Genetic diversity in farmed Asian Nile and red hybrid tilapia stocks evaluated from microsatellite and mitochondrial DNA analysis

Aquaculture

Volumn 236, Issue 1-4, 2004, Pages 131-150

  Romana Eguia, Maria Rowena R ^a,b   Ikeda, Minoru ^b   Basiao, Zubaida U ^a   Taniguchi, Nobuhiko ^b  

^a SEAFDEC Aquaculture Department   (Philippines)

^b TOHOKU UNIVERSITY   (Japan)

Author keywords

Genetically improved stocks; Microsatellite; Mitochondrial DNA RFLP; Oreochromis niloticus; Tilapia

Indexed keywords

AQUACULTURE; DNA; GENETIC VARIATION; SELECTIVE BREEDING;

OREOCHROMIS; OREOCHROMIS NILOTICUS; TILAPIA;

EID: 2442507758     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2004.01.026     Document Type: Article

References (62)

1. Agnèse J.F., Adepo-Gourene B., Abban E.K., Fermon Y. Genetic differentiation among natural populations of the Nile tilapia Oreochromis niloticus (Teleostei Cichlidae). Heredity. 79:1997;88-96
2. Agresti J.J., Seki S., Cnaani A., Poompuang S., Hallerman E.M., Umiel N., Hulata G., Gall G.A.E., May B. Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture. 185:2000;43-56
3. Aliah R.S., Sato S., Taniguchi N. An evaluation of genetic variability in nishikigoi, Cyprinus carpio, stocks from Niigata Prefecture, based on microsatellite DNA markers. Suisan Zoshoku. 48(1):2000;25-31
4. Allendorf F.W., Ryman N., Utter F.M. Genetics and fishery management. Ryman N., Utter F. Population Genetics and Fishery Management. 1988;1-18 University of Washington Press, Seattle, Washington
5. Asahida T., Kobayashi T., Saitoh K., Nakayama I. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci. 62:1996;727-730
6. Ashley M.V., Dow B.D. The use of microsatellite analysis in population biology: background, methods and potential applications. Schierwater B., Streit B., Wagner G.P., De la Salle R. Molecular Ecology and Evolution: Approaches and Applications. 1994;185-201 Bierkhauser, Basel, Switzerland
7. Avise J.C. Phylogeography: The History and Formation of Species. 2000;Harvard Univ. Press, Cambridge, MA
8. Avise J.C., Arnold J., Ball R.M., Birmingham E., Lamb T., Neigel J.E., Reeb C.A., Saunders N.C. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Ann. Rev. Ecolog. Syst. 18:1987;489-491
9. Avtalion R.R., Duczyminer M., Wodjani A., Pruginin Y. Determination of allogeneic and xenogeneic markers in the genus of Tilapia: II. Identification of T. aurea, T. vulcani, and T. nilotica by electrophoretic analysis of their serum proteins. Aquaculture. 7:1976;255-265
10. Basiao Z.U., Doyle R.W. Test of size-specific mass selection for Nile tilapia, Oreochromis niloticus L., cage farming in the Philippines. Aquac. Res. 30:1999;373-378
11. Basiao Z.U., Taniguchi N. An investigation of enzyme and other protein polymorphisms in Japanese stocks of the tilapias (Oreochromis niloticus and Tilapia zillii). Aquaculture. 38:1984;335-345
12. Beardmore J.A., Mair G.C., Lewis R.I. Monosex male production in finfish as exemplified by tilapia: applications, problems and prospects. Aquaculture. 197:2001;293-301
13. Bernatchez L., Danzmann R.G. Congruence in control-region sequence and restriction site variation in mitochondrial DNA of brook charr (Salvelinus fontinalis Mitchill). Mol. Biol. Evol. 10:1993;1002-1014
14. Bolivar R.B., Newkirk G.F. Response to selection for body weight of Nile tilapia in different culture environments. Fitzsimmons K., Carvalho Filho J. Tilapia Aquaculture in the 21st Century. Proceedings from the Fifth International Symposium on Tilapia in Aquaculture. vol. 1:2000;12-23 Ministry of Agriculture, Rio de Janeiro, Brazil
