-
1
-
-
0032542757
-
Local dynamics in DNA by temperature-dependent Stokes shift of an intercalated dye
-
Brauns,E.B., Murphy,C.J. and Berg,M.A. (1998) Local dynamics in DNA by temperature-dependent Stokes shift of an intercalated dye. J. Am. Chem. Soc., 120, 2449-2456.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 2449-2456
-
-
Brauns, E.B.1
Murphy, C.J.2
Berg, M.A.3
-
2
-
-
0033596294
-
Measurement of local DNA reorganization on the picosecond and nanosecond time scales
-
Brauns,E.B., Madaras,M.L., Coleman,R.S., Murphy,C.J. and Berg,M.A. (1999) Measurement of local DNA reorganization on the picosecond and nanosecond time scales. J. Am. Chem. Soc., 121, 11644-11649.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 11644-11649
-
-
Brauns, E.B.1
Madaras, M.L.2
Coleman, R.S.3
Murphy, C.J.4
Berg, M.A.5
-
3
-
-
19044393709
-
Complex local dynamics in DNA on the picosecond and nanosecond time scales
-
Brauns,E.B., Madaras,M.L., Coleman,R.S., Murphy,C.J. and Berg,M.A. (2002) Complex local dynamics in DNA on the picosecond and nanosecond time scales. Phys. Rev. Lett., 88, 158101.
-
(2002)
Phys. Rev. Lett.
, vol.88
, pp. 158101
-
-
Brauns, E.B.1
Madaras, M.L.2
Coleman, R.S.3
Murphy, C.J.4
Berg, M.A.5
-
4
-
-
0141732256
-
Sodium-ion binding to DNA: Detection by ultrafast time-resolved Stokes shift spectroscopy
-
Gearheart,L., Somoza,M.M., Rivers,W.E., Murphy,C.J., Coleman,R.S. and Berg,M.A. (2003) Sodium-ion binding to DNA: Detection by ultrafast time-resolved Stokes shift spectroscopy. J. Am. Chem. Soc., 125, 11812-11813.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 11812-11813
-
-
Gearheart, L.1
Somoza, M.M.2
Rivers, W.E.3
Murphy, C.J.4
Coleman, R.S.5
Berg, M.A.6
-
5
-
-
0034721472
-
Ultrafast internal conversion of electronically excited RNA and DNA nucleosides in water
-
Pecourt,J.M.L., Peon,J. and Kohler,B. (2000) Ultrafast internal conversion of electronically excited RNA and DNA nucleosides in water. J. Am. Chem Soc., 122, 9348-9349.
-
(2000)
J. Am. Chem Soc.
, vol.122
, pp. 9348-9349
-
-
Pecourt, J.M.L.1
Peon, J.2
Kohler, B.3
-
6
-
-
0000432163
-
Synthesis of a novel coumarin C-riboside as a photophysical probe of oligonucleotide dynamics
-
Coleman,R.S. and Madaras,M.L. (1998) Synthesis of a novel coumarin C-riboside as a photophysical probe of oligonucleotide dynamics. J. Org. Chem, 63, 5700-5703.
-
(1998)
J. Org. Chem.
, vol.63
, pp. 5700-5703
-
-
Coleman, R.S.1
Madaras, M.L.2
-
7
-
-
0042956534
-
Picosecond solvation dynamics of coumarin 153: The importance of molecular aspects of solvation
-
Maroncelli,M. and Fleming,G.R. (1987) Picosecond solvation dynamics of coumarin 153: the importance of molecular aspects of solvation. J. Chem. Phys., 86, 6221-6239.
-
(1987)
J. Chem. Phys.
, vol.86
, pp. 6221-6239
-
-
Maroncelli, M.1
Fleming, G.R.2
-
8
-
-
0001273546
-
Solvent effects on electronic transitions in several coumarins
-
Moog,R.S., Davis,W.W., Ostrowski,S.G. and Wilson,G.L. (1999) Solvent effects on electronic transitions in several coumarins. Chem. Phys. Lett., 299, 265-271.
-
(1999)
Chem. Phys. Lett.
, vol.299
, pp. 265-271
-
-
Moog, R.S.1
Davis, W.W.2
Ostrowski, S.G.3
Wilson, G.L.4
-
9
-
-
33751271923
-
The dynamics of solvation in polar liquids
-
Maroncelli,M. (1993) The dynamics of solvation in polar liquids. J. Mol. Liq., 57, 1-37.
-
(1993)
J. Mol. Liq.
, vol.57
, pp. 1-37
-
-
Maroncelli, M.1
-
10
-
-
0040731311
-
Time-resolved spectroscopic measurements on microscopic solvation dynamics
-
Nagarajan,V., Brearley,A.M., Kang,T.-J. and Barbara,P.F. (1987) Time-resolved spectroscopic measurements on microscopic solvation dynamics. J. Chem. Phys., 86, 3183-3196.
-
(1987)
J. Chem. Phys.
, vol.86
, pp. 3183-3196
-
-
Nagarajan, V.1
Brearley, A.M.2
Kang, T.-J.3
Barbara, P.F.4
-
13
-
-
0030920687
-
Site-specific dynamics in DNA: Experiments
-
Robinson,B.H., Mailer,C. and Drobny,G. (1997) Site-specific dynamics in DNA: experiments. Annu. Rev. Biophys Biomol. Struct., 26, 629-658.
