. Chem. Eng. Sci. 55:6209-6222.
    • (2001) Chem. Eng. Sci. , vol.55 , pp. 6209-6222
    • Eberl, H.J.1    Picioreanu, C.2    Heijnen, J.J.3    Van Loosdrecht, M.C.M.4
  • 8
    • 0035738988 scopus 로고    scopus 로고
    • A new deterministic spatio-temporal continuum model for biofilm development
    • Eberl, H. J., D. F. Parker, and M. C. M. van Loosdrecht. 2001. A new deterministic spatio-temporal continuum model for biofilm development. J. Theor. Med. 3:161-175.
    • (2001) J. Theor. Med. , vol.3 , pp. 161-175
    • Eberl, H.J.1    Parker, D.F.2    Van Loosdrecht, M.C.M.3
  • 9
    • 0035809238 scopus 로고    scopus 로고
    • Sensitivity analysis of a biofilm model describing a one-stage completely autotrophic nitrogen removal (CANON) process
    • Hao, X., J. J. Heijnen, and M. C. M. van Loosdrecht. 2002. Sensitivity analysis of a biofilm model describing a one-stage completely autotrophic nitrogen removal (CANON) process. Biotechnol. Bioeng. 77:266-277.
    • (2002) Biotechnol. Bioeng. , vol.77 , pp. 266-277
    • Hao, X.1    Heijnen, J.J.2    Van Loosdrecht, M.C.M.3
  • 10
    • 0034727079 scopus 로고    scopus 로고
    • Simulating dynamical features of escape panic
    • Helbing, D., I. Farkas, and T. Vicsek. 2000. Simulating dynamical features of escape panic. Nature 407:487-490.
    • (2000) Nature , vol.407 , pp. 487-490
    • Helbing, D.1    Farkas, I.2    Vicsek, T.3
  • 11
    • 0031832673 scopus 로고    scopus 로고
    • A model of two-dimensional biofilm morphology
    • Hermanowicz, S. W. 1998. A model of two-dimensional biofilm morphology. Water Sci. Technol. 37:219-222.
    • (1998) Water Sci. Technol. , vol.37 , pp. 219-222
    • Hermanowicz, S.W.1
  • 12
    • 0035131741 scopus 로고    scopus 로고
    • A simple 2D biofilm model yields a variety of morphological features
    • Hermanowicz, S. W. 2001. A simple 2D biofilm model yields a variety of morphological features. Math. Biosci. 169:1-14.
    • (2001) Math. Biosci. , vol.169 , pp. 1-14
    • Hermanowicz, S.W.1
  • 13
    • 0032436318 scopus 로고    scopus 로고
    • BacSim, a simulator for individual-based modelling of bacterial colony growth
    • Kreft, J.-U., G. Booth, and J. W. T. Wimpenny. 1998. BacSim, a simulator for individual-based modelling of bacterial colony growth. Microbiology 144: 3275-3287.
    • (1998) Microbiology , vol.144 , pp. 3275-3287
    • Kreft, J.-U.1    Booth, G.2    Wimpenny, J.W.T.3
  • 15
    • 0035001212 scopus 로고    scopus 로고
    • Effect of EPS on biofilm structure and function as revealed by an individual-based model of biofilm growth
    • Kreft, J.-U., and J. W. T. Wimpenny. 2001. Effect of EPS on biofilm structure and function as revealed by an individual-based model of biofilm growth. Water Sci. Technol. 43:135-141.
    • (2001) Water Sci. Technol. , vol.43 , pp. 135-141
    • Kreft, J.-U.1    Wimpenny, J.W.T.2
  • 16
    • 2442649200 scopus 로고    scopus 로고
    • Modelling biofilms with extracellular polymeric substances
    • P. Gilbert, D. Allison, M. Brading, J. Verran, and J. Walker (ed.) BioLine, Cardiff, Wales
    • Kreft, J.-U., and J. W. T. Wimpenny. 2001. Modelling biofilms with extracellular polymeric substances, p. 191-199. In P. Gilbert, D. Allison, M. Brading, J. Verran, and J. Walker (ed.), Biofilm community interactions: chance or necessity? BioLine, Cardiff, Wales.