15. Bolivar R.B., Newkirk G.F. Response to within family selection for body weight in Nile tilapia (Oreochromis niloticus) using a single-trait animal model. Aquaculture. 204:2002;371-381
16. Cavalli-Sforza L.L., Edwards A.W.F. Phylogenetic analysis: models and estimation procedures. Evolution. 21:1967;550-570
17. Costa-Pierce B.A., Doyle R.W. Genetic identification and status of tilapia strains in southern California. Costa-Pierce B.A., Rakocy J.A. Tilapia Aquaculture in the Americas. vol. I:1997;1-17 World Aquaculture Society, Baton Rouge, Lousiana
18. Davis G.P., Hetzel D.J.S. Integrating molecular genetic technology with traditional approaches for genetic improvement in aquaculture species. Aquac. Res. 31:2000;3-10
19. Eknath A.E., Tayamen M.M., Palada-Vera M.S., Danting J.C., Reyes R.A., Dionisio E.E., Capili J.B., Bolivar H.L., Abella T.A., Circa A.V., Bentsen H.B., Gjerde B., Gjedrem T., Pullin R.S.V. Genetic improvement of farmed tilapias: the growth performance of eight strains of Oreochromis niloticus tested in different farm environments. Aquaculture. 111:1993;171-188
20. Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package) Version 3.5. Website: http://evolution.genetics.washington.edu/phylip.html.
21. Ferris S.D., Berg W.J. The utility of mitochondrial DNA in fish genetics and fisheries management. Ryman N., Utter F. Population Genetics and Fishery Management. 1988;277-299 University of Washington Press, Seattle, Washington
22. Fitzsimmons K. Tilapia: the most important aquaculture species of the 21st century. Fitzsimmons K., Carvalho Filho J. Tilapia Aquaculture in the 21st Century. Proceedings from the Fifth International Symposium on Tilapia in Aquaculture. vol. 1:2000;3-10 Ministry of Agriculture, Rio de Janeiro, Brazil
23. Food and Agriculture Organization, 2001. Fisheries statistics. Website: http://www.fao.org/fi/statist/summtab/default.asp.
24. Fuerst P.A., Mwanja W.W., Kaufman L. The genetic history of the introduced Nile Tilapia of Lake Victoria (Uganda-E.Africa): the population structure of Oreochromis niloticus (Pisces: Cichlidae) revealed by DNA microsatellite markers. Fitzsimmons K., Carvalho Filho J. Tilapia Aquaculture in the 21st Century. Proceedings from the Fifth International Symposium on Tilapia in Aquaculture. vol. 1:2000;30-41 Ministry of Agriculture, Rio de Janeiro, Brazil
25. Galman, O.R., Avtalion, R.R., 1983. A preliminary investigation of the characteristics of red tilapias from the Philippines and Taiwan. In: Fishelson, L., Yaron, Z. (Comps.), Proceedings of the International Symposium on Tilapia in Aquaculture, 8-13 May 1983. Nazareth, Israel. Tel Aviv University, Ramat Aviv, Israel, pp. 291-301.
26. Galman, O.R., Moreau, J., Avtalion, R., 1988. Breeding characteristics and growth performance of Philippine red tilapia. In: Pullin, R.S.V., Bhukaswan, T., Tonguthai, K., Maclean, J.L., (Eds.), The Second International Symposium on Tilapia in Aquaculture, ICLARM Conference Proceedings 15, 623 pp. Department of Fisheries, Bangkok, Thailand and International Center for Living Aquatic Resources Management, Manila, Philippines, pp. 169-175.
27. Hallerman E.M., Dunham R.A., Smitherman R.O. Selection or drift-isozyme allele frequency changes among channel catfish selected for rapid growth. Trans. Am. Fish. Soc. 115:1986;60-68
28. Harris A.S., Berger S., Doyle R.W., Wright J.M. DNA fingerprinting of tilapia, Oreochromis niloticus and its application to aquaculture genetics. Aquaculture. 92:1991;157-163
29. Kocher T.D., Lee W.J., Sobolewska H., Penman D., McAndrew B.J. A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics. 148:1998;1225-1232