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 629-658
-
-
Robinson, B.H.1
Mailer, C.2
Drobny, G.3
-
14
-
-
0031585991
-
Kinetics of DNA hydration
-
Denisov,V.P., Carlstrom,G., Venu,K. and Halle,B. (1997) Kinetics of DNA hydration. J. Mol. Biol., 268, 118-136.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 118-136
-
-
Denisov, V.P.1
Carlstrom, G.2
Venu, K.3
Halle, B.4
-
15
-
-
0037007088
-
Phosphate backbone neutralization increases duplex DNA flexibility: A model for protein binding
-
Okonogi,T.M., Alley,S.C., Harwood,E.A., Hopkins,P.B. and Robinson,B.H. (2002) Phosphate backbone neutralization increases duplex DNA flexibility: a model for protein binding. Proc. Natl Acad. Sci. USA, 99, 4156-4160.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4156-4160
-
-
Okonogi, T.M.1
Alley, S.C.2
Harwood, E.A.3
Hopkins, P.B.4
Robinson, B.H.5
-
16
-
-
0035969959
-
Probing structure and dynamics of DNA with 2-aminopurine: Effects of local environment on fluorescence
-
Rachofsky,E.L., Osman,R. and Ross,J.B.A. (2001) Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence. Biochemistry, 40, 946-956.
-
(2001)
Biochemistry
, vol.40
, pp. 946-956
-
-
Rachofsky, E.L.1
Osman, R.2
Ross, J.B.A.3
-
17
-
-
0000166387
-
Fluorescence studies of nucleic acids: Dynamics, rigidity and structures
-
Lakowicz,J.R. (ed.), Plenum Press, New York
-
Schurr,J., Fujimoto,B.S., Wu,P. and Song,L. (1992) Fluorescence studies of nucleic acids: dynamics, rigidity and structures. In Lakowicz,J.R. (ed.), Topics in Fluorescence Spectroscopy: Biochemical Applications. Plenum Press, New York, Vol. 3, pp. 137-222.
-
(1992)
Topics in Fluorescence Spectroscopy: Biochemical Applications
, vol.3
, pp. 137-222
-
-
Schurr, J.1
Fujimoto, B.S.2
Wu, P.3
Song, L.4
-
18
-
-
0034053141
-
Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: A transient polarization grating study
-
Naimushin,A.N., Fujimoto,B.S. and Schurr,J.M. (2000) Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: a transient polarization grating study. Biophys. J., 78, 1498-1518.
-
(2000)
Biophys. J.
, vol.78
, pp. 1498-1518
-
-
Naimushin, A.N.1
Fujimoto, B.S.2
Schurr, J.M.3
-
20
-
-
5844252510
-
Solvatochromic dyes as solvent polarity indicators
-
Reichardt,C. (1994) Solvatochromic dyes as solvent polarity indicators. Chem. Rev., 94, 2319-2358.
-
(1994)
Chem. Rev.
, vol.94
, pp. 2319-2358
-
-
Reichardt, C.1
-
21
-
-
33646102263
-
Dipole solvation in nondipolar solvents: Experimental studies of reorganization energies and solvation dynamics
-
Reynolds,L., Gardecki,J.A., Frankland,S.J.V., Horng,M.L. and Maroncelli,M. (1996) Dipole solvation in nondipolar solvents: experimental studies of reorganization energies and solvation dynamics. J. Phys. Chem., 100, 10337-10354.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 10337-10354
-
-
Reynolds, L.1
Gardecki, J.A.2
Frankland, S.J.V.3
Horng, M.L.4
Maroncelli, M.5
-
22
-
-
0022004980
-
Electron transfers in chemistry and biology
-
Marcus,R.A. and Sutin,N. (1985) Electron transfers in chemistry and biology. Biochim. Biophys. Acta, 811, 265-322.
-
(1985)
Biochim. Biophys. Acta
, vol.811
, pp. 265-322
-
-
Marcus, R.A.1
Sutin, N.2
-
24
-
-
0028464250
-
Dynamics of chemical processes in polar solvents
-
Rossky,P.J. and Simon,J.D. (1994) Dynamics of chemical processes in polar solvents. Nature, 370, 263-269.
-
(1994)
Nature
, vol.370
, pp. 263-269
-
-
Rossky, P.J.1
Simon, J.D.2
-
25
-
-
0002200553
-
Ultrafast photochemical intramolecular charge and excited state solvation
-
Barbara,P.F. and Jarzeba,W. (1990) Ultrafast photochemical intramolecular charge and excited state solvation. Adv. Photochem., 15, 1-68.
-
(1990)
Adv. Photochem.