    • (2001) Biofilm Community Interactions: Chance or Necessity? , pp. 191-199
    • Kreft, J.-U.1    Wimpenny, J.W.T.2
  • 17
    • 0032550819 scopus 로고    scopus 로고
    • Influence of biomass production and detachment forces on biofilm structures in a biofilm airlift suspension reactor
    • Kwok, W. K., C. Picioreanu, S. L. Ong, M. C. M. van Loosdrecht, W. J. Ng, and J. J. Heijnen. 1998. Influence of biomass production and detachment forces on biofilm structures in a biofilm airlift suspension reactor. Biotechnol. Bioeng. 58:400-407.
    • (1998) Biotechnol. Bioeng. , vol.58 , pp. 400-407
    • Kwok, W.K.1    Picioreanu, C.2    Ong, S.L.3    Van Loosdrecht, M.C.M.4    Ng, W.J.5    Heijnen, J.J.6
  • 18
    • 85087238894 scopus 로고    scopus 로고
    • Results from the multi-species benchmark problem 3 (BM3) using two-dimensional models
    • in press
    • Noguera D. R., and C. Picloreanu. Results from the multi-species benchmark problem 3 (BM3) using two-dimensional models. Water Sci. Technol., in press.
    • Water Sci. Technol.
    • Noguera, D.R.1    Picloreanu, C.2
  • 19
    • 0033055006 scopus 로고    scopus 로고
    • Simulation of multispecies biofilm development in three dimensions
    • Noguera, D. R., G. Pizarro, D. A. Stahl, and B. E. Rittmann. 1999. Simulation of multispecies biofilm development in three dimensions. Water Sci. Technol. 39:123-130.
    • (1999) Water Sci. Technol. , vol.39 , pp. 123-130
    • Noguera, D.R.1    Pizarro, G.2    Stahl, D.A.3    Rittmann, B.E.4
  • 20
    • 0024053538 scopus 로고
    • A constant-depth laboratory model film fermenter
    • Peters, A. C., and J. W. T. Wimpenny. 1988. A constant-depth laboratory model film fermenter. Biotechnol. Bioeng. 32:263-270.
    • (1988) Biotechnol. Bioeng. , vol.32 , pp. 263-270
    • Peters, A.C.1    Wimpenny, J.W.T.2
  • 21
    • 0032549541 scopus 로고    scopus 로고
    • A new combined differential-discrete cellular automaton approach for biofilm modeling: Application for growth in gel beads
    • Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen. 1998. A new combined differential-discrete cellular automaton approach for biofilm modeling: application for growth in gel beads. Biotechnol. Bioeng. 57:718-731.
    • (1998) Biotechnol. Bioeng. , vol.57 , pp. 718-731
    • Picioreanu, C.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 22
    • 0032485575 scopus 로고    scopus 로고
    • Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach
    • Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen. 1998. Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach. Biotechnol. Bioeng. 58:101-116.
    • (1998) Biotechnol. Bioeng. , vol.58 , pp. 101-116
    • Picioreanu, C.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 23
    • 0034690578 scopus 로고    scopus 로고
    • A theoretical study on the effect of surface roughness on mass transport and transformation in biofilms
    • Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen. 2000. A theoretical study on the effect of surface roughness on mass transport and transformation in biofilms. Biotechnol. Bioeng. 68:354-369.
    • (2000) Biotechnol. Bioeng. , vol.68 , pp. 354-369
    • Picioreanu, C.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 24
    • 0034609601 scopus 로고    scopus 로고
    • Effect of diffusive and convective substrate transport on biofilm structure formation: A two-dimensional modeling study
    • Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen. 2000. Effect of diffusive and convective substrate transport on biofilm structure formation: a two-dimensional modeling study. Biotechnol. Bioeng. 69:504-515.
    • (2000) Biotechnol. Bioeng. , vol.69 , pp. 504-515
    • Picioreanu, C.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 25
    • 0000237036 scopus 로고    scopus 로고
    • Modelling and predicting biofilm structure
    • D. G. Allison, P. Gilbert, H. M. Lappin-Scott, and M. Wilson (ed.), Community structure and cooperation in biofilms. Cambridge University Press, Cambridge, United Kingdom
    • Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen. 2000. Modelling and predicting biofilm structure, p. 129-166. In D. G. Allison, P. Gilbert, H. M. Lappin-Scott, and M. Wilson (ed.), Community structure and cooperation in biofilms. 59th Symposium of the Society for General Microbiology. Cambridge University Press, Cambridge, United Kingdom.
