메뉴 건너뛰기




Volumn 8, Issue , 2004, Pages 150-156

Discovering temporal relations in molecular pathways using protein-protein interactions

Author keywords

Interval graphs; Molecular pathways; Probe interval graphs; Protein protein interaction; Ribosomal assembly pathway; Vertex ordering

Indexed keywords

ALGORITHMS; DATA MINING; DATA REDUCTION; GRAPH THEORY; PHYSIOLOGICAL MODELS; PROTEINS;

EID: 2442623414     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/974614.974635     Document Type: Conference Paper
Times cited : (5)

References (27)
  • 1
    • 0037245913 scopus 로고    scopus 로고
    • Bind: The biomolecular interaction network database
    • G. D. B. and D. Batel and C. W. Hogue. Bind: the biomolecular interaction network database. Nucleic Acids Reseach, 31(1):248-250, 2003.
    • (2003) Nucleic Acids Reseach , vol.31 , Issue.1 , pp. 248-250
    • B., G.D.1    Batel, D.2    Hogue, C.W.3
  • 2
    • 0001829586 scopus 로고    scopus 로고
    • Computing an optimal orientation of a balanced decomposition tree for linear arrangement problems
    • R. Bar-Yehuda, G. Even J. Feldman, and S. Naora. Computing an optimal orientation of a balanced decomposition tree for linear arrangement problems. Journal of Graph Algorithms and Applications, 5(4):1-27, 2001.
    • (2001) Journal of Graph Algorithms and Applications , vol.5 , Issue.4 , pp. 1-27
    • Bar-Yehuda, R.1    Even, G.2    Feldman, J.3    Naora, S.4
  • 3
    • 0037264524 scopus 로고    scopus 로고
    • The grid: The general repository for interaction datasets
    • B.-J. Breitkreutz, C. Stark, and M. Tyers. The grid: the general repository for interaction datasets. Genome Biology, 4(3):R23, 2003.
    • (2003) Genome Biology , vol.4 , Issue.3
    • Breitkreutz, B.-J.1    Stark, C.2    Tyers, M.3
  • 6
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • A.-C. Gavin, M. Bösche, R. Krause, and etal. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415:141-147, 2002.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.-C.1    Bösche, M.2    Krause, R.3
  • 8
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in saccharornyces cerevisiae by mass spectrometry
    • Y. Ho, A. Gruhler, A. Heilbut, and etal. Systematic identification of protein complexes in saccharornyces cerevisiae by mass spectrometry. Nature, 415:180-183, 2002.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3
  • 11
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • T. Ideker, O. Ozier, B. Schwikowski, and A. F. Siegel. Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18(Suppl 1):S233-S240, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 12
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • T. Ito, K. Tashiro, S. Muta, R. Ozawa, T. Chiba, M. Nishizawa, K. Yamamoto, S. Kuhara, and Y. Sakaki. Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl. Acad. Sci. USA, 97(3):1143-1147, 2000.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , Issue.3 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5    Nishizawa, M.6    Yamamoto, K.7    Kuhara, S.8    Sakaki, Y.9
  • 14
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • E. M. Marcotte, M. Pellegrini, H.-L. Ng, D. W. Rice, T. O. Yeates, and D. Eisenberg. Detecting protein function and protein-protein interactions from genome sequences. Science. 285:751-753, 1999.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.-L.3    Rice, D.W.4    Yeates, T.O.5    Eisenberg, D.6
  • 19
    • 0035177259 scopus 로고    scopus 로고
    • Similarity of phylogenetic trees as indicator of protein-protein interaction
    • F. Pazos and A. Valencia. Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Engineering, 14(9):609-614, 2001.
    • (2001) Protein Engineering , vol.14 , Issue.9 , pp. 609-614
    • Pazos, F.1    Valencia, A.2
  • 22
    • 0842309161 scopus 로고    scopus 로고
    • Discovering molecular pathways from protein interaction and gene expression data
    • E. Segal, H. Wang, and D. Koller. Discovering molecular pathways from protein interaction and gene expression data. Bioinformatics. 19(Suppl 1):I264-I272, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Segal, E.1    Wang, H.2    Koller, D.3
  • 23
    • 0033725197 scopus 로고    scopus 로고
    • Mathematical modelling of gene networks
    • P. Smolen, D. A. Baxter, and J. H. Byme. Mathematical modelling of gene networks. Neuron. 26:567-580, 2000.
    • (2000) Neuron , vol.26 , pp. 567-580
    • Smolen, P.1    Baxter, D.A.2    Byme, J.H.3
  • 25
    • 0036088133 scopus 로고    scopus 로고
    • Dip, the database of interacting proteins: A research tool for studyingcellular networks of protein interactions
    • I. Xenarios, L. Salwinski, X. J. Duan, P. Higney, S. M. Kim, and D. Eisenberg. Dip, the database of interacting proteins: a research tool for studyingcellular networks of protein interactions. Nuclei Acids Reseach, 30:303-305, 2002.
    • (2002) Nuclei Acids Reseach , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwinski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5    Eisenberg, D.6
  • 26
    • 2442627073 scopus 로고
    • Probe interval graph and its applications to physical mapping of dna
    • P. Zhang. Probe interval graph and its applications to physical mapping of dna. technical report, 1982.
    • (1982) Technical Report
    • Zhang, P.1
  • 27
    • 0028321815 scopus 로고
    • An algorithm based on graph theory for the assembly of contigs in physical mapping of dna
    • P. Zhang, E. A. Schon, S. G. Fischer, E. Cayanis, J. Weiss, and S. K. P. E. Bourne. An algorithm based on graph theory for the assembly of contigs in physical mapping of dna. CABIOS, 10:309-317, 1994.
    • (1994) CABIOS , vol.10 , pp. 309-317
    • Zhang, P.1    Schon, E.A.2    Fischer, S.G.3    Cayanis, E.4    Weiss, J.5    Bourne, S.K.P.E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.