, vol.15
, pp. 1-68
-
-
Barbara, P.F.1
Jarzeba, W.2
-
26
-
-
0030217515
-
Nonreactive dynamics in solution: The emerging molecular view of solvation dynamics and vibrational relaxation
-
Stratt,R.M. and Maroncelli,M. (1996) Nonreactive dynamics in solution: the emerging molecular view of solvation dynamics and vibrational relaxation. J. Phys. Chem., 100, 12981-12996.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 12981-12996
-
-
Stratt, R.M.1
Maroncelli, M.2
-
28
-
-
0035829210
-
Two-dimensional Fourier transform electronic spectroscopy
-
Hybl,J.D., Ferro,A.A. and Jonas,D.M. (2001) Two-dimensional Fourier transform electronic spectroscopy. J. Chem. Phys., 115, 6606-6622.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 6606-6622
-
-
Hybl, J.D.1
Ferro, A.A.2
Jonas, D.M.3
-
29
-
-
0141615497
-
Solvation dynamics in a protein-surfactant aggregate. TNS in HSA-SDS
-
Mukherjee,S., Sen,P., Halder,A., Sen,S., Dutta,P. and Bhattacharyya,K. (2003) Solvation dynamics in a protein-surfactant aggregate. TNS in HSA-SDS. Chem. Phys. Lett., 379, 471-478.
-
(2003)
Chem. Phys. Lett.
, vol.379
, pp. 471-478
-
-
Mukherjee, S.1
Sen, P.2
Halder, A.3
Sen, S.4
Dutta, P.5
Bhattacharyya, K.6
-
30
-
-
0142135186
-
Ultrafast fluorescence relaxation spectroscopy of 6,7-dimethyl-(8-ribityl)-lumazine and riboflavin, free and bound to antenna proteins from bioluminescent bacteria
-
Petushkov,V.N., van Stokkum,I.H.M., Gobets,B., van Mourik,F., Lee,J., van Grondelle,R. and Visser,A. (2003) Ultrafast fluorescence relaxation spectroscopy of 6,7-dimethyl-(8-ribityl)-lumazine and riboflavin, free and bound to antenna proteins from bioluminescent bacteria. J. Phys. Chem. B, 107, 10934-10939.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 10934-10939
-
-
Petushkov, V.N.1
van Stokkum, I.H.M.2
Gobets, B.3
van Mourik, F.4
Lee, J.5
van Grondelle, R.6
Visser, A.7
-
31
-
-
0037421926
-
Femtosecond transient absorption study of the dynamics of acrylodan in solution and attached to human serum albumin
-
Buzady,A., Savolainen,J., Erostyak,J., Myllyperkio,P., Somogyi,B. and Korppi-Tommola,J. (2003) Femtosecond transient absorption study of the dynamics of acrylodan in solution and attached to human serum albumin. J. Phys. Chem. B, 107, 1208-1214.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 1208-1214
-
-
Buzady, A.1
Savolainen, J.2
Erostyak, J.3
Myllyperkio, P.4
Somogyi, B.5
Korppi-Tommola, J.6
-
32
-
-
0037422580
-
Flexibility and molecular recognition in the immune system
-
Jimenez,R., Salazar,G., Baldridge,K.K. and Romesberg,F.E. (2003) Flexibility and molecular recognition in the immune system. Proc. Natl Acad. Sci. USA, 100, 92-97.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 92-97
-
-
Jimenez, R.1
Salazar, G.2
Baldridge, K.K.3
Romesberg, F.E.4
-
33
-
-
0037180421
-
Ultrafast surface hydration dynamics and expression of protein functionality: Alpha-chymotrypsin
-
Pal,S.K., Peon,J. and Zewail,A.H. (2002) Ultrafast surface hydration dynamics and expression of protein functionality: alpha-chymotrypsin. Proc. Natl Acad. Sci. USA, 99, 15297-15302.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15297-15302
-
-
Pal, S.K.1
Peon, J.2
Zewail, A.H.3
-
34
-
-
0037204951
-
Probing protein electrostatics with a synthetic fluorescent amino acid
-
Cohen,B.E., McAnaney,T.B., Park,E.S., Jan,Y.N., Boxer,S.G. and Jan,L.Y. (2002) Probing protein electrostatics with a synthetic fluorescent amino acid. Science, 296, 1700-1703.
