-
1
-
-
0142037520
-
A stochastic approach to hydrodynamics
-
BRENNIG, L., MALEK-MANSOUR, M., and HORSTHEMKE, W. (1976). A stochastic approach to hydrodynamics. Physical Lett. A. 59A, 341-342.
-
(1976)
Physical Lett. A
, vol.59 A
, pp. 341-342
-
-
Brennig, L.1
Malek-Mansour, M.2
Horsthemke, W.3
-
2
-
-
0031021873
-
Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes
-
BAKKER, B.M., MICHELS, P.A.M., OPPERDOES, F.R., et al. (1997). Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes. Journal of Biological Chemistry 272, 3207-3215.
-
(1997)
Journal of Biological Chemistry
, vol.272
, pp. 3207-3215
-
-
Bakker, B.M.1
Michels, P.A.M.2
Opperdoes, F.R.3
-
3
-
-
0013770049
-
DPNH oscillations in a cell-free extract of S. carlsbergensis
-
CHANCE, B., HESS, B., and BETZ, A. (1964). DPNH oscillations in a cell-free extract of S. carlsbergensis. Biochem. Biophys. Res. Commun. 16, 182-187.
-
(1964)
Biochem. Biophys. Res. Commun
, vol.16
, pp. 182-187
-
-
Chance, B.1
Hess, B.2
Betz, A.3
-
4
-
-
0004260193
-
-
Academic Press, New York
-
CHANCE, B., PYE, E.K., GHOSH, A.K., et al., eds. (1973). Biological and Biochemical Oscillators (Academic Press, New York).
-
(1973)
Biological and Biochemical Oscillators
-
-
Chance, B.1
Pye, E.K.2
Ghosh, A.K.3
-
5
-
-
0142101067
-
Generalized nonlinear master equations for local fluctuations: Dimensionality expansions and augmented mean field theory
-
DELLE DONNE, M., and ORTOLEVA, P. (1978). Generalized nonlinear master equations for local fluctuations: dimensionality expansions and augmented mean field theory. Journal of Stat. Phys., 18, 319-331.
-
(1978)
Journal of Stat. Phys.
, vol.18
, pp. 319-331
-
-
Delle Donne, M.1
Ortoleva, P.2
-
9
-
-
0142101063
-
Stochastic simulation of cell signaling pathways
-
Bower, J.M., and Bolouri, H., eds. (The MIT Press, Cambridge, MA)
-
FIRTH, C.A.J.M., and BRAY, D. (2000). Stochastic simulation of cell signaling pathways. In: Bower, J.M., and Bolouri, H., eds. Computation Modeling of Genetic and Biochemical Networks. (The MIT Press, Cambridge, MA), 263-286.
-
(2000)
Computation Modeling of Genetic and Biochemical Networks
, pp. 263-286
-
-
Firth, C.A.J.M.1
Bray, D.2
-
10
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
GILLESPIE, D.T. (1976). A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal Comput. Phys., 22, 403-434.
-
(1976)
Journal Comput. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
11
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
GILLESPIE, D. T. (1977). Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81, 2340-2361.
-
(1977)
Journal of Physical Chemistry
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
13
-
-
0015810231
-
Chemical oscillations and multiple steady states due to variable boundary permeability
-
HAHN, H.-S., ORTOLEVA, P., and ROSS, J. (1973). Chemical oscillations and multiple steady states due to variable boundary permeability. Journal of Theoretical Biology 41, 503-521.
-
(1973)
Journal of Theoretical Biology
, vol.41
, pp. 503-521
-
-
Hahn, H.-S.1
Ortoleva, P.2
Ross, J.3
-
14
-
-
0011746974
-
Threshold excitations, relaxation oscillations, and effect of noise in an enzyme reaction
-
HAHN, H.-S., NITZAN, A., ORTOLEVA, P., et al. (1974). Threshold excitations, relaxation oscillations, and effect of noise in an enzyme reaction. Proceedings of the National Academy of Sciences USA 71, 4067-4071.
-
(1974)
Proceedings of the National Academy of Sciences USA
, vol.71
, pp. 4067-4071
-
-
Hahn, H.-S.1
Nitzan, A.2
Ortoleva, P.3
-
15
-
-
0036489115
-
New space warping method for the simulation of large-scale macromolecular conformational changes
-
JAQAMAN, K., and ORTOLEVA, P. (2002). New space warping method for the simulation of large-scale macromolecular conformational changes. Journal of Computational Chemistry 23, 484-491.
-
(2002)
Journal of Computational Chemistry
, vol.23
, pp. 484-491
-
-
Jaqaman, K.1
Ortoleva, P.2
-
16
-
-
0142101060
-
-
in preparation
-
JARYMOWYCZ, L., HUBBARD, V., BERRY, E., TUNCAY, K., and ORTOLEVA, P. (2003). VirusX®: All-atom simulation of viral structure and stability (in preparation).
-
(2003)
VirusX®: All-atom Simulation of Viral Structure and Stability
-
-
Jarymowycz, L.1
Hubbard, V.2
Berry, E.3
Tuncay, K.4
Ortoleva, P.5
-
17
-
-
11944266539
-
Information theory and statistical mechanics
-
JAYNES, E.T. (1957). Information theory and statistical mechanics. Physical Review 106, 620-630.
-
(1957)
Physical Review
, vol.106
, pp. 620-630
-
-
Jaynes, E.T.1
-
20
-
-
0019943547
-
A study of instability to electrical symmetry breaking in unicellular systems
-
LARTER, R., and ORTOLEVA, P. (1982). A study of instability to electrical symmetry breaking in unicellular systems. Journal of Theoretical Biology 96, 175-200.
