-
2
-
-
0030381077
-
The Quickhull algorithm for convex hulls
-
C. B. Barber, D. P. Dobkin, and H. Huhdanpaa. The Quickhull algorithm for convex hulls. ACM Trans. Math. Softw., 22(4):469-483, 1996.
-
(1996)
ACM Trans. Math. Softw.
, vol.22
, Issue.4
, pp. 469-483
-
-
Barber, C.B.1
Dobkin, D.P.2
Huhdanpaa, H.3
-
4
-
-
34247094868
-
Approximation algorithms for 3-d common substructure identification in drug and protein molecules
-
S. Chakraborty and S. Biswas. Approximation algorithms for 3-d common substructure identification in drug and protein molecules. Workshop on Algorithms and Data Structures, pages 253-264, 1999.
-
(1999)
Workshop on Algorithms and Data Structures
, pp. 253-264
-
-
Chakraborty, S.1
Biswas, S.2
-
8
-
-
0030706473
-
Rapid: Randomized pharmacophore identification for drug design
-
P. W. Finn, L. E. Kavraki, J. Latombe, R. Motwani, C. R. Shelton, S. Venkatasubramanian, and A. Yao. Rapid: Randomized pharmacophore identification for drug design. Symposium on Computational Geometry, pages 324-333, 1997.
-
(1997)
Symposium on Computational Geometry
, pp. 324-333
-
-
Finn, P.W.1
Kavraki, L.E.2
Latombe, J.3
Motwani, R.4
Shelton, C.R.5
Venkatasubramanian, S.6
Yao, A.7
-
9
-
-
0028230909
-
Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: Potential implication to evolution and to protein folding
-
D. Fischer, H. Wolfson, S. L. Lin, and R. Nussinov. Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implication to evolution and to protein folding. Protein Science, 3:769-778, 1994.
-
(1994)
Protein Science
, vol.3
, pp. 769-778
-
-
Fischer, D.1
Wolfson, H.2
Lin, S.L.3
Nussinov, R.4
-
10
-
-
0027511808
-
Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm
-
H. Grindley, P. Artymiuk, D. Rice, and P. Willet. Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm. J. Mol. biol., 229:707-721, 1993.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 707-721
-
-
Grindley, H.1
Artymiuk, P.2
Rice, D.3
Willet, P.4
-
12
-
-
0032944238
-
The prosite database, its status in 1999
-
S. K. Hofmann, P. Bucher, L. Falquet, and A. Bairoch. The prosite database, its status in 1999. Nucleic Acids Res, 27(1):215-219, 1999.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.1
, pp. 215-219
-
-
Hofmann, S.K.1
Bucher, P.2
Falquet, L.3
Bairoch, A.4
-
14
-
-
25344450594
-
Efficient mining of frequent subgraph in the presence of isomorphism
-
J. Huan, W. Wang, and J. Prins. Efficient mining of frequent subgraph in the presence of isomorphism. UNC computer science technical report TR03-021, 2003.
-
(2003)
UNC Computer Science Technical Report
, vol.TR03-021
-
-
Huan, J.1
Wang, W.2
Prins, J.3
-
15
-
-
2442674421
-
Accurate classification of protein structural families based on coherent subgraph analysis
-
J. Huan, W. Wang, A. Washington, J. Prins, R. Shah, and A. Tropsha. Accurate classification of protein structural families based on coherent subgraph analysis. In Proc. Pacific Symposium on Biocomputing, 2004.
-
(2004)
Proc. Pacific Symposium on Biocomputing
-
-
Huan, J.1
Wang, W.2
Washington, A.3
Prins, J.4
Shah, R.5
Tropsha, A.6
-
17
-
-
0012906024
-
An apriori-based algorithm for mining frequent substructures from graph data
-
A. Inokuchi, T. Washio, and H. Motoda. An apriori-based algorithm for mining frequent substructures from graph data. In PKDD'00.
-
PKDD'00.
-
-
Inokuchi, A.1
Washio, T.2
Motoda, H.3
-
18
-
-
0035427398
-
Graph theory predictions of protein flexibility
-
D. Jacobs, A. Rader, L. Kuhn, and M. Thorpe. Graph theory predictions of protein flexibility. Proteins; Struct. Funct. Genet., 44:150-155, 2001.
-
(2001)
Proteins; Struct. Funct. Genet.
, vol.44
, pp. 150-155
-
-
Jacobs, D.1
Rader, A.2
Kuhn, L.3
Thorpe, M.4
-
19
-
-
84896693236
-
Computing the edit-distance between unrooted ordered trees
-
P. N. Klein. Computing the edit-distance between unrooted ordered trees. In Proc. 6th Annual Enropean Symposium, pages 91-102, 1998.
-
(1998)
Proc. 6th Annual Enropean Symposium
, pp. 91-102
-
-
Klein, P.N.1
-
20
-
-
0033613813
-
Recognition of spatial motifs in protein structures
-
G. J. Kleywegt. Recognition of spatial motifs in protein structures. Journal of Molecular Biology, 285(4): 1887-1897, 1999.
