The cooperative nature of hydrophobic forces and protein folding kinetics

Chemical Physics

Volumn 316, Issue 1-3, 2005, Pages 53-60

  Wang, Jin ^a,b   Lee, Chilun ^a   Stell, George ^a  

^a STONY BROOK UNIVERSITY   (United States)

^b CHANGCHUN INSTITUTE OF APPLIED CHEMISTRY   (China)

Author keywords

Cooperativity; Kinetic fluctuations; Protein folding kinetics

Indexed keywords

EID: 24344449144     PISSN: 03010104     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemphys.2005.04.045     Document Type: Article

References (57)

1. W. Kauzman Adv. Protein Chem. 14 1958 1
2. P.L. Privalov Adv. Protein Chem. 33 1979 167 35, 1 (1982)
3. J.D. Bryngelson, and P.G. Wolynes J. Phys. Chem. 93 1989 6902
4. J.D. Bryngelson, J.O. Onuchic, N.D. Socci, and P.G. Wolynes Proteins Struc. Funct. Genet. 21 1995 167
5. V.I. Abkevich, A.M. Gutin, and E.I. Shakhnovich J. Chem. Phys. 101 1994 6052
6. H.S. Chan, and K.A. Dill J. Chem. Phys. 100 1994 9238
7. J. Wang, J.O. Onuchic, and P.E. Wolynes Phys. Rev. Lett. 76 1996 4861
8. N.D. Socci, and J.D. Onuchic J. Chem. Phys. 101 1994 1519
9. N.D. Socci, and J.D. Onuchic J. Chem. Phys. 103 1995 4732
10. E.M. Boczko, and C.L. Brooks Science 269 1995 393
11. E.I. Shakhnovich, A. Abkevich, and O. Ptitsyn Nature 379 1996 96
12. J. Wang, J.G. Saven, and P.G. Wolynes J. Chem. Phys. 105 1996 1
13. J.G. Saven, J. Wang, and P.G. Wolynes J. Chem. Phys. 101 1994 1
14. T.R. Sosnick, L. Mayne, R. Hiller, and S.W. Englander Nat. Struct. Biol. 1 1994 149
15. L.S. Itzhaki, D.E. Otzen, and A.R. Fersht J. Mol. Biol. 254 1995 260
16. G.S. Huang, and T.G. Oas Proc. Natl. Acad. Sci. USA 92 1995 6878
17. T. Schindler, M. Herrler, M.A. Marahiel, and F.X. Schmid Nat. Struct. Biol. 2 1995 663
18. T. Kiefhaber, F.X. Schmid, K. Willaert, Y. Engelborghs, and A. Chaffotte Protein Sci. 1 1992 1
19. J. Sabelko, J. Ervin, and M. Gruebele Proc. Natl. Acad. Sci. 96 1999 6031
20. H. Nguyen, M. Jger, A. Moretto, M. Gruebele, and J.W. Kelly Proc. Natl. Acad. Sci. 100 2003 3948
21. B. Schuler, E.A. Lipman, and W.A. Eaton Nature 419 2002 743
22. E.A. Lipman, B. Schuler, O. Bakajin, and W.A. Eaton Science 301 2003 1233
23. M. Sadqi, L.J. Lapidus, and V. Munoz Proc. Natl. Acad. Sci. 100 2003 12117
24. H. Kaya, and H.S. Chan J. Mol. Biol. 315 2002 899
25. H. Kaya, and H.S. Chan Phys. Rev. Lett. 85 2000 4823
26. H. Kaya, and H.S. Chan Proteins 52 2003 524
27. H. Kaya, and H.S. Chan J. Mol. Biol. 326 2003 911
28. H. Kaya, and H.S. Chan Phys. Rev. Lett. 90 2003 258104
29. H.S. Chan, S. Shimizu, and H. Kaya Methods Enzymol. 380 2004 350
30. M.P. Eastwood, and P.G. Wolynes J. Chem. Phys. 114 2001 4702
31. M.R. Ejtehadi, S.P. Avall, and S.S. Plotkin Proc. Natl. Acad. Sci. 101 2004 15088
32. E.I. Shakhnovich, and A.M. Gutin Eur. Phys. Lett. 9 1989 5
33. C.L. Lee, G. Stell, and J. Wang J. Chem. Phys. 118 2003 959
34. S. Plotkin, J. Wang, and P.G. Wolynes Phys. Rev. E. 53 1996 6271
35. S.S. Plotkin, J. Wang, and P.G. Wolynes J. Chem. Phys. 106 1997 2932
36. R.A. Goldstein, Z.A. Luthey-Schulten, and P.G. Wolynes Proc. Natl. Acad. Sci. USA 89 1992 4918
37. C.L. Lee, G. Stell, and J. Wang J. Chem. Phys. 118 2003 959
38. Y. Zhou, Q. Zhang, G. Stell, and J. Wang J. Amer. Chem. Soc. 125 2003 6300
39. V.B.P. Leite, J.N. Onuchic, G. Stell, and J. Wang Biophys. J. 87 2004 3633
40. J. Wang Biophys. J. 87 2004 2164
41. A. Matouschek Nature (London) 346 1990 440
42. W.A. Houry, D.M. Rothwarf, and H.A. Scheraga Nat. Struct. Biol. 2 1995 495
43. T. Kiefhaber Proc. Natl. Acad. Sci. USA 92 1995 9029
44. M. Silow, and M. Oliveberg Proc. Natl. Acad. Sci. USA 94 1997 6084
45. R.-A. Chu, and Y. Bai J. Mol. Biol. 315 2002 759
46. R. Li, J.L. Battiste, and C. Woodward Biochemistry 41 2002 2246
47. R.L. Baldwin Fold. Des. 1 1996 R1
48. B. Kuhlman J. Mol. Biol. 284 1998 1661
49. J. Wang J. Chem. Phys. 118 2003 952
50. X. Zhuang, L.E. Barley, H.P. Babcock, R. Russell, T. Ha, D. Herschlag, and S. Chu Science 288 2000 2048
51. Y. Jia, D.S. Talaga, W.L. Lau, H.S.M. Lu, W.F. Degrado, and R.M. Hochstrasser Chem. Phys. 247 1999 69
52. A.A. Deniz, T.A. Laurence, G.S. Beligere, M. Dahan, A.B. Martin, D.S. Chemla, P.E. Dawson, P.G. Schultz, and S. Weiss Proc. Natl. Acad. Sci. USA 97 2000 5179
53. H.P. Lu, L.Y. Xun, and X.S. Xie Science 282 1988 1877
54. H. Yang, and X.S. Xie Chem. Phys. 284 2002 423
55. H. Yang, and X.S. Xie J. Chem. Phys. 117 2002 10965
56. E. Rhoades, M. Cohen, B. Schuler, and G. Haran J. Am. Chem. Soc. 126 2004 14686
57. E. Rhoades, E. Gussakovsky, and G. Haran Proc. Natl. Acad. Sci. 100 2002 3197