-
(2002)
Science
, vol.296
, pp. 1700-1703
-
-
Cohen, B.E.1
McAnaney, T.B.2
Park, E.S.3
Jan, Y.N.4
Boxer, S.G.5
Jan, L.Y.6
-
36
-
-
0034301060
-
Ultrafast dielectric response of proteins from dynamics Stokes shifting of coumarin in calmodulin
-
Changenet-Barret,P., Choma,C.T., Gooding,E.F., DeGrado,W.F. and Hochstrasser,R.M. (2000) Ultrafast dielectric response of proteins from dynamics Stokes shifting of coumarin in calmodulin. J. Phys. Chem. B, 104, 9322-9329.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 9322-9329
-
-
Changenet-Barret, P.1
Choma, C.T.2
Gooding, E.F.3
DeGrado, W.F.4
Hochstrasser, R.M.5
-
37
-
-
0000405834
-
Solvation dynamics in protein environments studied by photon echo spectroscopy
-
Jordanides,X.J., Lang,M.J., Song,X.Y. and Fleming,G.R. (1999) Solvation dynamics in protein environments studied by photon echo spectroscopy. J. Phys. Chem. B, 103, 7995-8005.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 7995-8005
-
-
Jordanides, X.J.1
Lang, M.J.2
Song, X.Y.3
Fleming, G.R.4
-
38
-
-
0001632125
-
Stimulated photon-echo and transient-grating studies of protein-matrix solvation dynamics and interexciton-state radiationless decay in alpha phycocyanin and allophycocyanin
-
Homoelle,B.J., Edington,M.D., Diffey,W.M. and Beck,W.F. (1998) Stimulated photon-echo and transient-grating studies of protein-matrix solvation dynamics and interexciton-state radiationless decay in alpha phycocyanin and allophycocyanin. J. Phys. Chem. B, 102, 3044-3052.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3044-3052
-
-
Homoelle, B.J.1
Edington, M.D.2
Diffey, W.M.3
Beck, W.F.4
-
39
-
-
0034036078
-
Nucleic acids: Theory and computer simulation, Y2K
-
Beveridge,D.L. and McConnell,K.J. (2000) Nucleic acids: theory and computer simulation, Y2K. Curr. Opin. Struct. Biol., 10, 182-196.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 182-196
-
-
Beveridge, D.L.1
McConnell, K.J.2
-
40
-
-
0033654654
-
Molecular dynamics simulation of nucleic acids
-
Cheatham,T.E. and Kollman,P.A. (2000) Molecular dynamics simulation of nucleic acids. Annu. Rev. Phys. Chem., 51, 435-471.
-
(2000)
Annu. Rev. Phys. Chem.
, vol.51
, pp. 435-471
-
-
Cheatham, T.E.1
Kollman, P.A.2
-
41
-
-
14244271476
-
Molecular dynamics simulation of nucleic acids: Successes, limitations and promise
-
Cheatham,T.E. and Young,M.A. (2001) Molecular dynamics simulation of nucleic acids: successes, limitations and promise. Biopolymers, 56, 232-256.
-
(2001)
Biopolymers
, vol.56
, pp. 232-256
-
-
Cheatham, T.E.1
Young, M.A.2
-
42
-
-
0001635778
-
Characterization of the minor groove environment in a drug-DNA complex: Bisbenzimide bound to the poly[d(AT)·poly[d(AT)] duplex
-
Jin,R. and Breslauer,K.J. (1988) Characterization of the minor groove environment in a drug-DNA complex: bisbenzimide bound to the poly[d(AT)·poly[d(AT)] duplex. Proc. Natl Acad. Sci. USA, 85, 8939-8942.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 8939-8942
-
-
Jin, R.1
Breslauer, K.J.2
-
43
-
-
0028832014
-
Fluorescent d(CGCGAATTCGCG) - Characterization of major groove polarity and study of minor groove interactions through a major groove semantophore conjugate
-
Barawkar,D.A. and Ganesh,K.N. (1995) Fluorescent d(CGCGAATTCGCG) - characterization of major groove polarity and study of minor groove interactions through a major groove semantophore conjugate. Nucleic Acids Res., 23, 159-164.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 159-164
-
-
Barawkar, D.A.1
Ganesh, K.N.2
-
44
-
-
0343091720
-
Polarity sensing by fluorescent oligonucleotides: First demonstration of sequence-dependent microenvironmental changes in the DNA major groove
-
Jadhav,V.R., Barawkar,D.A. and Ganesh,K.N. (1999) Polarity sensing by fluorescent oligonucleotides: first demonstration of sequence-dependent microenvironmental changes in the DNA major groove. J. Phys. Chem. B, 103, 7383-7385.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 7383-7385
-
-
Jadhav, V.R.1
Barawkar, D.A.2
Ganesh, K.N.3
-
45
-
-
0037816372
-
Water at DNA surfaces: Ultrafast dynamics in minor groove recognition
-
Pal,S.K., Zhao,L.A. and Zewail,A.H. (2003) Water at DNA surfaces: ultrafast dynamics in minor groove recognition. Proc. Natl Acad. Sci. USA, 100, 8113-8118.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8113-8118
-
-
Pal, S.K.1
Zhao, L.A.2
Zewail, A.H.3
-
46
-
-
0033560675
-
Damage increases the flexibility of duplex DNA
-
Marathias,V.M., Jerkovic,B. and Bolton,P.H. (1999) Damage increases the flexibility of duplex DNA. Nucleic Acids Res., 27, 1854-1858.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1854-1858
-
-
Marathias, V.M.1
Jerkovic, B.2
Bolton, P.H.3
-
47
-
-
0033961333
-
The impact of abasic sites on DNA flexibility
-
Ayadi,L., Coulombeau,C. and Laery,R. (2000) The impact of abasic sites on DNA flexibility. J. Biomol. Struct. Dyn., 17, 645-653.
-
(2000)
J. Biomol. Struct. Dyn.
, vol.17
, pp. 645-653
-
-
Ayadi, L.1
Coulombeau, C.2
Laery, R.3
-
48
-
-
0015504248
-
Rate of depurination of native deoxyribonucleic acid
-
Lindahl,T. and Nyberg,B. (1973) Rate of depurination of native deoxyribonucleic acid. Biochemistry, 11, 3610-3618.