    • (2000) 59th Symposium of the Society for General Microbiology , pp. 129-166
    • Picioreanu, C.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 26
    • 0035819412 scopus 로고    scopus 로고
    • Two-dimensional model of biofilm detachment caused by internal stress from liquid flow
    • Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen. 2001. Two-dimensional model of biofilm detachment caused by internal stress from liquid flow. Biotechnol. Bioeng. 72:205-218.
    • (2001) Biotechnol. Bioeng. , vol.72 , pp. 205-218
    • Picioreanu, C.1    Van Loosdrecht, M.C.M.2    Heijnen, J.J.3
  • 27
    • 0035450553 scopus 로고    scopus 로고
    • Quantitative cellular automaton model for biofilms
    • Pizarro, G., D. Griffeath, and D. R. Noguera. 2001. Quantitative cellular automaton model for biofilms. J. Environ. Eng. 127:782-789.
    • (2001) J. Environ. Eng. , vol.127 , pp. 782-789
    • Pizarro, G.1    Griffeath, D.2    Noguera, D.R.3
  • 30
    • 0019209729 scopus 로고
    • Model of steady-state-biofilm kinetics
    • Rittmann, B. E., and P. L. McCarty. 1980. Model of steady-state-biofilm kinetics. Biotechnol. Bioeng. 22:2343-2357.
    • (1980) Biotechnol. Bioeng. , vol.22 , pp. 2343-2357
    • Rittmann, B.E.1    McCarty, P.L.2
  • 31
    • 0033527329 scopus 로고    scopus 로고
    • Structural deformation of bacterial biofilms caused by short-term fluctuations in fluid shear: An in situ investigation of biofilm rheology
    • Stoodley, P., Z. Lewandowski, J. D. Boyle, and H. M. Lappin-Scott. 1999. Structural deformation of bacterial biofilms caused by short-term fluctuations in fluid shear: an in situ investigation of biofilm rheology. Biotechnol. Bioeng. 65:83-92.
    • (1999) Biotechnol. Bioeng. , vol.65 , pp. 83-92
    • Stoodley, P.1    Lewandowski, Z.2    Boyle, J.D.3    Lappin-Scott, H.M.4
  • 33
    • 0022678081 scopus 로고
    • A multispecies biofilm model
    • Wanner, O., and W. Gujer. 1986. A multispecies biofilm model. Biotechnol. Bioeng. 28:314-328.
    • (1986) Biotechnol. Bioeng. , vol.28 , pp. 314-328
    • Wanner, O.1    Gujer, W.2
  • 34
    • 0030061778 scopus 로고    scopus 로고
    • Mathematical modeling of mixed-culture biofilms
    • Wanner, O., and P. Reichert. 1996. Mathematical modeling of mixed-culture biofilms. Biotechnol. Bioeng. 49:172-184.
    • (1996) Biotechnol. Bioeng. , vol.49 , pp. 172-184
    • Wanner, O.1    Reichert, P.2
  • 35
    • 0031031474 scopus 로고    scopus 로고
    • A unifying hypothesis for the structure of microbial biofilms based on cellular automaton models
    • Wimpenny, J. W. T., and R. Colasanti. 1997. A unifying hypothesis for the structure of microbial biofilms based on cellular automaton models. FEMS Microbiol. Ecol. 22:1-16.
    • (1997) FEMS Microbiol. Ecol. , vol.22 , pp. 1-16
    • Wimpenny, J.W.T.1    Colasanti, R.2
  • 36
    • 0032004955 scopus 로고    scopus 로고
    • Diffusion and reaction in biofilms
    • Wood, B. D., and S. Whitaker. 1998. Diffusion and reaction in biofilms. Chem. Eng. Sci. 53:397-425.
    • (1998) Chem. Eng. Sci. , vol.53 , pp. 397-425
    • Wood, B.D.1    Whitaker, S.2
  • 37


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.