30. Lee W.J., Kocher T.D. Microsatellite DNA markers for genetic mapping in the tilapia, Oreochromis niloticus. J. Fish Biol. 49:1996;169-171
31. Liao, I.C., Chen, T.P., 1983. Status and prospects of tilapia culture in Taiwan. In: Fishelson, L., Yaron, Z. (Comps.), Proceedings of the International Symposium on Tilapia in Aquaculture, 8-13 May 1983. Nazareth, Israel. Tel Aviv University, Ramat Aviv, Israel, pp. 588-598.
32. Lima F.M., Costa F.H.F., Sampaio A.H., Saker-Sampaio S., Cavada B.S., Rocha I.R.C.B., Cidrack D.S., Galdino A.S., Rego P.S., Cunha R.M.S., Lima H.C., Alves M.A.O., Grangeiro T.B. Genetic variability using molecular markers (RAPD) in species and hybrids of tilapias (Pisces, Cichlidae). Fitzsimmons K., Carvalho Filho J. Tilapia Aquaculture in the 21st Century. Proceedings from the Fifth International Symposium on Tilapia in Aquaculture. vol. 1:2000;41-47 Ministry of Agriculture, Rio de Janeiro, Brazil
33. Lovshin L.L. Criteria for selecting Nile tilapia and red tilapia for culture. Fitzsimmons K., Carvalho Filho J. Tilapia Aquaculture in the 21st Century. Proceedings from the Fifth International Symposium on Tilapia in Aquaculture. vol. 1:2000;49-57 Ministry of Agriculture, Rio de Janeiro, Brazil
34. Macaranas J.M., Taniguchi N., Pante M.J.R., Capili J.B., Pullin R.S.V. Electrophoretic evidence for extensive hybrid gene introgression into commercial Oreochromis niloticus L. stocks in the Philippines. Aquac. Fish. Manage. 17:1986;249-258
35. Macaranas J.M., Agustin L.Q., Ablan M.C.A., Pante M.J.R., Eknath A.E., Pullin R.S.V. Genetic improvement of farmed tilapias: biochemical characterization of strain differences in Nile tilapia. Aquac. Int. 3:1995;43-54
36. Macintosh D.J., Little D.C. Nile tilapia (Oreochromis niloticus). Bromage N., Roberts R.J. Broodstock management and egg and larval quality. 1995;277-320 Blackwell, United Kindom
37. Mair G.C., Abucay J.S., Beardmore J.A., Skibinski D.O.F. Growth performance trials of genetically male (GMT) derived from YY-males in Oreochromis niloticus L. On-station comparisons with mixed sex and sex reversed male populations. Aquaculture. 137:1995;313-322
38. McAndrew B.J., Majumdar K.C. Tilapia stock identification using electrophoretic markers. Aquaculture. 30:1983;249-261
39. Moritz C., Dowling T.E., Brown W.M. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Ann. Rev. Ecolog. Syst. 18:1987;269-292
40. Nei M. Molecular Evolutionary Genetics. 1987;276-279 Columbia Univ. Press, New York
41. O'Connell M., Wright J.M. Microsatellite DNA in fishes. Rev. Fish Biol. Fish. 7:1997;331-363
42. Pante, M.J.R., Lester, L.J., Pullin, R.S.V., 1988. A preliminary study on the use of canonical discriminant analysis of morphometric and meristic characters to identify cultured tilapias. In: Pullin, R.S.V., Bhukaswan, T., Tonguthai, K., Maclean, J.L. (Eds.). The Second International Symposium on Tilapia in Aquaculture ICLARM Conference Proceedings 15. Department of Fisheries, Bangkok, Thailand and International Center for Living Aquatic Resources Management, Manila, Philippines, pp. 251-257.
43. Poompuang S., Hallerman E.M. Toward detection of quantitative trait loci and marker-assisted selection in fish. Reviews Fish. Sci. 5:1997;253-277
44. Pullin R.S.V. Tilapia Genetic Resources for Aquaculture. ICLARM Conference Proceedings 16:1988;International Center for Living Aquatic Resources Management, Manila, Philippines. 108 pp.