-
(1973)
Biochemistry
, vol.11
, pp. 3610-3618
-
-
Lindahl, T.1
Nyberg, B.2
-
49
-
-
0035837587
-
The major human abasic endonuclease: Formation, consequences and repair of abasic lesions in DNA
-
Wilson,D.M. and Barsky,D. (2001) The major human abasic endonuclease: formation, consequences and repair of abasic lesions in DNA. Mutat. Res., 485, 283-307.
-
(2001)
Mutat. Res.
, vol.485
, pp. 283-307
-
-
Wilson, D.M.1
Barsky, D.2
-
50
-
-
0002125735
-
Abasic DNA structure, reactivity and recognition
-
Lhomme,J., Constant,J.-F. and Demeunynck,M. (2000) Abasic DNA structure, reactivity and recognition. Biopolymers, 52, 65-83.
-
(2000)
Biopolymers
, vol.52
, pp. 65-83
-
-
Lhomme, J.1
Constant, J.-F.2
Demeunynck, M.3
-
51
-
-
0030989228
-
DNA excision repair pathways
-
Lindahl,T., Karran,P. and Wood,R.D. (1997) DNA excision repair pathways. Curr. Opin. Genet. Dev., 7, 158-169.
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, pp. 158-169
-
-
Lindahl, T.1
Karran, P.2
Wood, R.D.3
-
52
-
-
4243896046
-
Standard reference materials: A fluorescence standard reference material: Quinine sulfate dihydrate
-
Velapoldi,R.A. and Mielenz,K.D. (1980) Standard reference materials: a fluorescence standard reference material: quinine sulfate dihydrate. Natl Bur. Stand. (U.S.) Sec. Publ., pp. 260-64.
-
(1980)
Natl. Bur. Stand. (U.S.) Sec. Publ.
, pp. 260-264
-
-
Velapoldi, R.A.1
Mielenz, K.D.2
-
56
-
-
0002983460
-
Time-domain fluorescence spectroscopy using time-correlated single-photon counting
-
Lakowicz,J.R. (ed.), Plenum Press, New York
-
Birch,D.S. and Imhof,R.E. (1991) Time-domain fluorescence spectroscopy using time-correlated single-photon counting. In Lakowicz,J.R. (ed.), Topics in Fluorescence Spectroscopy: Techniques. Plenum Press, New York, Vol. 1, pp. 1-95.
-
(1991)
Topics in Fluorescence Spectroscopy: Techniques
, vol.1
, pp. 1-95
-
-
Birch, D.S.1
Imhof, R.E.2
-
57
-
-
0025640758
-
Artifacts and diagnostics in fast fluorescence measurements
-
Lakowicz,J.R. (ed.), SPIE, Bellingham, WA
-
Holtom,G.R. (1990) Artifacts and diagnostics in fast fluorescence measurements. In Lakowicz,J.R. (ed.), Time-Resolved Laser Spectroscopy in Biochemistry II. SPIE, Bellingham, WA, Vol. 1204, pp. 2-12.
-
(1990)
Time-Resolved Laser Spectroscopy in Biochemistry II
, vol.1204
, pp. 2-12
-
-
Holtom, G.R.1
-
58
-
-
0002647421
-
Laser sources and microchannel plate detectors for pulse fluorometry
-
Lakowicz,J.R. (ed.), Plenum Press, New York
-
Small,E.W. (1991) Laser sources and microchannel plate detectors for pulse fluorometry. In Lakowicz,J.R. (ed.), Topics in Fluorescence Spectroscopy: Techniques. Plenum Press, New York, Vol. 1, pp. 97-182.
-
(1991)
Topics in Fluorescence Spectroscopy: Techniques
, vol.1
, pp. 97-182
-
-
Small, E.W.1
-
59
-
-
33845487668
-
Subpicosecond resolution studies of solvation dynamics in polar aprotic and alcohol solvents
-
Castner,E.W., Maroncelli,M. and Fleming,G.R. (1987) Subpicosecond resolution studies of solvation dynamics in polar aprotic and alcohol solvents. J. Chem. Phys., 86, 1090-1097.
-
(1987)
J. Chem. Phys.
, vol.86
, pp. 1090-1097
-
-
Castner, E.W.1
Maroncelli, M.2
Fleming, G.R.3
-
60
-
-
0029403121
-
Subpicosecond measurements of polar solvation dynamics: Coumarin 153 revisited
-
Horng,M.L., Gardecki,J.A., Papazyan,A. and Maroncelli,M. (1995) Subpicosecond measurements of polar solvation dynamics: coumarin 153 revisited. J. Phys. Chem., 99, 17311-17337.
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 17311-17337
-
-
Horng, M.L.1
Gardecki, J.A.2
Papazyan, A.3
Maroncelli, M.4
-
61
-
-
0004161838
-
-
(2nd edn). Cambridge University Press, Cambridge
-
Press,W.H., Teukolsky,S.A., Vetterling,W.T. and Flannery,P.P. (1992) Numerical Recipes in C (2nd edn). Cambridge University Press, Cambridge.
