Comparison of genetic diversity in the recently founded Connecticut River Atlantic salmon population to that of its primary donor stock, Maine's Penobscot River

Aquaculture

Volumn 236, Issue 1-4, 2004, Pages 253-265

  Spidle, Adrian P ^a,b   King, Tim L ^a   Letcher, Benjamin H ^c  

^a LEETOWN SCIENCE CENTER   (United States)

^b Johnson Controls World Services   (United States)

^c U S GEOLOGICAL SURVEY   (United States)

Author keywords

Breeding; Demography; Microsatellite; Population genetics; Restoration; Salmonidae

Indexed keywords

GENETIC VARIATION; HATCHERY; HETEROZYGOSITY; POPULATION GENETICS; SALMONID;

CONNECTICUT RIVER; MAINE; NORTH AMERICA; PENOBSCOT RIVER; UNITED STATES;

SALMO SALAR; SALMONIDAE;

EID: 2442610696     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2003.11.017     Document Type: Article

References (38)

1. Adkison M. Population differentiation in Pacific salmon: local adaptation, genetic drift, or the environment? Can. J. Fish. Aquat. Sci. 52:1995;2762-2777
2. Angers B., Bernatchez L., Angers A., DesGroseillers L. Usefulness of heterologous microsatellites obtained from brook charr, Salvelinus fontinalis Mitchill, in other Salvelinus species. J. Fish Biol. 47:1995;177-185
3. Connecticut River Atlantic Salmon Commission (CRASC) Strategic Plan for the Restoration of Atlantic Salmon to the Connecticut River. CRASC 103 East Plumtree Road, Sunderland, MA 013750-9647, USA. 1998;. available online at http://www.fws.gov/r5crc/documents/spsum.pdf
4. Daye P.G., Glebe B.D. Fertilization success and sperm motility of Atlantic salmon (Salmo salar L.) in acidified water. Aquaculture. 43:1984;307-312
5. Felsenstein J. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics. 5:1989;164-166
6. Frankham R. Conservation genetics. Annu. Rev. Genet. 29:1995;305-327
7. Gile S.R., Ferguson M.M. Factors affecting male potency in pooled gamete crosses of rainbow trout, Oncorhynchus mykiss. Environ. Biol. Fisches. 42:1995;267-275
8. Goudet J. FSTAT (vers. 1.2): a computer program to calculate F-statistics. J. Hered. 86:1995;485-486
9. Goudet J., Raymond M., De Meeüs T., Rousset F. Testing differentiation in diploid populations. Genetics. 144:1996;933-1940
10. Guo S.W., Thompson E.A. Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics. 48:1992;361-372
11. Hedgecock D., Chow V., Waples R.S. Effective population numbers of shellfish broodstocks estimated from temporal variance in allelic frequencies. Aquaculture. 108:1992;215-232
12. Hedrick P.W., Rashbrook V.K., Hedgecock D. Effective population size of winter-run Chinook salmon based on microsatellite analysis of returning spawners. Can. J. Fish. Aquat. Sci. 57:2000;2368-2373
13. Hendry A.P., Letcher B.H., Gries G. Estimating natural selection acting on stream-dwelling Atlantic salmon: implications for the restoration of extirpated populations. Conserv. Biol. 17:2002;795-805
14. Jorde P.E., Ryman N. Temporal allele frequency change and estimation of effective size in populations with overlapping generations. Genetics. 139:1995;1077-1090
15. Jorde P.E., Ryman N. Demographic genetics of brown trout (Salmo trutta) and estimation of effective population size from temporal change of allele frequencies. Genetics. 143:1996;1369-1381
16. Kalinowski S.T. Evolutionary and statistical properties of three genetic distances. Mol. Ecol. 11:2002;1263-1273
17. King T.L., Kalinowski S.T., Schill W.B., Spidle A.P., Lubinski B.A. Population structure of Atlantic salmon (Salmo salar L.), a range-wide perspective from microsatellite DNA variation. Mol. Ecol. 10:2001;807-821
18. LaBarca C., Paigen K. A simple, rapid, and sensitive DNA assay procedure. Anal. Biochem. 102:1980;344-352
19. Letcher B.H., King T.L. Targeted stock identification using multilocus genotype 'familyprinting'. Fish. Res. 43:1999;99-111
20. Nei M., Tajima F., Tateno Y. Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19:1983;153-170
21. O'Reilly P.T., Hamilton L.C., McConnell S.K., Wright J.M. Rapid detection of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Can. J. Fish. Aquat. Sci. 53:1996;2292-2298
22. Raymond M., Rousset R. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86:1995;248-249
23. Rice W.R. Analyzing tables of statistical tests. Evolution. 43:1989;223-225
24. Ryman N. Minimizing adverse effects of fish culture: understanding the genetics of populations with overlapping generations. ICES J. Mar. Sci. 54:1997;1149-1159
25. Schneider S., Roessli D., Excoffier L. Arlequin 2.000: A Software for Population Genetics Data Analysis. 2000;Genetics and Biometry Laboratory, University of Geneva, Switzerland
26. Simon R.C., McIntyre J.D., Hemmingsen A.R. Family size and effective population in a hatchery stock of coho salmon (Oncorhynchus kisutch). Can. J. Fish. Aquat. Sci. 43:1986;2434-2442
27. Slatkin M. A measure of population subdivision based on microsatellite allele frequencies. Genetics. 139:1995;457-462
28. Slettan A., Olsaker I., Lie O. Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Anim. Genet. 25:1995;281-282
29. Spidle A.P., Schill W.B., Lubinski B.A., King T.L. Fine-scale population structure in Atlantic salmon from Maine's Penobscot River drainage. Conserv. Genet. 2:2001;11-24
30. Spidle A.P., Kalinowski S.T., Lubinski B.A., Perkins D.L., Beland K.F., Kocik J.F., King T.L. Population structure of Atlantic salmon in Maine with reference to populations from Atlantic Canada. Trans. Am. Fish. Soc. 132:2003;196-209
31. Takezaki N., Nei M. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics. 144:1996;389-399
32. United States Atlantic Salmon Assessment Committee Annual Report of the US Atlantic Salmon Assessment Committee. Report No. 11-1998 activities. Prepared for U.S. Section to NASCO (North Atlantic Salmon Conservation Organization). 1999
33. Wang J. A pseudo-likelihood method for estimating effective population size from temporally spaced samples. Genet. Res. Camb. 78:2001;243-257
34. Waples R.S. Conservation genetics of Pacific salmon: II. Effective population size and the rate of loss of genetic variability. J. Hered. 81:1990;267-276
35. Waples R.S. Conservation genetics of Pacific salmon: III. Estimating effective population size. J. Hered. 81:1990;277-289
36. Waples R.S., Teel D.J. Conservation genetics of Pacific salmon: I. Temporal changes in allele frequency. Conserv. Biol. 4:1990;144-156
37. Wright S. Size of population and breeding structure in relation to evolution. Science. 87:1938;430-431
38. Wright S. Evolution and the Genetics of Populations. vol. 4:1978;University of Chicago Press, Chicago