-
(1982)
Journal of Theoretical Biology
, vol.96
, pp. 175-200
-
-
Larter, R.1
Ortoleva, P.2
-
21
-
-
0034961694
-
STochSim: Modelling of stochastic biomolecular processes
-
LENOVERE, N., and SHIMIZU, T.S. (2001). STochSim: modelling of stochastic biomolecular processes. Bioinformatics 17, 575-576.
-
(2001)
Bioinformatics
, vol.17
, pp. 575-576
-
-
Lenovere, N.1
Shimizu, T.S.2
-
24
-
-
0030921160
-
Biochemistry by numbers: Simulation of biochemical pathways with Gepasi 3
-
MENDES, P. (1997). Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3. Trends in Biochemical Sciences 22, 361-363.
-
(1997)
Trends in Biochemical Sciences
, vol.22
, pp. 361-363
-
-
Mendes, P.1
-
25
-
-
0345457267
-
Simulated nonlinear dynamics of glycolysis in the protozoan parasite Trypanosoma brucei
-
submitted
-
NAVID, A., and ORTOLEVA, P. (2003). Simulated nonlinear dynamics of glycolysis in the protozoan parasite Trypanosoma brucei (submitted to J. Theor. Biol.).
-
(2003)
J. Theor. Biol.
-
-
Navid, A.1
Ortoleva, P.2
-
26
-
-
0000225662
-
Fluctuations and transitions at chemical instabilities: The analogy to phase transitions
-
NITZAN, A., ORTOLEVA, P., DEUTCH, J., et al. (1974). Fluctuations and transitions at chemical instabilities: the analogy to phase transitions. Journal of Chemical Physics 61, 1056-1074.
-
(1974)
Journal of Chemical Physics
, vol.61
, pp. 1056-1074
-
-
Nitzan, A.1
Ortoleva, P.2
Deutch, J.3
-
27
-
-
36849102494
-
Symmetry breaking instabilities in dissipative systems II
-
PRIGOGINE, I., and LEFEVER, R. (1968). Symmetry breaking instabilities in dissipative systems II. Journal of Chemical Physics 48, 1695-1700.
-
(1968)
Journal of Chemical Physics
, vol.48
, pp. 1695-1700
-
-
Prigogine, I.1
Lefever, R.2
-
28
-
-
0015767391
-
A chemical instability mechanism for asymmetric cell differentiation
-
ORTOLEVA, P., and ROSS, J. (1973). A chemical instability mechanism for asymmetric cell differentiation. Biophysical Chemistry 1, 87-96.
-
(1973)
Biophysical Chemistry
, vol.1
, pp. 87-96
-
-
Ortoleva, P.1
Ross, J.2
-
29
-
-
0001558564
-
Theory of propagation of discontinuities in kinetic systems with multiple time scales: Fronts, front multiplicity, and pulses
-
ORTOLEVA, P., and ROSS, J. (1975). Theory of propagation of discontinuities in kinetic systems with multiple time scales: fronts, front multiplicity, and pulses. Journal of Chemical Physics 63, 3398-3408.
-
(1975)
Journal of Chemical Physics
, vol.63
, pp. 3398-3408
-
-
Ortoleva, P.1
Ross, J.2
-
30
-
-
0000922209
-
Computer molecular dynamics studies of a chemical instability
-
ORTOLEVA, P., and YIP, S. (1976). Computer molecular dynamics studies of a chemical instability. Journal of Chemical Physics 65, 2045-2051.
-
(1976)
Journal of Chemical Physics
, vol.65
, pp. 2045-2051
-
-
Ortoleva, P.1
Yip, S.2
-
31
-
-
0142101069
-
Electrical phenomena in developing biological systems
-
Burton, T.A., ed. (Pergamon Press, New York)
-
ORTOLEVA, P. (1981a). Electrical phenomena in developing biological systems. In: Burton, T.A., ed. Mathematical Biology: A Conference on Theoretical Aspects of Molecular Science, (Pergamon Press, New York), 209-224.
-
(1981)
Mathematical Biology: A Conference on Theoretical Aspects of Molecular Science
, pp. 209-224
-
-
Ortoleva, P.1
-
32
-
-
0142101064
-
Developmental bioelectricity
-
Illinger, K.H., ed. (American Chemical Society, Washington, DC)
-
ORTOLEVA, P. (1981b). Developmental bioelectricity. In: Illinger, K.H., ed. Biological Effects of Nonionizing Radiation (American Chemical Society, Washington, DC), 163-212.
-
(1981)
Biological Effects of Nonionizing Radiation
, pp. 163-212
-
-
Ortoleva, P.1
-
36
-
-
36849102494
-
Symmetry breaking instabilities in dissipative systems II
-
PRIGOGINE, I., and LEFEVER, R. (1968). Symmetry breaking instabilities in dissipative systems II. Journal Chemical Physical 48, 1695-1700.
-
(1968)
Journal Chemical Physical
, vol.48
, pp. 1695-1700
-
-
Prigogine, I.1
Lefever, R.2
-
39
-
-
0027178664
-
SCAMP: A general purpose simulator and metabolic control analysis program
-
SAURO, H.M. (1993). SCAMP: a general purpose simulator and metabolic control analysis program. CABIOS 9, 441-450.
-
(1993)
CABIOS
, vol.9
, pp. 441-450
-
-
Sauro, H.M.1
-
43
-
-
0142037517
-
Computational cell biology - The stochastic approach
-
Kitano, H., ed. (MIT Press, Cambridge, MA)
-
SHIMIZU, T.S., and BRAY, D. (2001) Computational cell biology - the stochastic approach. In: Kitano, H., ed. Foundations of Systems Biology. (MIT Press, Cambridge, MA).
-
(2001)
Foundations of Systems Biology
-
-
Shimizu, T.S.1
Bray, D.2
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