-
(1992)
Numerical Recipes in C
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, P.P.4
-
62
-
-
0017836325
-
Sodium-23 NMR studies of cation-DNA interactions
-
Anderson,C.F., Record,M.T. and Hart,P.A. (1978) Sodium-23 NMR studies of cation-DNA interactions. Biophys. J., 7, 301-316.
-
(1978)
Biophys. J.
, vol.7
, pp. 301-316
-
-
Anderson, C.F.1
Record, M.T.2
Hart, P.A.3
-
63
-
-
0000398393
-
Temperature-dependent ultrafast solvation dynamics in a completely nonpolar system
-
Fourkas,J.T. and Berg,M. (1993) Temperature-dependent ultrafast solvation dynamics in a completely nonpolar system. J. Chem. Phys., 98, 7773-7785.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 7773-7785
-
-
Fourkas, J.T.1
Berg, M.2
-
64
-
-
0035449227
-
Ultrafast dichroism spectroscopy of anthracene in solution. I. Inertial versus diffusive rotation in benzyl alcohol
-
Zhang,Y., Sluch,M.I., Somoza,M.M. and Berg,M.A. (2001) Ultrafast dichroism spectroscopy of anthracene in solution. I. Inertial versus diffusive rotation in benzyl alcohol. J. Chem. Phys., 115, 4212-4222.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 4212-4222
-
-
Zhang, Y.1
Sluch, M.I.2
Somoza, M.M.3
Berg, M.A.4
-
65
-
-
21344489300
-
Estimating the time-zero spectrum in time-resolved emission measurements of solvation dynamics
-
Fee,R.S. and Maroncelli,M. (1994) Estimating the time-zero spectrum in time-resolved emission measurements of solvation dynamics. Chem. Phys., 183, 235-247.
-
(1994)
Chem. Phys.
, vol.183
, pp. 235-247
-
-
Fee, R.S.1
Maroncelli, M.2
-
66
-
-
0038060719
-
Ultrafast dichroism spectroscopy of anthracene in solution. IV. Merging of inertial and diffusive motions in toluene
-
Zhang,Y., Jiang,J. and Berg,M.A. (2003) Ultrafast dichroism spectroscopy of anthracene in solution. IV. Merging of inertial and diffusive motions in toluene. J. Chem. Phys., 118, 7534-7540.
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 7534-7540
-
-
Zhang, Y.1
Jiang, J.2
Berg, M.A.3
-
67
-
-
0031555709
-
Calculation of dielectric constants near polyelectrolytes in solution
-
Lamm,G. and Pack,G.R. (1997) Calculation of dielectric constants near polyelectrolytes in solution. J. Phys. Chem. B, 101, 959-965.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 959-965
-
-
Lamm, G.1
Pack, G.R.2
-
68
-
-
84983085435
-
An examination of linear solvation energy relationships
-
Kamlet,M.J., Abboud,J.L.M. and Taft,R.W. (1981) An examination of linear solvation energy relationships. Prog. Phys. Org. Chem., 13, 485-631.
-
(1981)
Prog. Phys. Org. Chem.
, vol.13
, pp. 485-631
-
-
Kamlet, M.J.1
Abboud, J.L.M.2
Taft, R.W.3
-
69
-
-
0032546530
-
Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence
-
Gelfand,C.A., Plum,G.E., Grollman,A.P., Johnson,F. and Breslauer,K.J. (1998) Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence. Biochemistry, 37, 7321-7327.
-
(1998)
Biochemistry
, vol.37
, pp. 7321-7327
-
-
Gelfand, C.A.1
Plum, G.E.2
Grollman, A.P.3
Johnson, F.4
Breslauer, K.J.5
-
70
-
-
0025285869
-
The abasic site as a challenge to DNA polymerase. A nuclear magnetic resonance study of G, C and T opposite a model abasic site
-
Cuniasse,P., Gazakerley,G.V., Guschlbauer,W., Kaplan,B.E. and Soweres,L.C. (1990) The abasic site as a challenge to DNA polymerase. A nuclear magnetic resonance study of G, C and T opposite a model abasic site. J. Mol. Biol., 213, 303-314.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 303-314
-
-
Cuniasse, P.1
Gazakerley, G.V.2
Guschlbauer, W.3
Kaplan, B.E.4
Soweres, L.C.5
-
71
-
-
0034234593
-
New insights into the structure of abasic DNA from molecular dynamics simulations
-
Barsky,D., Foloppe,N., Ahmadia,S., Wilson,D.M. and MacKerell,A.D. (2000) New insights into the structure of abasic DNA from molecular dynamics simulations. Nucleic Acids Res., 28, 2613-2626.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2613-2626
-
-
Barsky, D.1
Foloppe, N.2
Ahmadia, S.3
Wilson, D.M.4
MacKerell, A.D.5
-
72
-
-
0029147479
-
Refined solution structure of a DNA heteroduplex containing an aldehydic abasic site
-
Goljer,I., Kumar,S. and Bolton,P.H. (1995) Refined solution structure of a DNA heteroduplex containing an aldehydic abasic site. J. Biol. Chem., 270, 22980-22987.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22980-22987
-
-
Goljer, I.1
Kumar, S.2
Bolton, P.H.3
-
73
-
-
12244267728
-
Sequence-dependent DNA dynamics by scanning force microscopy time-resolved imaging
-
Scipioni,A., Zuccheri,B., Anselmi,C., Bergia,A., Samorì,B. and De Santis,P. (2002) Sequence-dependent DNA dynamics by scanning force microscopy time-resolved imaging. Chem Biol., 9, 1315-1321.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1315-1321
-
-
Scipioni, A.1
Zuccheri, B.2
Anselmi, C.3
Bergia, A.4
Samorì, B.5
De Santis, P.6
-
74
-
-
0028864424
-
Studies of base pair kinetics by NMR measurement of proton exchange
-
Guéron,M. and Leroy,J.-L. (1995) Studies of base pair kinetics by NMR measurement of proton exchange. Methods Enzymol., 261, 383-413.