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.4
, pp. 1887-1897
-
-
Kleywegt, G.J.1
-
22
-
-
0032190305
-
Analytical shape computing of macromolecules I: Molecular area and volume through alpha shape
-
J. Liang, H. Edelsbrunner, P. Fu, P. Sudhakar, and S. Subramaniam. Analytical shape computing of macromolecules I: molecular area and volume through alpha shape. Proteins, 33:1-17, 1998.
-
(1998)
Proteins
, vol.33
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.4
Subramaniam, S.5
-
23
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
A. Murzin, S. Brenner, T. Hubbard, and C. Chothia. SCOP: a structural classification of proteins database for the investigation of sequences and structures. Journal of Molecular Biology, 247:536-40, 1995.
-
(1995)
Journal of Molecular Biology
, vol.247
, pp. 536-540
-
-
Murzin, A.1
Brenner, S.2
Hubbard, T.3
Chothia, C.4
-
24
-
-
0015977588
-
The interpretation of protein structures: Total volume, group volume distributions, and packing density
-
F. M. Richards. The interpretation of protein structures: total volume, group volume distributions, and packing density. J. Molecular Biology, 82:1-14, 1974.
-
(1974)
J. Molecular Biology
, vol.82
, pp. 1-14
-
-
Richards, F.M.1
-
25
-
-
0024061490
-
An algorithm for comparing multiple RNA secondary structures
-
B. Shapiro. An algorithm for comparing multiple RNA secondary structures. Comp. Appl. Biosci, 4(3):387-393, 1988.
-
(1988)
Comp. Appl. Biosci
, vol.4
, Issue.3
, pp. 387-393
-
-
Shapiro, B.1
-
27
-
-
0030651230
-
Distribution of distances and triangles in a point set and algorithms for computing the largest common point sets
-
H. T. T. Akutsu and T. Tokuyama. Distribution of distances and triangles in a point set and algorithms for computing the largest common point sets. In 13th Annual ACM Symp. on Computational Geometry, pages 314-323, 1997.
-
(1997)
13th Annual ACM Symp. on Computational Geometry
, pp. 314-323
-
-
Akutsu, H.T.T.1
Tokuyama, T.2
-
28
-
-
0346753467
-
Simplicial neighborhood analysis of protein packing (SNAPP): A computational geometry approach to studying proteins
-
A. Tropsha, C. Carter, S. Cammer, and I. Vaisman. Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins. Methods Enzymol., 374:509-544, 2003.
-
(2003)
Methods Enzymol.
, vol.374
, pp. 509-544
-
-
Tropsha, A.1
Carter, C.2
Cammer, S.3
Vaisman, I.4
-
29
-
-
0033516705
-
The packing density in proteins: Standard radii and volumes
-
J. Tsai, R. Taylor, C. Chothia, and M. Gerstein. The packing density in proteins: Standard radii and volumes. Journal of Molecular Biology, 290(1):253-266, 1999.
-
(1999)
Journal of Molecular Biology
, vol.290
, Issue.1
, pp. 253-266
-
-
Tsai, J.1
Taylor, R.2
Chothia, C.3
Gerstein, M.4
-
31
-
-
2442450904
-
Protein structure: Insights from graph theory
-
S. Vishveshwara, K. V. Brinda, and N. Kannan. Protein structure: Insights from graph theory. J. of Theo. and Comp. Chem., 1(1): 187-211, 2002.
-
(2002)
J. of Theo. and Comp. Chem.
, vol.1
, Issue.1
, pp. 187-211
-
-
Vishveshwara, S.1
Brinda, K.V.2
Kannan, N.3
-
32
-
-
0031736346
-
Novel method to detect a motif of local structures in different protein conformations
-
H. Wako and T. Yamato. Novel method to detect a motif of local structures in different protein conformations. Protein Engineering, 11:981-990, 1998.
-
(1998)
Protein Engineering
, vol.11
, pp. 981-990
-
-
Wako, H.1
Yamato, T.2
-
34
-
-
0033562691
-
Identification of structural domains in proteins by a graph heuristic
-
L. Wernisch, M. Hunting, and S. Wodak. Identification of structural domains in proteins by a graph heuristic. Proteins, 35(3):338-352, 1999.
-
(1999)
Proteins
, vol.35
, Issue.3
, pp. 338-352
-
-
Wernisch, L.1
Hunting, M.2
Wodak, S.3
-
36
-
-
0024889169
-
Simple fast algorithm for the editing distance between trees and related problems
-
K. Zhang, R. Stgatman, and D. Shasha. Simple fast algorithm for the editing distance between trees and related problems. SIAM Journal on Computing, 18(6):1245-1262, 1989.
-
(1989)
SIAM Journal on Computing
, vol.18
, Issue.6
, pp. 1245-1262
-
-
Zhang, K.1
Stgatman, R.2
Shasha, D.3
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