-
1
-
-
85158033913
-
Mobil introns: Pathways and proteins
-
(eds N.L. Craig et al.). American Society for Microbiology, Washington, DC
-
Belfort, M., Derbyshire, V., Parker, M.M., Cousineau, B., and Lambowitz, A.M. 2002. Mobil introns: Pathways and proteins. In Mobile DNA II (eds N.L. Craig et al.), pp. 761-783. American Society for Microbiology, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 761-783
-
-
Belfort, M.1
Derbyshire, V.2
Parker, M.M.3
Cousineau, B.4
Lambowitz, A.M.5
-
2
-
-
0036300893
-
The reverse transcriptase of the R2 non-LTR retrotransposon: Continuous synthesis of cDNA on non-continuous RNA templates
-
Bibillo, A. and Eickbush, T.H. 2002. The reverse transcriptase of the R2 non-LTR retrotransposon: Continuous synthesis of cDNA on non-continuous RNA templates. J. Mol. Biol. 316: 459-473.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 459-473
-
-
Bibillo, A.1
Eickbush, T.H.2
-
3
-
-
0031841911
-
The ribonuclease P database
-
Brown, J.W. 1998. The ribonuclease P database. Nucleic Acids Res. 26: 351-352.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 351-352
-
-
Brown, J.W.1
-
4
-
-
0032510519
-
Are retrotransposons long-term hitchhikers?
-
Burke, W.D., Malik, H.S., Lathe, III, W.C., and Eickbush, T.H. 1998. Are retrotransposons long-term hitchhikers? Nature 392: 141-142.
-
(1998)
Nature
, vol.392
, pp. 141-142
-
-
Burke, W.D.1
Malik, H.S.2
Lathe III, W.C.3
Eickbush, T.H.4
-
5
-
-
0032955930
-
The domain and structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods
-
Burke, W.D., Malik, H.S., Jones, J.P., and Eickbush, T.H. 1999. The domain and structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods. Mol. Biol. Evol. 16: 502-511.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 502-511
-
-
Burke, W.D.1
Malik, H.S.2
Jones, J.P.3
Eickbush, T.H.4
-
6
-
-
0034235829
-
Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3′ end
-
Chaboissier, M.C., Finnegan, D., and Bucheton, A. 2000. Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3′ end. Nucleic Acids Res. 28: 2467-2472.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2467-2472
-
-
Chaboissier, M.C.1
Finnegan, D.2
Bucheton, A.3
-
7
-
-
0034598919
-
Secondary structure of vertebrate telomerase RNA
-
Chen, J.L., Blasco, M.A., and Greider, C.W. 2000a. Secondary structure of vertebrate telomerase RNA. Cell 100: 503-514.
-
(2000)
Cell
, vol.100
, pp. 503-514
-
-
Chen, J.L.1
Blasco, M.A.2
Greider, C.W.3
-
8
-
-
0034651542
-
Prediction of common secondary structures of RNAs: A genetic algorithm approach
-
Chen, J., Le, S., and Maizel, J.V. 2000b. Prediction of common secondary structures of RNAs: A genetic algorithm approach. Nucleic Acids Res. 28: 991-999.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 991-999
-
-
Chen, J.1
Le, S.2
Maizel, J.V.3
-
9
-
-
0036847319
-
Human L1 element target-primed reverse transcription in vitro
-
Cost, G.J., Feng, Q., Jacquier, A., and Boeke, J.D. 2002. Human L1 element target-primed reverse transcription in vitro. EMBO J. 21: 5899-5910.
-
(2002)
EMBO J.