-
(1995)
Methods Enzymol.
, vol.261
, pp. 383-413
-
-
Guéron, M.1
Leroy, J.-L.2
-
75
-
-
0032787071
-
Flexibility of duplex DNA on the submicrosecond timescale
-
Okonogi,T.M., Reese,A.W., Alley,S.C., Hopkins,P.B. and Robinson,B.H. (1999) Flexibility of duplex DNA on the submicrosecond timescale. Biophys. J., 77, 3256-3276.
-
(1999)
Biophys. J.
, vol.77
, pp. 3256-3276
-
-
Okonogi, T.M.1
Reese, A.W.2
Alley, S.C.3
Hopkins, P.B.4
Robinson, B.H.5
-
76
-
-
0033079847
-
Long-range oxidative damage to DNA: Effects of distance and sequence
-
Núñez,M.E., Hall,D.B. and Barton,J.K. (1999) Long-range oxidative damage to DNA: effects of distance and sequence. Chem. Biol., 6, 85-97.
-
(1999)
Chem. Biol.
, vol.6
, pp. 85-97
-
-
Núñez, M.E.1
Hall, D.B.2
Barton, J.K.3
-
77
-
-
0033797431
-
Long-distance charge transport in DNA: The hopping mechanism
-
Giese,B. (2000) Long-distance charge transport in DNA: the hopping mechanism. Acc. Chem. Res., 33, 631-636.
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 631-636
-
-
Giese, B.1
-
78
-
-
0034058321
-
Long-range charge transfer in DNA: Transient structural distortions control the distance dependence
-
Schuster,G.B. (2000) Long-range charge transfer in DNA: transient structural distortions control the distance dependence. Acc. Chem. Res., 33, 253-260.
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 253-260
-
-
Schuster, G.B.1
-
79
-
-
0034687675
-
Femtosecond direct observation of charge transfer between bases in DNA
-
Wan,C., Fiebig,T., Schiemann,O., Barton,J.K. and Zewail,A.H. (2000) Femtosecond direct observation of charge transfer between bases in DNA. Proc. Natl Acad. Sci. USA, 97, 14052-14505.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 14052-14505
-
-
Wan, C.1
Fiebig, T.2
Schiemann, O.3
Barton, J.K.4
Zewail, A.H.5
-
80
-
-
0033065078
-
Femtosecond dynamics of DNA-mediated electron transfer
-
Wan,C.Z., Fiebig,T., Kelley,S.O., Treadway,C.R., Barton,J.K. and Zewail,A.H. (1999) Femtosecond dynamics of DNA-mediated electron transfer. Proc. Natl Acad. Sci. USA, 96, 6014-6019.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6014-6019
-
-
Wan, C.Z.1
Fiebig, T.2
Kelley, S.O.3
Treadway, C.R.4
Barton, J.K.5
Zewail, A.H.6
-
81
-
-
0027769742
-
Long-range photoinduced electron transfer through a DNA helix
-
Murphy,C.J., Arkin,M.R., Jenkins,Y., Chatlia,N.D., Bossman,S.H., Turro,N.J. and Barton,J.K. (1993) Long-range photoinduced electron transfer through a DNA helix. Science, 262, 1025-1029.
-
(1993)
Science
, vol.262
, pp. 1025-1029
-
-
Murphy, C.J.1
Arkin, M.R.2
Jenkins, Y.3
Chatlia, N.D.4
Bossman, S.H.5
Turro, N.J.6
Barton, J.K.7
-
82
-
-
0034513039
-
Distance dependence of electron transfer in DNA: The role of the reorganization energy and free energy
-
Tavernier,H.L. and Fayer,M.D. (2000) Distance dependence of electron transfer in DNA: the role of the reorganization energy and free energy. J. Phys. Chen B, 104, 11541-11550.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 11541-11550
-
-
Tavernier, H.L.1
Fayer, M.D.2
-
83
-
-
0035950769
-
Electron hole transport in DNA
-
Olofsson,J. and Larsson,S. (2001) Electron hole transport in DNA. J. Phys. Chem. B, 105, 10398-10406.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 10398-10406
-
-
Olofsson, J.1
Larsson, S.2
-
84
-
-
0037035151
-
Tunneling energy effects on GC oxidation in DNA
-
Tong,G.S.M., Kurnikov,I.V. and Beratan,D.N. (2002) Tunneling energy effects on GC oxidation in DNA. J. Phys. Chem. B, 106, 2381-2392.