45. Pullin, R.S.V., Capili, J.B., 1988. Genetic improvement of tilapias: problems and prospects. In: Pullin, R.S.V., Bhukaswan, T., Tonguthai, K., Maclean, J.L. (Eds.), The Second International Symposium on Tilapia in Aquaculture ICLARM Conference Proceedings 15. Department of Fisheries, Bangkok, Thailand and International Center for Living Aquatic Resources Management, Manila, Philippines, pp. 259-265.
46. Raymond M., Rouset F. GENEPOP: population genetics software for exact tests and ecumenism, Ver. 1.2. J. Heredity. 86:1995;248-249
47. Rice W.R. Analyzing tables of statistical tests. Evolution. 43:1989;223-225
48. Romana-Eguia M.R.R., Eguia R.V. Growth of five Asian red tilapia strains in saline environments. Aquaculture. 173:1999;161-170
49. Ruzzante D.E. A comparison of several measures of genetic distance and population structure with microsatellite data: bias and sampling variance. Can. J. Fish. Aquat. Sci. 55:1998;1-14
50. Schneider S., Roessli D., Excoffier L. Arlequin, Ver. 2.0. A Software for Population Genetic Data Analysis. 2000;Genetics and Biometry Laboratory, University of Geneva, Switzerland. URL: http://anthro.unige.ch/arlequin
51. SEAFDEC Asian Aquaculture Update on BFAR's saline tilapia breeding. SEAFDEC Asian Aquaculture. vol. XXIII. Nos. 3-4:2001;34-35 Southeast Asian Fisheries Development Center, Tigbauan, Iloilo, Philippines
52. Seyoum S., Kornfield I. Identification of the subspecies of Oreochromis niloticus (Pisces: Cichlidae) using restriction endonuclease analysis of mitochondrial DNA. Aquaculture. 102:1992;29-42
53. Shaw P.W., Turan C., Wright J.M., O'Connell M., Carvalho G.R. Microsatellite DNA analysis of population structure in Atlantic herring (Clupea harengus), with direct comparison to allozyme and mtDNA RFLP analyses. Heredity. 83:1999;490-499
54. Takagi M., Taniguchi N., Cook D., Doyle R.W. Isolation and characterization of microsatellite loci from red sea bream, Pagrus major and detection in closely related species. Fish. Sci. 63:1997;199-204
55. Taniguchi N., Yamazaki M., Takagi M., Tsujimura A. Genetic and environmental variances of body size and morphological traits in communally reared clonal lines from gynogenetic diploid ayu, Plecoglossus altivelis. Aquaculture. 140:1996;333-341
56. Taniguchi N., Takagi M., Matsumoto S. Genetic evaluation of quantitative and qualitative traits of hatchery stocks for aquaculture in red sea bream. Bull. Natl. Res. Inst. Aquac. (Suppl. 3):1997;35-41
57. Taniguchi N., Perez-Enriquez R., Nugroho E. DNA markers as a tool for genetic management of broodstock for aquaculture. Shimizu N., Aoki T., Hirono I., Takashima F. Aquatic Genomics - Steps Toward a Great Future. 2003;417-429 Springer, Tokyo
58. Tayamen M.M., Reyes R.A., Danting M.J., Mendoza A.M., Marquez E.B., Salguet A.C., Gonzales R.C., Abella T.A., Vera-Cruz E.M. Tilapia broodstock development for saline waters in the Philippines, Naga. The ICLARM Quart. 25(1):2002;32-36
59. Tuan P.A., Mair G.C., Little D.C., Beardmore J.A. Sex determination and the feasibility of genetically male tilapia production in the Thai-Chitralada strain of Oreochromis niloticus (L.). Aquaculture. 173:1999;257-270
60. Watanabe W.O., Olla B.L., Wicklund R.I., Head W.D. Saltwater culture of the Florida red tilapia and other salt-tolerant tilapias: a review. Costa-Pierce B.A., Rakocy J.E. Tilapia Aquaculture in the Americas. vol. 1:1997;54-141 World Aquaculture Society, Baton Rouge, LA
61. Wohlfarth G.W., Rothbard S., Hulata G., Szweigman D. Inheritance of red body coloration in Taiwanese tilapias and in Oreochromis mossambicus. Aquaculture. 84:1990;219-234
62. Wright J.M., Bentzen P. Microsatellites: genetic markers for the future. Rev. Fish Biol. Fish. 4:1994;384-388