, vol.21
, pp. 5899-5910
-
-
Cost, G.J.1
Feng, Q.2
Jacquier, A.3
Boeke, J.D.4
-
10
-
-
85158011569
-
R2 and related site-specific non-long terminal repeat retrotransposons
-
(eds. N.L. Craig et al.). American Society for Microbiology, Washington, DC
-
Eickbush, T.H. 2002. R2 and related site-specific non-long terminal repeat retrotransposons. In Mobile DNA II (eds. N.L. Craig et al.), pp. 813-835. American Society for Microbiology, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 813-835
-
-
Eickbush, T.H.1
-
11
-
-
0033986777
-
Integration of Bombyx mori R2 sequences into the 28S ribosomal RNA genes of Drosophila melanogaster
-
Eickbush, D.G., Luan, D.D., and Eickbush, T.H. 2000. Integration of Bombyx mori R2 sequences into the 28S ribosomal RNA genes of Drosophila melanogaster. Mol. Cell. Biol. 20: 213-223.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 213-223
-
-
Eickbush, D.G.1
Luan, D.D.2
Eickbush, T.H.3
-
12
-
-
0031991410
-
Two nuclear genes yield concordant relationships within Attacini (Lepidoptera: Sayurniidae)
-
Friedlander, T.P., Horst, K.R., Regier, J.C., Mitter, C., Peigler, R.S., and Fang, Q.Q. 1998. Two nuclear genes yield concordant relationships within Attacini (Lepidoptera: Sayurniidae). Mol. Phylogenet. Evol. 9: 131-140.
-
(1998)
Mol. Phylogenet. Evol.
, vol.9
, pp. 131-140
-
-
Friedlander, T.P.1
Horst, K.R.2
Regier, J.C.3
Mitter, C.4
Peigler, R.S.5
Fang, Q.Q.6
-
13
-
-
0028071557
-
Collection of small subunit (16 S- and 16 S-like) ribosomal RNA structures
-
Gutell, R.R. 1994. Collection of small subunit (16 S- and 16 S-like) ribosomal RNA structures. Nucleic Acids Res. 22: 3502-3507.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3502-3507
-
-
Gutell, R.R.1
-
14
-
-
0027225783
-
A compilation of large subunit (23 S- and 23 S-like) ribosomal RNA structures
-
Gutell, R.R, Gray, M.W., and Schnare, M.N. 1993. A compilation of large subunit (23 S- and 23 S-like) ribosomal RNA structures. Nucleic Acids Res. 21: 3055-3074.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3055-3074
-
-
Gutell, R.R.1
Gray, M.W.2
Schnare, M.N.3
-
15
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
16
-
-
0031866668
-
The signal recognition particle database (SRPDB)
-
Larsen, N., Samuelsson, T., and Zwieb, C. 1998. The signal recognition particle database (SRPDB). Nucleic Acids Res. 26: 177-178.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 177-178
-
-
Larsen, N.1
Samuelsson, T.2
Zwieb, C.3
-
17
-
-
0030782396
-
A single lineage of R2 retrotransposable elements is an active, evolutionarily stabile component of the Drosophila rDNA locus
-
Lathe, III, W.C. and Eickbush, T.H. 1997. A single lineage of R2 retrotransposable elements is an active, evolutionarily stabile component of the Drosophila rDNA locus. Mol. Biol. Evol. 14: 1232-1241.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1232-1241
-
-
Lathe III, W.C.1
Eickbush, T.H.2
-
18
-
-
0036273255
-
Phylogenetic analysis of the structure of RNase MRP RNA in yeasts
-
Li, X., Frank, D.N., Pace, N., Zengel, J.M., and Lindahl, L. 2002. Phylogenetic analysis of the structure of RNase MRP RNA in yeasts. RNA 8: 740-751.
-
(2002)
RNA
, vol.8
, pp. 740-751
-
-
Li, X.1
Frank, D.N.2
Pace, N.3
Zengel, J.M.4
Lindahl, L.5
-
19
-
-
0030938901
-
Reverse transcriptase motifs in the catalytic subunit of telomerase
-
Lingner, J., Hughes, T.R., Shevchenko, A., Mann, M., Lundblad, V., and Cech, T.R. 1997. Reverse transcriptase motifs in the catalytic subunit of telomerase. Science 276: 561-567.