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 2381-2392
-
-
Tong, G.S.M.1
Kurnikov, I.V.2
Beratan, D.N.3
-
85
-
-
0038062642
-
Estimate of the reorganization energy for charge transfer in DNA
-
Siriwong,K., Voityuk,A.A., Newton,M.D. and Rösch,N. (2003) Estimate of the reorganization energy for charge transfer in DNA. J. Phys. Chem. B, 107, 2595-2601.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 2595-2601
-
-
Siriwong, K.1
Voityuk, A.A.2
Newton, M.D.3
Rösch, N.4
-
86
-
-
0346433991
-
Solvent reorganization energy of charge transfer in DNA hairpins
-
LeBard D.N., Lilichenko,M., Matyushov,D.V., Berlin,Y.A. and Ratner,M.A. (2003) Solvent reorganization energy of charge transfer in DNA hairpins. J. Phys. Chem. B, 107, 14509-14520.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 14509-14520
-
-
LeBard, D.N.1
Lilichenko, M.2
Matyushov, D.V.3
Berlin, Y.A.4
Ratner, M.A.5
-
87
-
-
0035913970
-
Charge migration in DNA: Ion-gated transport
-
Barnett,R.N., Cleveland,C.L., Joy,A., Landman,U. and Schuster,G.B. (2001) Charge migration in DNA: ion-gated transport. Science, 294, 567-571.
-
(2001)
Science
, vol.294
, pp. 567-571
-
-
Barnett, R.N.1
Cleveland, C.L.2
Joy, A.3
Landman, U.4
Schuster, G.B.5
-
88
-
-
0036851660
-
Replacing the micleobases in DNA with designer molecules
-
Kool,E.T. (2002) Replacing the micleobases in DNA with designer molecules. Acc. Chem. Res., 35, 936-943.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 936-943
-
-
Kool, E.T.1
-
89
-
-
0344851941
-
Beyond A. C, G and T: Augmenting Nature's alphabet
-
Henry,A.A. and Romesberg,F.E. (2003) Beyond A. C, G and T: augmenting Nature's alphabet. Curr. Opin. Chem. Biol., 7, 727-733.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 727-733
-
-
Henry, A.A.1
Romesberg, F.E.2
-
90
-
-
0033638325
-
Synthetically modified DNAs as substrates for polymerases
-
Kool,E.T. (2000) Synthetically modified DNAs as substrates for polymerases. Curr. Opin. Chem. Biol., 4, 602-608.
-
(2000)
Curr. Opin. Chem. Biol.
, vol.4
, pp. 602-608
-
-
Kool, E.T.1
-
91
-
-
0034979126
-
Hydrogen bonding, base stacking and steric effects in DNA replication
-
Kool,E.T. (2001) Hydrogen bonding, base stacking and steric effects in DNA replication. Annu. Rev. Biophys Biomol. Struct., 30, 1-22.
-
(2001)
Annu. Rev. Biophys. Biomol. Struct.
, vol.30
, pp. 1-22
-
-
Kool, E.T.1
-
92
-
-
0029818198
-
Naphthalene, phenanthrene and pyrene as DNA base analogues: Synthesis, structure and fluorescence in DNA
-
Ren,.R.X.-F., Chaudhuri,N.C., Paris,P.L., IV,S.R. and Kool,E.T. (1996) Naphthalene, phenanthrene and pyrene as DNA base analogues: synthesis, structure and fluorescence in DNA. J. Am. Chem. Soc., 118, 7671-7678.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 7671-7678
-
-
Ren, R.X.-F.1
Chaudhuri, N.C.2
Paris, P.L.3
Paris IV, S.R.4
Kool, E.T.5
-
93
-
-
0031799177
-
Selective and stable DNA base pairing without hydrogen bonds
-
Matray,T.J. and Kool,E.T. (1998) Selective and stable DNA base pairing without hydrogen bonds. J. Am. Chem. Soc., 120, 6191-6192.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 6191-6192
-
-
Matray, T.J.1
Kool, E.T.2
-
94
-
-
0037115866
-
Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites
-
Smirnov,S., Matray,T.J., Kool,E.T. and de los Santos,C. (2002) Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites. Nucleic Acids Res., 30, 5561-5569.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 5561-5569
-
-
Smirnov, S.1
Matray, T.J.2
Kool, E.T.3
de los Santos, C.4
-
95
-
-
0033578081
-
A specific partner for abasic damage in DNA
-
Matray,T.J. and Kool,E.T. (1999) A specific partner for abasic damage in DNA. Nature, 399, 704-708.
-
(1999)
Nature
, vol.399
, pp. 704-708
-
-
Matray, T.J.1
Kool, E.T.2
-
96
-
-
0037120830
-
Conformational heterogeneity observed in simulations of a pyrene-substituted DNA
-
Cui,G. and Simmerling,C. (2002) Conformational heterogeneity observed in simulations of a pyrene-substituted DNA. J. Am. Chem. Soc., 124, 12154-12164.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12154-12164
-
-
Cui, G.1
Simmerling, C.2
|