-
(1997)
Science
, vol.276
, pp. 561-567
-
-
Lingner, J.1
Hughes, T.R.2
Shevchenko, A.3
Mann, M.4
Lundblad, V.5
Cech, T.R.6
-
20
-
-
0029058441
-
RNA template requirements for DNA-primed reverse transcription by the R2 retrotransposable element
-
Luan, D.D. and Eickbush, T.H. 1995. RNA template requirements for DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol. 15: 3882-3891.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 3882-3891
-
-
Luan, D.D.1
Eickbush, T.H.2
-
21
-
-
0029741802
-
Downstream 28S gene sequences on the RNA template affect choice of primer and the accuracy of initiation by the R2 reverse transcriptase
-
-. 1996. Downstream 28S gene sequences on the RNA template affect choice of primer and the accuracy of initiation by the R2 reverse transcriptase. Mol. Cell. Biol. 16: 4726-4734.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 4726-4734
-
-
-
22
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan, D.D., Korman, M.H., Jakubczak, J.L., and Eickbush, T.H. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition. Cell 72: 595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
23
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
Malik, H.S., Burke, W.D., and Eickbush, T.H. 1999. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16: 793-805.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.H.3
-
24
-
-
0036295198
-
Dynalign: An algorithm for finding the secondary structure common to two sequences
-
Mathews, D.H. and Turner, D.H. 2002. Dynalign: An algorithm for finding the secondary structure common to two sequences. J. Mol. Biol. 317: 191-203.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 191-203
-
-
Mathews, D.H.1
Turner, D.H.2
-
25
-
-
0031014702
-
Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element
-
Mathews, D.H., Banerjee, A.R., Luan, D.D., Eickbush, T.H., and Turner, D.H. 1997. Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA 3: 1-16.
-
(1997)
RNA
, vol.3
, pp. 1-16
-
-
Mathews, D.H.1
Banerjee, A.R.2
Luan, D.D.3
Eickbush, T.H.4
Turner, D.H.5
-
26
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
27
-
-
0025678737
-
Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F. and Westhof, E. 1990. Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216: 585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
28
-
-
0022470564
-
Rapid chemical probing of conformation in 16S ribosomal RNA and 20S ribosomal subunits using primer extension
-
Moazed, D., Stern, S., and Noller, H.F. 1986. Rapid chemical probing of conformation in 16S ribosomal RNA and 20S ribosomal subunits using primer extension. J. Mol. Biol. 187: 399-416.
-
(1986)
J. Mol. Biol.
, vol.187
, pp. 399-416
-
-
Moazed, D.1
Stern, S.2
Noller, H.F.3
-
29
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran, J.V., Holmes, S.E., Naas, T.P., DeBerardinis, R.J., Boeke, J.D., and Kazazian, H.H. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87: 917-927.
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
Kazazian, H.H.6
-
30
-
-
0024416246
-
Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA-A review
-
Pace, N.R., Smith, D.K., Olsen, G.J., and James, B.D. 1989. Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA-A review. Gene 82: 65-75.
-
(1989)
Gene
, vol.82
, pp. 65-75
-
-
Pace, N.R.1
Smith, D.K.2
Olsen, G.J.3
James, B.D.4
-
31
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. 1998. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 26: 148-153.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
32
-
-
0031866152
-
5S rRNA data bank
-
Szymanski, M., Specht, T., Barciszewska, M.Z., Barciszewski, J., and Erdmann, V.A. 1998. 5S rRNA data bank. Nucleic Acids Res. 26: 156-159.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 156-159
-
-
Szymanski, M.1
Specht, T.2
Barciszewska, M.Z.3
Barciszewski, J.4
Erdmann, V.A.5
-
33
-
-
0036470563
-
Transplantation of target specificity by swapping the endonuclease domains of two LINEs
-
Takahashi, H. and Fujiwara, H. 2002. Transplantation of target specificity by swapping the endonuclease domains of two LINEs. EMBO J. 21: 408-417.
-
(2002)
EMBO J.
, vol.21
, pp. 408-417
-
-
Takahashi, H.1
Fujiwara, H.2
-
34
-
-
0037504164
-
Spinning junk into gold
-
Wickelgren, I. 2003. Spinning junk into gold. Science 300: 1646-1649.
-
(2003)
Science
, vol.300
, pp. 1646-1649
-
-
Wickelgren, I.1
-
35
-
-
0031841767
-
RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable element
-
Yang, J. and Eickbush, T.H. 1998. RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable element. Mol. Cell. Biol. 18: 3455-3465.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 3455-3465
-
-
Yang, J.1
Eickbush, T.H.2
-
36
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
|